Wall clock time and date at job start Sat Apr 11 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47182 * 2 1 4 4 C 1.53002 * 109.47328 * 305.79747 * 3 2 1 5 5 C 1.52997 * 109.46903 * 294.29351 * 4 3 2 6 6 C 1.53005 * 109.46636 * 65.79846 * 3 2 1 7 7 N 1.46896 * 109.47206 * 63.39297 * 6 3 2 8 8 C 1.46908 * 110.99700 * 199.18842 * 7 6 3 9 9 C 1.50700 * 109.47194 * 63.23401 * 8 7 6 10 10 H 1.07995 * 119.99939 * 5.30821 * 9 8 7 11 11 C 1.37875 * 119.99514 * 185.30928 * 9 8 7 12 12 N 1.31514 * 120.00521 * 354.91892 * 11 9 8 13 13 Si 1.86808 * 119.99638 * 174.92007 * 11 9 8 14 14 H 1.48497 * 109.47035 * 64.99809 * 13 11 9 15 15 H 1.48503 * 109.46739 * 184.99851 * 13 11 9 16 16 H 1.48496 * 109.47068 * 304.99705 * 13 11 9 17 17 C 1.46897 * 111.00232 * 75.23482 * 7 6 3 18 18 C 1.50702 * 109.46929 * 189.99990 * 17 7 6 19 19 C 1.39360 * 119.56439 * 89.99963 * 18 17 7 20 20 C 1.36076 * 121.06275 * 180.02562 * 19 18 17 21 21 C 1.40596 * 119.74936 * 0.24874 * 20 19 18 22 22 N 1.33681 * 121.06688 * 180.36605 * 21 20 19 23 23 C 1.31088 * 121.32193 * 179.72327 * 22 21 20 24 24 C 1.39332 * 121.74162 * 359.63796 * 23 22 21 25 25 C 1.36575 * 119.94109 * 0.02562 * 24 23 22 26 26 C 1.40770 * 118.14746 * 0.02562 * 25 24 23 27 27 C 1.36140 * 119.56349 * 269.97582 * 18 17 7 28 28 H 1.08993 * 109.46982 * 305.43528 * 1 2 3 29 29 H 1.08998 * 109.46871 * 65.43562 * 1 2 3 30 30 H 1.08997 * 109.46854 * 185.43554 * 1 2 3 31 31 H 1.09003 * 109.47156 * 240.00363 * 2 1 3 32 32 H 1.08999 * 109.47602 * 120.00489 * 2 1 3 33 33 H 1.09001 * 109.47263 * 185.79350 * 3 2 1 34 34 H 1.09000 * 109.46794 * 54.29358 * 4 3 2 35 35 H 1.08996 * 109.47173 * 174.28871 * 4 3 2 36 36 H 1.09002 * 109.46766 * 305.31342 * 5 4 3 37 37 H 1.08993 * 109.47363 * 65.32047 * 5 4 3 38 38 H 1.09005 * 109.46700 * 185.32138 * 5 4 3 39 39 H 1.09002 * 109.46928 * 303.38375 * 6 3 2 40 40 H 1.08997 * 109.46668 * 183.39372 * 6 3 2 41 41 H 1.08998 * 109.46981 * 183.23784 * 8 7 6 42 42 H 1.09007 * 109.46730 * 303.23094 * 8 7 6 43 43 H 0.96996 * 120.00563 * 180.02562 * 12 11 9 44 44 H 1.08994 * 109.47395 * 69.99556 * 17 7 6 45 45 H 1.09001 * 109.46931 * 309.99648 * 17 7 6 46 46 H 1.08001 * 119.46916 * 359.97438 * 19 18 17 47 47 H 1.08003 * 120.12146 * 179.97438 * 20 19 18 48 48 H 1.07992 * 119.12815 * 179.66114 * 23 22 21 49 49 H 1.08004 * 120.02713 * 180.02562 * 24 23 22 50 50 H 1.08001 * 120.92603 * 179.97438 * 25 24 23 51 51 H 1.07993 * 120.19208 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4146 2.2047 -1.1700 5 6 1.9159 1.6143 -2.4894 6 6 1.6525 2.1204 1.3158 7 7 2.3184 1.4377 2.4331 8 6 1.6492 1.7361 3.7064 9 6 0.2405 1.2018 3.6708 10 1 -0.0942 0.6176 2.8264 11 6 -0.6208 1.4588 4.7163 12 7 -0.1855 2.0835 5.7886 13 14 -2.4061 0.9194 4.6097 14 1 -2.4736 -0.5635 4.5692 15 1 -3.1450 1.4163 5.7982 16 1 -3.0188 1.4768 3.3773 17 6 3.7431 1.7907 2.4918 18 6 4.4420 0.8956 3.4825 19 6 4.9945 -0.3087 3.0506 20 6 5.6317 -1.1402 3.9190 21 6 5.7332 -0.7869 5.2760 22 7 6.3597 -1.5806 6.1505 23 6 6.4620 -1.2535 7.4158 24 6 5.9318 -0.0638 7.9105 25 6 5.2848 0.7960 7.0694 26 6 5.1762 0.4407 5.7116 27 6 4.5257 1.2744 4.7874 28 1 -0.3633 0.5958 0.8373 29 1 -0.3633 0.4272 -0.9347 30 1 -0.3633 -1.0230 0.0973 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.1251 1.4443 -0.1037 34 1 0.3292 2.1171 -1.1218 35 1 1.6972 3.2557 -1.1115 36 1 3.0059 1.6156 -2.4971 37 1 1.5530 0.5915 -2.5910 38 1 1.5460 2.2153 -3.3202 39 1 0.5719 2.0653 1.4483 40 1 1.9627 3.1650 1.2914 41 1 2.1959 1.2651 4.5233 42 1 1.6249 2.8150 3.8599 43 1 -0.7913 2.2640 6.5243 44 1 3.8474 2.8297 2.8042 45 1 4.1905 1.6610 1.5063 46 1 4.9149 -0.5868 2.0100 47 1 6.0540 -2.0702 3.5678 48 1 6.9709 -1.9238 8.0925 49 1 6.0323 0.1783 8.9583 50 1 4.8675 1.7222 7.4359 51 1 4.0936 2.2100 5.1102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353424248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:20 Heat of formation + Delta-G solvation = 36.950868 kcal Electronic energy + Delta-G solvation = -28278.667784 eV Core-core repulsion = 24755.987469 eV Total energy + Delta-G solvation = -3522.680316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.55325 -38.38546 -37.02293 -35.03562 -33.21827 -32.56989 -30.94136 -30.54003 -29.90168 -28.18661 -27.06494 -24.97125 -23.78443 -23.44885 -22.91115 -22.38803 -21.67751 -20.12937 -18.42191 -17.76062 -16.71756 -16.51078 -16.31128 -15.36368 -14.88579 -14.78154 -14.39428 -14.31083 -14.14659 -13.91868 -13.77290 -13.64241 -12.87588 -12.83466 -12.76731 -12.56184 -12.45668 -12.12701 -11.92284 -11.64427 -11.51969 -11.41189 -11.22753 -11.09890 -10.89850 -10.85568 -10.76951 -10.69383 -10.34595 -10.27405 -10.01253 -9.98620 -9.85726 -9.51626 -9.31114 -9.17462 -8.43257 -8.39413 -7.87451 -7.22315 -6.04233 -4.03183 0.68140 1.09059 2.30516 3.18734 3.31483 3.35994 3.38598 4.34465 4.43092 4.50911 4.83824 4.91230 4.96567 5.09885 5.13682 5.20680 5.30070 5.32298 5.33903 5.41806 5.50790 5.58739 5.59801 5.70577 5.74101 5.78464 5.85633 5.99424 6.06033 6.07467 6.10657 6.17071 6.20247 6.22566 6.26016 6.28783 6.31891 6.39148 6.49026 6.57225 6.60072 6.68800 6.73870 6.80662 6.94527 6.99506 7.06595 7.15622 7.32417 7.34994 7.83540 8.08955 8.11410 8.19442 8.54516 9.04619 9.60158 11.06865 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.004509 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.360596 B = 6208.572527 C = 8415.362920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.081 4.081 4 C -0.124 4.124 5 C -0.148 4.148 6 C 0.064 3.936 7 N -0.525 5.525 8 C 0.188 3.812 9 C -0.506 4.506 10 H 0.067 0.933 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.088 3.912 18 C -0.057 4.057 19 C -0.071 4.071 20 C -0.107 4.107 21 C 0.123 3.877 22 N -0.479 5.479 23 C 0.121 3.879 24 C -0.187 4.187 25 C -0.049 4.049 26 C -0.097 4.097 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.016 0.984 41 H 0.037 0.963 42 H -0.012 1.012 43 H 0.260 0.740 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.153 0.847 49 H 0.132 0.868 50 H 0.137 0.863 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 -1.222 -5.628 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C -0.100 4.100 4 C -0.162 4.162 5 C -0.205 4.205 6 C -0.064 4.064 7 N -0.249 5.249 8 C 0.063 3.937 9 C -0.544 4.544 10 H 0.085 0.915 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.040 4.040 18 C -0.058 4.058 19 C -0.091 4.091 20 C -0.126 4.126 21 C 0.002 3.998 22 N -0.187 5.187 23 C -0.052 4.052 24 C -0.207 4.207 25 C -0.075 4.075 26 C -0.099 4.099 27 C -0.098 4.098 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.006 0.994 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.170 0.830 49 H 0.150 0.850 50 H 0.155 0.845 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.933 -2.427 -5.950 12.682 hybrid contribution -1.454 1.418 0.741 2.162 sum 9.479 -1.009 -5.209 10.863 Atomic orbital electron populations 1.21907 0.96591 1.01185 1.01596 1.21353 0.95702 0.95934 1.01286 1.21197 0.99039 0.95775 0.93991 1.21621 1.01193 0.98996 0.94365 1.21765 1.00733 1.00936 0.97105 1.22128 1.01310 0.93402 0.89595 1.62095 0.98969 1.57616 1.06259 1.19836 0.94076 0.94330 0.85453 1.21159 0.95729 1.32761 1.04759 0.91510 1.24942 0.98630 0.95518 0.95277 1.69941 1.35398 1.42288 1.06061 0.86679 0.85068 0.79069 0.77374 1.20288 1.21439 1.20152 1.21087 0.91336 0.94876 0.96723 1.19581 0.96328 0.95415 0.94466 1.20759 0.95289 0.93111 0.99965 1.20662 1.00932 1.00247 0.90762 1.18833 0.96108 0.90746 0.94072 1.67979 1.15442 1.32061 1.03214 1.22821 0.95754 0.94612 0.91989 1.21782 1.01486 0.96370 1.01064 1.21526 0.94536 0.99276 0.92169 1.18813 1.00387 0.96022 0.94632 1.20944 0.96854 0.99654 0.92391 0.91040 0.93790 0.93848 0.93866 0.90317 0.92294 0.91476 0.92766 0.93185 0.92646 0.93531 0.88894 0.96581 0.94510 0.99394 0.93009 0.95036 0.90973 0.85469 0.85212 0.82969 0.84975 0.84495 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.10 37.16 0.34 -2.08 16 2 C -0.11 -1.58 5.28 -26.73 -0.14 -1.72 16 3 C -0.08 -1.18 2.20 -90.62 -0.20 -1.38 16 4 C -0.12 -1.58 5.07 -26.73 -0.14 -1.72 16 5 C -0.15 -1.62 9.55 37.16 0.35 -1.26 16 6 C 0.06 1.14 4.08 -3.82 -0.02 1.13 16 7 N -0.53 -10.31 3.73 -237.51 -0.89 -11.20 16 8 C 0.19 4.59 4.43 -4.97 -0.02 4.57 16 9 C -0.51 -13.49 8.08 -34.44 -0.28 -13.77 16 10 H 0.07 1.75 5.93 -52.49 -0.31 1.44 16 11 C 0.06 1.59 5.45 -17.82 -0.10 1.49 16 12 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 13 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 C 0.09 1.47 4.93 -4.98 -0.02 1.45 16 18 C -0.06 -0.97 4.89 -104.96 -0.51 -1.48 16 19 C -0.07 -1.09 9.58 -39.94 -0.38 -1.48 16 20 C -0.11 -1.68 9.98 -39.47 -0.39 -2.08 16 21 C 0.12 2.11 6.60 -84.86 -0.56 1.55 16 22 N -0.48 -7.74 10.34 -10.98 -0.11 -7.86 16 23 C 0.12 1.60 11.15 -17.46 -0.19 1.41 16 24 C -0.19 -2.36 10.03 -39.78 -0.40 -2.76 16 25 C -0.05 -0.72 9.90 -39.23 -0.39 -1.11 16 26 C -0.10 -1.64 5.74 -106.80 -0.61 -2.26 16 27 C -0.08 -1.38 7.53 -39.51 -0.30 -1.68 16 28 H 0.07 1.30 4.88 -51.93 -0.25 1.05 16 29 H 0.04 0.60 6.54 -51.93 -0.34 0.26 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.57 7.00 -51.93 -0.36 0.21 16 32 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 33 H 0.06 0.83 6.67 -51.93 -0.35 0.48 16 34 H 0.07 0.89 6.13 -51.93 -0.32 0.57 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.60 6.99 -51.93 -0.36 0.24 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 1.89 4.73 -51.93 -0.25 1.64 16 40 H 0.02 0.29 8.01 -51.93 -0.42 -0.13 16 41 H 0.04 0.97 5.65 -51.93 -0.29 0.67 16 42 H -0.01 -0.31 8.14 -51.93 -0.42 -0.74 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 45 H 0.07 1.06 6.49 -51.93 -0.34 0.72 16 46 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 48 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 49 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 50 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 51 H 0.13 2.29 7.89 -52.49 -0.41 1.87 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -29.83 393.61 -11.49 -41.32 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -8.17 Total: 3.90 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -3.96 Total: -23.19 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.26 Total: -44.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.83 -11.49 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353424248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.266 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds