Wall clock time and date at job start Sat Apr 11 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47233 * 2 1 4 4 N 1.46496 * 109.47488 * 185.09622 * 3 2 1 5 5 C 1.37102 * 119.99739 * 87.85223 * 4 3 2 6 6 H 1.08005 * 119.99915 * 166.78401 * 5 4 3 7 7 C 1.38952 * 120.00164 * 346.77883 * 5 4 3 8 8 N 1.31411 * 119.99595 * 2.03774 * 7 5 4 9 9 Si 1.86799 * 120.00066 * 182.02966 * 7 5 4 10 10 H 1.48496 * 109.46802 * 90.00205 * 9 7 5 11 11 H 1.48500 * 109.46894 * 210.00509 * 9 7 5 12 12 H 1.48501 * 109.47298 * 330.00700 * 9 7 5 13 13 C 1.34774 * 120.00153 * 267.85386 * 4 3 2 14 14 O 1.21291 * 119.99981 * 175.20356 * 13 4 3 15 15 C 1.50697 * 119.99907 * 355.47626 * 13 4 3 16 16 H 1.08998 * 109.47267 * 41.89974 * 15 13 4 17 17 C 1.52998 * 109.47189 * 281.89306 * 15 13 4 18 18 S 1.81407 * 109.47172 * 161.89449 * 15 13 4 19 19 C 1.76189 * 103.00128 * 190.21352 * 18 15 13 20 20 C 1.38943 * 120.08578 * 5.60977 * 19 18 15 21 21 C 1.38101 * 119.93633 * 179.77285 * 20 19 18 22 22 C 1.38305 * 120.09347 * 0.52588 * 21 20 19 23 23 C 1.38288 * 120.17387 * 359.70510 * 22 21 20 24 24 C 1.38187 * 120.06194 * 0.04089 * 23 22 21 25 25 Cl 1.73603 * 120.04896 * 180.02562 * 24 23 22 26 26 H 1.08999 * 109.47705 * 59.99866 * 1 2 3 27 27 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47132 * 299.99704 * 1 2 3 29 29 H 1.09005 * 109.47132 * 240.00296 * 2 1 3 30 30 H 1.08998 * 109.47183 * 120.00077 * 2 1 3 31 31 H 1.09008 * 109.47232 * 65.09816 * 3 2 1 32 32 H 1.09000 * 109.46991 * 305.10132 * 3 2 1 33 33 H 0.97008 * 119.99834 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47062 * 304.99806 * 17 15 13 35 35 H 1.08999 * 109.46747 * 64.99827 * 17 15 13 36 36 H 1.09003 * 109.47098 * 184.99884 * 17 15 13 37 37 H 1.08004 * 120.03471 * 0.02562 * 20 19 18 38 38 H 1.07997 * 119.95130 * 180.23240 * 21 20 19 39 39 H 1.08000 * 119.91448 * 179.72295 * 22 21 20 40 40 H 1.08001 * 119.97101 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4998 1.4444 -0.1227 5 6 4.0834 1.4359 -1.3633 6 1 5.1369 1.6510 -1.4659 7 6 3.3197 1.1505 -2.4884 8 7 2.0302 0.9281 -2.3681 9 14 4.1261 1.0831 -4.1721 10 1 4.5918 -0.3007 -4.4428 11 1 3.1420 1.4861 -5.2086 12 1 5.2855 2.0105 -4.2031 13 6 4.2691 1.4544 0.9839 14 8 5.4749 1.3681 0.8851 15 6 3.6307 1.5666 2.3444 16 1 2.7424 0.9359 2.3820 17 6 3.2347 3.0215 2.6035 18 16 4.8101 1.0259 3.6122 19 6 3.8166 0.9341 5.0644 20 6 2.4445 1.1372 4.9836 21 6 1.6681 1.0599 6.1230 22 6 2.2559 0.7914 7.3458 23 6 3.6218 0.5933 7.4319 24 6 4.4045 0.6639 6.2953 25 17 6.1191 0.4145 6.4036 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7531 1.9293 0.9322 32 1 1.6040 1.9820 -0.8408 33 1 1.4969 0.7292 -3.1537 34 1 4.1068 3.6632 2.4784 35 1 2.4604 3.3187 1.8962 36 1 2.8546 3.1190 3.6205 37 1 1.9849 1.3513 4.0299 38 1 0.6010 1.2140 6.0599 39 1 1.6465 0.7360 8.2358 40 1 4.0773 0.3834 8.3884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346480830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:12 Heat of formation + Delta-G solvation = -2.910260 kcal Electronic energy + Delta-G solvation = -23550.248332 eV Core-core repulsion = 20096.774678 eV Total energy + Delta-G solvation = -3453.473653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.14169 -38.88515 -36.41597 -35.49194 -33.26934 -32.05983 -31.37796 -30.83710 -30.65095 -25.99962 -24.96984 -23.55239 -23.00776 -22.68388 -20.67882 -19.40661 -17.95683 -17.03739 -16.54867 -16.22898 -15.59461 -14.89998 -14.75052 -14.24405 -14.17668 -13.81978 -13.76353 -13.72529 -13.55502 -12.93252 -12.77476 -12.22209 -12.06673 -11.84613 -11.62589 -11.61060 -11.44902 -11.34890 -11.19244 -11.07725 -10.85293 -10.71362 -10.43838 -10.34329 -10.19990 -9.85149 -9.76928 -9.60909 -8.89920 -8.88905 -8.54820 -7.79833 -7.18165 -6.27768 -3.92905 1.02462 1.11155 1.60866 2.15823 2.69412 3.11557 3.21629 3.26421 3.48123 3.72346 4.04174 4.65211 4.67490 4.82127 4.99685 5.11654 5.19272 5.27806 5.35294 5.39610 5.48646 5.67946 5.84154 5.88641 5.96088 5.98818 6.01692 6.06822 6.21472 6.29096 6.33212 6.40507 6.63079 6.63583 6.83823 6.94064 7.32640 7.50858 7.66946 7.98410 8.42874 9.07305 9.31991 9.83064 10.59956 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.003709 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.437167 B = 7547.049463 C = 8577.779951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.119 3.881 4 N -0.433 5.433 5 C -0.294 4.294 6 H 0.103 0.897 7 C 0.026 3.974 8 N -0.876 5.876 9 Si 0.932 3.068 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.461 3.539 14 O -0.576 6.576 15 C -0.108 4.108 16 H 0.104 0.896 17 C -0.144 4.144 18 S -0.006 6.006 19 C -0.089 4.089 20 C -0.130 4.130 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.028 4.028 25 Cl -0.058 7.058 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.096 0.904 30 H 0.019 0.981 31 H 0.028 0.972 32 H 0.122 0.878 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 0.656 15.049 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C -0.005 4.005 4 N -0.151 5.151 5 C -0.421 4.421 6 H 0.120 0.880 7 C -0.175 4.175 8 N -0.518 5.518 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.246 3.754 14 O -0.460 6.460 15 C -0.241 4.241 16 H 0.122 0.878 17 C -0.203 4.203 18 S 0.242 5.758 19 C -0.204 4.204 20 C -0.154 4.154 21 C -0.114 4.114 22 C -0.148 4.148 23 C -0.113 4.113 24 C -0.062 4.062 25 Cl -0.029 7.029 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.139 0.861 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.446 0.347 14.501 14.908 hybrid contribution -1.224 0.051 -0.592 1.360 sum -4.670 0.398 13.909 14.677 Atomic orbital electron populations 1.21558 0.97133 0.99808 1.00637 1.21863 0.94258 0.98092 1.01121 1.21903 0.80734 0.97531 1.00286 1.43676 1.05412 1.61575 1.04413 1.19799 0.96288 1.44494 0.81558 0.87965 1.25283 0.95688 0.96514 1.00024 1.70104 1.04851 1.47207 1.29636 0.85825 0.78715 0.78786 0.80807 1.20371 1.20908 1.19529 1.18900 0.87293 0.85469 0.83700 1.90562 1.13979 1.55725 1.85764 1.23705 1.01531 1.01368 0.97461 0.87849 1.22091 1.02957 0.93378 1.01852 1.86431 1.12023 1.81744 0.95590 1.22253 0.97569 1.02533 0.98019 1.21309 0.91676 1.02496 0.99931 1.21148 0.99980 0.98083 0.92236 1.21045 0.94021 1.01717 0.98051 1.20950 0.93694 0.99775 0.96901 1.20369 0.85480 1.06906 0.93442 1.98375 1.11427 1.94964 1.98107 0.92146 0.94406 0.94811 0.88554 0.96207 0.95436 0.86088 0.92347 0.90945 0.90744 0.91933 0.84743 0.85330 0.85249 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.12 -2.32 5.39 -26.73 -0.14 -2.46 16 3 C 0.12 2.50 4.24 -4.04 -0.02 2.48 16 4 N -0.43 -10.56 2.63 -114.81 -0.30 -10.86 16 5 C -0.29 -7.79 9.47 -14.93 -0.14 -7.93 16 6 H 0.10 2.89 7.28 -52.48 -0.38 2.50 16 7 C 0.03 0.64 5.33 -17.47 -0.09 0.55 16 8 N -0.88 -20.86 7.40 55.50 0.41 -20.45 16 9 Si 0.93 20.03 29.55 -169.99 -5.02 15.01 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.46 11.01 6.82 -10.99 -0.07 10.93 16 14 O -0.58 -15.85 15.65 5.55 0.09 -15.76 16 15 C -0.11 -2.02 1.54 -27.89 -0.04 -2.06 16 16 H 0.10 1.81 5.20 -51.92 -0.27 1.54 16 17 C -0.14 -2.28 8.46 37.16 0.31 -1.96 16 18 S -0.01 -0.12 19.44 -107.50 -2.09 -2.20 16 19 C -0.09 -1.34 5.99 -39.02 -0.23 -1.58 16 20 C -0.13 -1.69 8.04 -39.37 -0.32 -2.01 16 21 C -0.09 -0.99 10.04 -39.61 -0.40 -1.39 16 22 C -0.13 -1.22 10.04 -39.54 -0.40 -1.62 16 23 C -0.09 -1.02 9.82 -39.58 -0.39 -1.41 16 24 C -0.03 -0.39 6.34 -39.30 -0.25 -0.63 16 25 Cl -0.06 -0.80 27.84 -51.86 -1.44 -2.25 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 2.26 6.23 -51.93 -0.32 1.93 16 30 H 0.02 0.39 7.61 -51.93 -0.39 -0.01 16 31 H 0.03 0.50 4.69 -51.92 -0.24 0.26 16 32 H 0.12 2.77 5.86 -51.93 -0.30 2.47 16 33 H 0.27 6.07 8.31 -40.82 -0.34 5.74 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.13 6.48 -51.93 -0.34 0.80 16 36 H 0.06 0.84 6.11 -51.93 -0.32 0.52 16 37 H 0.13 1.72 4.97 -52.48 -0.26 1.46 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 344.73 15.07 5.20 5.20 Total: -1.00 -28.44 344.73 -9.91 -38.35 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.93 Total: 3.92 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.81 Total: -10.94 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.11 Total: -31.31 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.09 Total: -2.20 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.44 Total: -2.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.44 -9.91 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346480830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.440 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds