Wall clock time and date at job start Sat Apr 11 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47470 * 2 1 4 4 N 1.46493 * 109.47719 * 179.97438 * 3 2 1 5 5 C 1.37100 * 120.00572 * 264.77292 * 4 3 2 6 6 H 1.07996 * 120.00195 * 138.85160 * 5 4 3 7 7 C 1.38956 * 119.99620 * 318.85602 * 5 4 3 8 8 N 1.31406 * 119.99622 * 341.82638 * 7 5 4 9 9 Si 1.86795 * 119.99871 * 161.82953 * 7 5 4 10 10 H 1.48492 * 109.47332 * 59.99803 * 9 7 5 11 11 H 1.48503 * 109.47143 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46906 * 299.99675 * 9 7 5 13 13 C 1.34776 * 119.99790 * 84.76974 * 4 3 2 14 14 O 1.21290 * 120.00183 * 180.02562 * 13 4 3 15 15 C 1.50704 * 120.00256 * 359.97438 * 13 4 3 16 16 S 1.81401 * 109.47238 * 179.97438 * 15 13 4 17 17 C 1.81400 * 102.99657 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47211 * 180.02562 * 17 16 15 19 19 C 1.38261 * 119.99487 * 270.27749 * 18 17 16 20 20 C 1.38224 * 120.02625 * 180.27284 * 19 18 17 21 21 C 1.38240 * 120.01050 * 359.44471 * 20 19 18 22 22 C 1.38327 * 119.98621 * 0.27768 * 21 20 19 23 23 Cl 1.73608 * 120.01075 * 179.97438 * 22 21 20 24 24 C 1.38199 * 119.99253 * 89.99410 * 18 17 16 25 25 H 1.08992 * 109.46830 * 60.00000 * 1 2 3 26 26 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46891 * 299.99511 * 1 2 3 28 28 H 1.09000 * 109.47304 * 240.00193 * 2 1 3 29 29 H 1.08999 * 109.47464 * 120.00144 * 2 1 3 30 30 H 1.09000 * 109.46699 * 59.99823 * 3 2 1 31 31 H 1.08999 * 109.46895 * 300.00492 * 3 2 1 32 32 H 0.97002 * 119.99468 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46250 * 60.00050 * 15 13 4 34 34 H 1.09001 * 109.47218 * 300.00843 * 15 13 4 35 35 H 1.08998 * 109.47691 * 59.99771 * 17 16 15 36 36 H 1.09005 * 109.47402 * 300.00118 * 17 16 15 37 37 H 1.08000 * 119.98665 * 0.02562 * 19 18 17 38 38 H 1.07994 * 119.99546 * 179.72358 * 20 19 18 39 39 H 1.08000 * 120.00125 * 180.25305 * 21 20 19 40 40 H 1.07994 * 120.00817 * 0.03098 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5509 1.1832 6 1 5.0700 0.9486 1.3547 7 6 3.7523 2.4356 2.1612 8 7 2.9270 3.4082 1.8453 9 14 4.3370 2.2425 3.9247 10 1 5.8165 2.3596 3.9714 11 1 3.7300 3.3046 4.7666 12 1 3.9295 0.9099 4.4381 13 6 4.1793 1.3360 -1.1614 14 8 5.3922 1.3356 -1.1610 15 6 3.4264 1.2162 -2.4614 16 16 4.6057 1.0913 -3.8340 17 6 3.5280 0.9580 -5.2870 18 6 4.3724 0.8441 -6.5301 19 6 4.7643 1.9846 -7.2063 20 6 5.5341 1.8807 -8.3496 21 6 5.9221 0.6367 -8.8112 22 6 5.5350 -0.5044 -8.1318 23 17 6.0213 -2.0670 -8.7113 24 6 4.7596 -0.4000 -6.9906 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 2.6217 4.0260 2.5279 33 1 2.7994 2.0970 -2.6005 34 1 2.8000 0.3245 -2.4376 35 1 2.8984 1.8451 -5.3551 36 1 2.8991 0.0726 -5.1931 37 1 4.4656 2.9569 -6.8432 38 1 5.8362 2.7716 -8.8799 39 1 6.5269 0.5559 -9.7023 40 1 4.4568 -1.2906 -6.4600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348753851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:14 Heat of formation + Delta-G solvation = -39.239324 kcal Electronic energy + Delta-G solvation = -22188.397102 eV Core-core repulsion = 18733.348102 eV Total energy + Delta-G solvation = -3455.049000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.46135 -40.30590 -37.47461 -37.14437 -34.64064 -33.81852 -33.04104 -31.71448 -30.95981 -28.16711 -27.43534 -26.11094 -23.66743 -22.70650 -22.49020 -21.04015 -18.84485 -18.13681 -17.86493 -17.16881 -16.86794 -16.67137 -16.42582 -16.12514 -15.98131 -15.41642 -15.03907 -14.77731 -14.59149 -14.41860 -14.24011 -13.94208 -13.74812 -13.50505 -13.38906 -13.07540 -12.95870 -12.65680 -12.52715 -12.37332 -12.35382 -12.26444 -12.12667 -11.99953 -11.81390 -11.53952 -10.99000 -10.85713 -10.49264 -9.86419 -9.63195 -9.43374 -8.64637 -8.36720 -6.13706 -0.10928 0.22188 0.83729 1.13870 1.38343 1.40224 1.50261 1.67087 1.97280 2.28264 2.71830 2.97499 3.02137 3.55050 3.80774 3.90102 4.04127 4.07041 4.11727 4.19259 4.27795 4.32906 4.39644 4.44152 4.57047 4.59920 4.74251 4.74795 4.92867 4.96166 5.13695 5.21628 5.28845 5.34730 5.38347 5.44812 5.47930 5.56551 5.80948 6.20293 6.49879 7.14204 7.39249 8.00401 8.66718 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002466 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.509871 B =11351.191549 C =11685.680481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.448 5.448 5 C -0.343 4.343 6 H 0.060 0.940 7 C 0.008 3.992 8 N -0.888 5.888 9 Si 0.980 3.020 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.263 1.263 13 C 0.460 3.540 14 O -0.613 6.613 15 C -0.097 4.097 16 S -0.238 6.238 17 C -0.053 4.053 18 C -0.067 4.067 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.048 4.048 23 Cl -0.073 7.073 24 C -0.105 4.105 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.274 0.726 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -4.758 -19.303 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.167 5.167 5 C -0.472 4.472 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.525 5.525 9 Si 0.803 3.197 10 H -0.205 1.205 11 H -0.194 1.194 12 H -0.187 1.187 13 C 0.248 3.752 14 O -0.499 6.499 15 C -0.248 4.248 16 S -0.009 6.009 17 C -0.200 4.200 18 C -0.068 4.068 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.074 4.074 23 Cl -0.045 7.045 24 C -0.125 4.125 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.179 0.821 39 H 0.170 0.830 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.044 -4.720 -19.121 20.105 hybrid contribution -0.766 -0.121 1.124 1.365 sum -4.810 -4.841 -17.997 19.247 Atomic orbital electron populations 1.21634 0.93109 1.02466 1.02306 1.21898 0.97530 0.96434 1.01297 1.21680 0.79833 0.96696 1.03223 1.43631 1.06020 1.63000 1.04022 1.19294 1.12625 1.22615 0.92625 0.92209 1.26135 0.96851 0.92691 1.03876 1.69971 1.33644 1.13461 1.35415 0.85210 0.78344 0.78673 0.77435 1.20466 1.19434 1.18717 1.20441 0.87748 0.81445 0.85554 1.90525 1.15988 1.56172 1.87178 1.23439 1.00450 1.07268 0.93603 1.87947 1.15674 1.97316 0.99944 1.22440 0.98728 1.07392 0.91415 1.19220 0.99318 0.93384 0.94925 1.21472 0.97073 0.98678 0.95150 1.21445 0.96869 0.97977 0.95996 1.21388 1.00041 0.90837 1.00705 1.21023 1.01816 0.87146 0.97452 1.98368 1.90619 1.27198 1.88279 1.21048 0.97835 0.98350 0.95293 0.91340 0.91185 0.93125 0.92193 0.93628 0.90014 0.91568 0.91610 0.86797 0.86186 0.87132 0.87572 0.83861 0.82055 0.83006 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.91 71.98 0.71 -2.68 16 2 C -0.13 -4.41 6.17 30.59 0.19 -4.22 16 3 C 0.11 4.49 4.69 86.38 0.41 4.90 16 4 N -0.45 -22.81 2.50 -635.55 -1.59 -24.40 16 5 C -0.34 -19.56 8.84 84.04 0.74 -18.82 16 6 H 0.06 3.66 7.82 -2.91 -0.02 3.64 16 7 C 0.01 0.41 4.95 84.93 0.42 0.83 16 8 N -0.89 -47.56 11.61 21.66 0.25 -47.30 16 9 Si 0.98 42.42 29.59 68.60 2.03 44.45 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 C 0.46 23.04 7.61 87.66 0.67 23.71 16 14 O -0.61 -36.48 15.78 -3.06 -0.05 -36.53 16 15 C -0.10 -3.48 5.03 71.24 0.36 -3.12 16 16 S -0.24 -8.21 20.86 -56.49 -1.18 -9.39 16 17 C -0.05 -1.15 6.07 71.24 0.43 -0.72 16 18 C -0.07 -1.43 5.14 -19.87 -0.10 -1.53 16 19 C -0.10 -1.93 9.70 22.27 0.22 -1.71 16 20 C -0.10 -1.62 10.05 22.27 0.22 -1.40 16 21 C -0.11 -1.84 9.83 22.29 0.22 -1.62 16 22 C -0.05 -0.96 6.32 22.32 0.14 -0.82 16 23 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 24 C -0.10 -2.26 9.49 22.29 0.21 -2.05 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.84 6.59 -2.39 -0.02 1.83 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 3.79 5.76 -2.39 -0.01 3.78 16 31 H 0.07 2.41 6.66 -2.39 -0.02 2.39 16 32 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.11 3.65 7.41 -2.39 -0.02 3.63 16 34 H 0.12 3.62 6.54 -2.39 -0.02 3.61 16 35 H 0.11 2.00 8.09 -2.39 -0.02 1.98 16 36 H 0.11 1.97 8.08 -2.39 -0.02 1.95 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -71.37 364.47 5.26 -66.11 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.04 Total: 17.82 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.84 Total: -9.26 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.34 Total: -71.70 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.05 Total: -36.53 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.18 Total: -9.39 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -71.37 5.26 -66.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348753851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.871 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds