Wall clock time and date at job start Sat Apr 11 2020 01:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 N 1.46503 * 109.46768 * 179.97438 * 3 2 1 5 5 C 1.37099 * 119.99863 * 263.29688 * 4 3 2 6 6 H 1.07999 * 119.99817 * 187.83861 * 5 4 3 7 7 C 1.38954 * 119.99917 * 7.84723 * 5 4 3 8 8 N 1.31407 * 120.00098 * 28.90127 * 7 5 4 9 9 Si 1.86803 * 119.99730 * 208.89913 * 7 5 4 10 10 H 1.48493 * 109.47078 * 94.97975 * 9 7 5 11 11 H 1.48495 * 109.46985 * 214.98429 * 9 7 5 12 12 H 1.48497 * 109.47074 * 334.98011 * 9 7 5 13 13 C 1.34771 * 119.99950 * 83.30073 * 4 3 2 14 14 O 1.21295 * 120.00263 * 359.97438 * 13 4 3 15 15 C 1.50696 * 119.99977 * 179.97438 * 13 4 3 16 16 H 1.09002 * 109.47577 * 324.99818 * 15 13 4 17 17 C 1.53000 * 109.47277 * 85.00294 * 15 13 4 18 18 S 1.81399 * 109.47313 * 205.00158 * 15 13 4 19 19 C 1.76197 * 103.00420 * 171.15581 * 18 15 13 20 20 C 1.38952 * 120.08108 * 354.77161 * 19 18 15 21 21 C 1.38091 * 119.93352 * 179.97438 * 20 19 18 22 22 C 1.38310 * 120.09704 * 0.02562 * 21 20 19 23 23 C 1.38287 * 120.17080 * 359.97438 * 22 21 20 24 24 C 1.38185 * 120.06707 * 0.25484 * 23 22 21 25 25 Cl 1.73597 * 120.05448 * 179.74431 * 24 23 22 26 26 H 1.09002 * 109.47345 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47276 * 300.00263 * 1 2 3 28 28 H 1.09008 * 109.47025 * 60.00064 * 1 2 3 29 29 H 1.08999 * 109.46563 * 239.99608 * 2 1 3 30 30 H 1.09000 * 109.46758 * 119.99984 * 2 1 3 31 31 H 1.08995 * 109.47041 * 60.00349 * 3 2 1 32 32 H 1.08994 * 109.47022 * 300.00006 * 3 2 1 33 33 H 0.96998 * 120.00049 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47085 * 64.57868 * 17 15 13 35 35 H 1.09000 * 109.47613 * 184.58516 * 17 15 13 36 36 H 1.09004 * 109.46848 * 304.58272 * 17 15 13 37 37 H 1.07996 * 120.03344 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.94963 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.91306 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.96812 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.5811 1.1801 6 1 5.2624 1.7083 1.1700 7 6 3.5044 1.5580 2.3885 8 7 2.3867 0.8755 2.4969 9 14 4.1718 2.4970 3.8590 10 1 3.5292 3.8340 3.9257 11 1 3.8759 1.7429 5.1036 12 1 5.6409 2.6604 3.7168 13 6 4.1794 1.3061 -1.1583 14 8 3.5734 1.1829 -2.2017 15 6 5.6863 1.3065 -1.1577 16 1 6.0492 1.9906 -0.3906 17 6 6.1967 -0.1057 -0.8646 18 16 6.2915 1.8432 -2.7814 19 6 8.0228 2.0343 -2.5159 20 6 8.5530 1.8808 -1.2407 21 6 9.9105 2.0307 -1.0362 22 6 10.7426 2.3338 -2.0986 23 6 10.2194 2.4875 -3.3694 24 6 8.8614 2.3437 -3.5811 25 17 8.2041 2.5432 -5.1754 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.9084 0.8591 3.3405 34 1 5.9025 -0.7737 -1.6740 35 1 7.2836 -0.0898 -0.7835 36 1 5.7676 -0.4598 0.0728 37 1 7.9041 1.6445 -0.4104 38 1 10.3229 1.9110 -0.0453 39 1 11.8039 2.4500 -1.9353 40 1 10.8721 2.7246 -4.1965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346480820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:06 Heat of formation + Delta-G solvation = -22.315630 kcal Electronic energy + Delta-G solvation = -23381.508749 eV Core-core repulsion = 19927.193615 eV Total energy + Delta-G solvation = -3454.315133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.67665 -40.04422 -37.43651 -37.16536 -34.83339 -33.93137 -33.09826 -31.84177 -31.57760 -27.76053 -26.73803 -24.91709 -23.92019 -23.66605 -22.37226 -21.05962 -19.52510 -18.62129 -18.03356 -17.30607 -16.65215 -16.31466 -16.13648 -15.92033 -15.70959 -15.44095 -15.00967 -14.92054 -14.65741 -14.37634 -14.18948 -13.82239 -13.40576 -13.28337 -13.13143 -12.98287 -12.65710 -12.58231 -12.54246 -12.47849 -12.31775 -12.26439 -12.12363 -12.03310 -11.84297 -11.37732 -10.90912 -10.81697 -10.73690 -10.39463 -9.81298 -9.79238 -8.45643 -8.35608 -5.83546 0.09382 0.21606 0.34762 1.10609 1.38808 1.48869 1.52006 1.59693 1.94609 2.28116 2.60259 2.86445 3.04016 3.74695 3.94006 3.96109 4.07227 4.12335 4.34050 4.36956 4.38062 4.46308 4.47572 4.65128 4.66280 4.72135 4.84072 4.85246 5.03476 5.09101 5.11264 5.17440 5.25191 5.26434 5.40654 5.44157 5.51635 5.73378 5.82029 5.82842 6.42731 7.08517 7.50740 7.93710 8.64373 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.004037 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.871695 B = 6934.428583 C = 8370.902145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C 0.142 3.858 4 N -0.433 5.433 5 C -0.370 4.370 6 H 0.110 0.890 7 C 0.013 3.987 8 N -0.857 5.857 9 Si 0.974 3.026 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.258 1.258 13 C 0.452 3.548 14 O -0.631 6.631 15 C -0.078 4.078 16 H 0.113 0.887 17 C -0.128 4.128 18 S -0.079 6.079 19 C -0.100 4.100 20 C -0.141 4.141 21 C -0.091 4.091 22 C -0.109 4.109 23 C -0.093 4.093 24 C -0.043 4.043 25 Cl -0.069 7.069 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.016 0.984 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.275 0.725 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.572 1.803 -2.337 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C 0.019 3.981 4 N -0.149 5.149 5 C -0.497 4.497 6 H 0.128 0.872 7 C -0.192 4.192 8 N -0.493 5.493 9 Si 0.798 3.202 10 H -0.207 1.207 11 H -0.208 1.208 12 H -0.182 1.182 13 C 0.240 3.760 14 O -0.520 6.520 15 C -0.209 4.209 16 H 0.131 0.869 17 C -0.187 4.187 18 S 0.167 5.833 19 C -0.214 4.214 20 C -0.165 4.165 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.076 4.076 25 Cl -0.041 7.041 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.177 0.823 39 H 0.188 0.812 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.215 1.861 -3.784 13.871 hybrid contribution 0.239 0.146 1.623 1.647 sum 13.453 2.007 -2.161 13.773 Atomic orbital electron populations 1.21516 0.94581 1.01483 1.00987 1.21599 0.96388 0.96757 1.00080 1.21249 0.79852 0.97727 0.99253 1.43966 1.05822 1.59374 1.05751 1.19932 0.94304 1.52525 0.82931 0.87199 1.25887 0.96641 0.95853 1.00861 1.70225 1.18271 1.33302 1.27490 0.85204 0.79460 0.78241 0.77254 1.20664 1.20812 1.18197 1.19576 0.88441 0.83977 0.84040 1.90536 1.70289 1.58453 1.32737 1.23337 0.96520 1.03207 0.97853 0.86936 1.21893 1.01954 0.92236 1.02611 1.86335 0.98019 1.82857 1.16043 1.22036 0.97515 1.05173 0.96713 1.21484 0.97796 1.02792 0.94412 1.21549 0.91806 0.96507 1.01208 1.21557 1.01854 0.98745 0.90852 1.21328 0.91335 0.98849 0.99740 1.20635 0.94098 1.07694 0.85207 1.98363 1.86457 1.95756 1.23479 0.92124 0.92602 0.93559 0.96554 0.90330 0.89590 0.95519 0.91522 0.92601 0.89359 0.91060 0.84961 0.82264 0.81188 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.91 71.98 0.71 -4.01 16 2 C -0.11 -5.00 5.75 30.59 0.18 -4.82 16 3 C 0.14 6.93 4.52 86.38 0.39 7.32 16 4 N -0.43 -21.50 2.64 -635.55 -1.68 -23.17 16 5 C -0.37 -17.45 8.78 84.04 0.74 -16.71 16 6 H 0.11 4.82 5.94 -2.91 -0.02 4.81 16 7 C 0.01 0.61 4.79 84.93 0.41 1.02 16 8 N -0.86 -40.33 8.88 21.66 0.19 -40.14 16 9 Si 0.97 36.24 29.64 68.60 2.03 38.28 16 10 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 12 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 13 C 0.45 22.26 6.70 87.66 0.59 22.85 16 14 O -0.63 -34.92 15.83 -3.07 -0.05 -34.97 16 15 C -0.08 -3.12 1.59 29.85 0.05 -3.07 16 16 H 0.11 4.31 5.16 -2.39 -0.01 4.30 16 17 C -0.13 -4.51 8.72 71.98 0.63 -3.88 16 18 S -0.08 -3.05 19.53 -56.49 -1.10 -4.15 16 19 C -0.10 -3.08 6.05 22.64 0.14 -2.94 16 20 C -0.14 -3.65 8.05 22.41 0.18 -3.47 16 21 C -0.09 -1.69 10.04 22.25 0.22 -1.47 16 22 C -0.11 -1.71 10.04 22.30 0.22 -1.49 16 23 C -0.09 -1.81 9.82 22.27 0.22 -1.59 16 24 C -0.04 -1.17 6.34 22.45 0.14 -1.02 16 25 Cl -0.07 -1.96 27.84 -2.72 -0.08 -2.04 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.08 3.84 6.36 -2.39 -0.02 3.83 16 31 H 0.09 4.25 5.90 -2.39 -0.01 4.24 16 32 H 0.03 1.33 7.63 -2.39 -0.02 1.32 16 33 H 0.27 12.18 8.31 -92.71 -0.77 11.41 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 2.55 5.82 -2.39 -0.01 2.53 16 36 H 0.07 2.64 7.76 -2.38 -0.02 2.63 16 37 H 0.13 3.52 4.78 -2.91 -0.01 3.50 16 38 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -60.29 349.32 5.19 -55.10 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.06 Total: 24.37 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.81 Total: -13.28 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -1.49 Total: -63.32 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.05 Total: -34.97 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.28 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.10 Total: -4.15 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -60.29 5.19 -55.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346480820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.784 kcal (2) G-P(sol) polarization free energy of solvation -60.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds