Wall clock time and date at job start Sat Apr 11 2020 01:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 N 1.46503 * 109.46768 * 179.97438 * 3 2 1 5 5 C 1.37099 * 119.99863 * 263.29688 * 4 3 2 6 6 H 1.07999 * 119.99817 * 187.83861 * 5 4 3 7 7 C 1.38954 * 119.99917 * 7.84723 * 5 4 3 8 8 N 1.31407 * 120.00098 * 28.90127 * 7 5 4 9 9 Si 1.86803 * 119.99730 * 208.89913 * 7 5 4 10 10 H 1.48493 * 109.47078 * 94.97975 * 9 7 5 11 11 H 1.48495 * 109.46985 * 214.98429 * 9 7 5 12 12 H 1.48497 * 109.47074 * 334.98011 * 9 7 5 13 13 C 1.34771 * 119.99950 * 83.30073 * 4 3 2 14 14 O 1.21295 * 120.00263 * 359.97438 * 13 4 3 15 15 C 1.50696 * 119.99977 * 179.97438 * 13 4 3 16 16 H 1.09002 * 109.47577 * 324.99818 * 15 13 4 17 17 C 1.53000 * 109.47277 * 85.00294 * 15 13 4 18 18 S 1.81399 * 109.47313 * 205.00158 * 15 13 4 19 19 C 1.76197 * 103.00420 * 171.15581 * 18 15 13 20 20 C 1.38952 * 120.08108 * 354.77161 * 19 18 15 21 21 C 1.38091 * 119.93352 * 179.97438 * 20 19 18 22 22 C 1.38310 * 120.09704 * 0.02562 * 21 20 19 23 23 C 1.38287 * 120.17080 * 359.97438 * 22 21 20 24 24 C 1.38185 * 120.06707 * 0.25484 * 23 22 21 25 25 Cl 1.73597 * 120.05448 * 179.74431 * 24 23 22 26 26 H 1.09002 * 109.47345 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47276 * 300.00263 * 1 2 3 28 28 H 1.09008 * 109.47025 * 60.00064 * 1 2 3 29 29 H 1.08999 * 109.46563 * 239.99608 * 2 1 3 30 30 H 1.09000 * 109.46758 * 119.99984 * 2 1 3 31 31 H 1.08995 * 109.47041 * 60.00349 * 3 2 1 32 32 H 1.08994 * 109.47022 * 300.00006 * 3 2 1 33 33 H 0.96998 * 120.00049 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47085 * 64.57868 * 17 15 13 35 35 H 1.09000 * 109.47613 * 184.58516 * 17 15 13 36 36 H 1.09004 * 109.46848 * 304.58272 * 17 15 13 37 37 H 1.07996 * 120.03344 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.94963 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.91306 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.96812 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.5811 1.1801 6 1 5.2624 1.7083 1.1700 7 6 3.5044 1.5580 2.3885 8 7 2.3867 0.8755 2.4969 9 14 4.1718 2.4970 3.8590 10 1 3.5292 3.8340 3.9257 11 1 3.8759 1.7429 5.1036 12 1 5.6409 2.6604 3.7168 13 6 4.1794 1.3061 -1.1583 14 8 3.5734 1.1829 -2.2017 15 6 5.6863 1.3065 -1.1577 16 1 6.0492 1.9906 -0.3906 17 6 6.1967 -0.1057 -0.8646 18 16 6.2915 1.8432 -2.7814 19 6 8.0228 2.0343 -2.5159 20 6 8.5530 1.8808 -1.2407 21 6 9.9105 2.0307 -1.0362 22 6 10.7426 2.3338 -2.0986 23 6 10.2194 2.4875 -3.3694 24 6 8.8614 2.3437 -3.5811 25 17 8.2041 2.5432 -5.1754 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.9084 0.8591 3.3405 34 1 5.9025 -0.7737 -1.6740 35 1 7.2836 -0.0898 -0.7835 36 1 5.7676 -0.4598 0.0728 37 1 7.9041 1.6445 -0.4104 38 1 10.3229 1.9110 -0.0453 39 1 11.8039 2.4500 -1.9353 40 1 10.8721 2.7246 -4.1965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346480820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:08 Heat of formation + Delta-G solvation = -11.003962 kcal Electronic energy + Delta-G solvation = -23381.018238 eV Core-core repulsion = 19927.193615 eV Total energy + Delta-G solvation = -3453.824623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -39.07680 -38.84063 -36.37179 -35.32119 -33.23032 -32.23644 -31.42726 -30.75573 -30.56851 -26.03533 -24.97503 -23.37505 -22.94344 -22.60901 -20.62513 -19.28051 -18.19001 -17.02293 -16.46874 -16.11453 -15.44971 -14.85567 -14.57943 -14.35339 -14.17686 -13.87528 -13.82371 -13.64680 -13.32355 -12.88356 -12.63016 -12.30561 -11.99995 -11.82602 -11.57529 -11.52447 -11.43448 -11.32050 -11.17643 -10.98747 -10.87906 -10.72346 -10.55980 -10.41613 -10.39680 -9.71632 -9.60682 -9.43821 -8.97961 -8.83826 -8.53858 -7.94240 -7.11083 -6.58457 -3.99754 1.08630 1.17600 1.69478 2.21265 2.77698 2.99591 3.13524 3.13640 3.54328 3.71363 3.95163 4.58466 4.72233 4.81690 4.88562 5.17675 5.27709 5.45185 5.48064 5.53537 5.74678 5.76206 6.01558 6.05189 6.09066 6.12576 6.16935 6.21305 6.35526 6.36693 6.55968 6.59098 6.70018 6.80353 6.88316 6.95529 7.19477 7.32750 7.55674 7.67788 8.24988 8.90114 9.34024 9.75961 10.40833 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.004037 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.871695 B = 6934.428583 C = 8370.902145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.141 3.859 4 N -0.425 5.425 5 C -0.350 4.350 6 H 0.100 0.900 7 C 0.047 3.953 8 N -0.838 5.838 9 Si 0.909 3.091 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.468 3.532 14 O -0.594 6.594 15 C -0.094 4.094 16 H 0.109 0.891 17 C -0.140 4.140 18 S -0.026 6.026 19 C -0.084 4.084 20 C -0.129 4.129 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.094 4.094 24 C -0.029 4.029 25 Cl -0.059 7.059 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.271 0.729 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.609 1.352 -3.738 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.018 3.982 4 N -0.142 5.142 5 C -0.477 4.477 6 H 0.118 0.882 7 C -0.160 4.160 8 N -0.474 5.474 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.254 3.746 14 O -0.481 6.481 15 C -0.226 4.226 16 H 0.127 0.873 17 C -0.199 4.199 18 S 0.223 5.777 19 C -0.199 4.199 20 C -0.154 4.154 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.114 4.114 24 C -0.063 4.063 25 Cl -0.030 7.030 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.223 1.414 -5.201 11.557 hybrid contribution 1.048 0.273 2.057 2.325 sum 11.272 1.687 -3.144 11.823 Atomic orbital electron populations 1.21591 0.97437 0.99966 1.00440 1.21757 0.93902 0.98221 1.02136 1.21286 0.79402 0.97093 1.00422 1.43730 1.05586 1.59726 1.05140 1.19602 0.93596 1.51560 0.82934 0.88234 1.25135 0.96295 0.95852 0.98762 1.70158 1.17449 1.33134 1.26698 0.86211 0.79562 0.80177 0.80567 1.20170 1.20903 1.19367 1.18899 0.86536 0.84451 0.84697 1.90581 1.69012 1.56883 1.31602 1.23603 0.99614 1.02072 0.97314 0.87304 1.21975 1.00331 0.93759 1.03847 1.86285 0.93955 1.81412 1.16072 1.22184 1.00118 1.02345 0.95217 1.21387 0.96365 1.02221 0.95395 1.21155 0.93094 0.97961 0.99278 1.21038 0.99973 1.01823 0.92071 1.20932 0.92477 0.99953 0.98064 1.20364 0.93023 1.07003 0.85879 1.98368 1.86100 1.95660 1.22908 0.94113 0.93016 0.94312 0.94457 0.88655 0.88969 0.94198 0.91830 0.91489 0.92239 0.89952 0.84398 0.85344 0.85310 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 37.16 0.37 -2.16 16 2 C -0.12 -2.69 5.75 -26.73 -0.15 -2.84 16 3 C 0.14 3.31 4.52 -4.04 -0.02 3.29 16 4 N -0.43 -10.20 2.64 -114.82 -0.30 -10.51 16 5 C -0.35 -8.17 8.78 -14.93 -0.13 -8.30 16 6 H 0.10 2.19 5.94 -52.49 -0.31 1.88 16 7 C 0.05 1.08 4.79 -17.47 -0.08 0.99 16 8 N -0.84 -19.67 8.88 55.50 0.49 -19.18 16 9 Si 0.91 18.02 29.64 -169.99 -5.04 12.98 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 13 C 0.47 11.05 6.70 -10.99 -0.07 10.98 16 14 O -0.59 -15.60 15.83 5.54 0.09 -15.52 16 15 C -0.09 -1.84 1.59 -27.89 -0.04 -1.88 16 16 H 0.11 2.05 5.16 -51.92 -0.27 1.78 16 17 C -0.14 -2.43 8.72 37.16 0.32 -2.11 16 18 S -0.03 -0.48 19.53 -107.50 -2.10 -2.58 16 19 C -0.08 -1.32 6.05 -39.01 -0.24 -1.55 16 20 C -0.13 -1.80 8.05 -39.37 -0.32 -2.12 16 21 C -0.09 -1.08 10.04 -39.61 -0.40 -1.47 16 22 C -0.13 -1.31 10.04 -39.54 -0.40 -1.71 16 23 C -0.09 -1.08 9.82 -39.58 -0.39 -1.47 16 24 C -0.03 -0.41 6.34 -39.30 -0.25 -0.66 16 25 Cl -0.06 -0.84 27.84 -51.86 -1.44 -2.29 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.10 2.27 6.36 -51.93 -0.33 1.94 16 31 H 0.09 2.22 5.90 -51.93 -0.31 1.91 16 32 H 0.04 0.95 7.63 -51.93 -0.40 0.55 16 33 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.88 5.82 -51.93 -0.30 0.58 16 36 H 0.08 1.50 7.76 -51.93 -0.40 1.10 16 37 H 0.14 1.93 4.78 -52.49 -0.25 1.68 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -26.79 349.32 -9.92 -36.71 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.09 Total: 6.14 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.80 Total: -11.02 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.19 Total: -29.69 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.04 Total: 12.98 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.10 Total: -2.58 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.44 Total: -2.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.79 -9.92 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346480820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.705 kcal (2) G-P(sol) polarization free energy of solvation -26.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds