Wall clock time and date at job start Sat Apr 11 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.55046 * 2 1 4 4 C 1.53008 * 117.50160 * 145.66816 * 2 1 3 5 5 H 1.08999 * 117.50029 * 215.00309 * 4 2 1 6 6 C 1.50699 * 117.49649 * 359.97438 * 4 2 1 7 7 O 1.21297 * 120.00199 * 0.02562 * 6 4 2 8 8 N 1.34774 * 120.00307 * 179.97438 * 6 4 2 9 9 C 1.40138 * 120.00673 * 184.47948 * 8 6 4 10 10 C 1.38653 * 120.09599 * 325.33132 * 9 8 6 11 11 C 1.38253 * 120.00522 * 180.02562 * 10 9 8 12 12 C 1.38296 * 120.21340 * 359.97438 * 11 10 9 13 13 C 1.38200 * 120.19715 * 0.02562 * 12 11 10 14 14 C 1.38787 * 119.99199 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.10820 * 180.02562 * 14 13 12 16 16 C 1.81401 * 102.99656 * 0.02562 * 15 14 13 17 17 C 1.50705 * 109.46983 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00177 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00420 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46768 * 89.99638 * 21 19 17 23 23 H 1.48495 * 109.47390 * 210.00113 * 21 19 17 24 24 H 1.48500 * 109.46905 * 330.00285 * 21 19 17 25 25 C 1.52998 * 60.00049 * 107.49183 * 4 2 1 26 26 F 1.39899 * 117.50119 * 107.49212 * 25 4 2 27 27 F 1.39902 * 117.49839 * 252.51228 * 25 4 2 28 28 H 1.09003 * 109.46567 * 274.32786 * 1 2 3 29 29 H 1.08992 * 109.47021 * 34.33286 * 1 2 3 30 30 H 1.09002 * 109.46984 * 154.33545 * 1 2 3 31 31 H 0.97003 * 119.99257 * 4.48692 * 8 6 4 32 32 H 1.08000 * 119.99558 * 0.03898 * 10 9 8 33 33 H 1.08004 * 119.89323 * 180.02562 * 11 10 9 34 34 H 1.07999 * 119.90087 * 180.28143 * 12 11 10 35 35 H 1.07997 * 120.00514 * 180.02562 * 13 12 11 36 36 H 1.09000 * 109.47646 * 299.99956 * 16 15 14 37 37 H 1.09002 * 109.47449 * 60.00424 * 16 15 14 38 38 H 0.96998 * 120.00194 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 0.7654 5 1 3.1714 -0.8746 1.2689 6 6 1.3721 -2.1398 1.4621 7 8 0.1638 -2.0525 1.4025 8 7 1.9416 -3.1488 2.1506 9 6 1.1411 -4.1486 2.7194 10 6 -0.1107 -3.8331 3.2253 11 6 -0.8986 -4.8209 3.7864 12 6 -0.4428 -6.1252 3.8450 13 6 0.8035 -6.4493 3.3434 14 6 1.6014 -5.4643 2.7782 15 16 3.1906 -5.8741 2.1371 16 6 3.3080 -7.6576 2.4470 17 6 4.6348 -8.1681 1.9468 18 1 5.3369 -7.4878 1.4880 19 6 4.9519 -9.5039 2.0740 20 7 4.0962 -10.3327 2.6314 21 14 6.5961 -10.1368 1.4533 22 1 7.6028 -10.0497 2.5416 23 1 6.4521 -11.5511 1.0242 24 1 7.0407 -9.3127 0.3007 25 6 2.2365 -1.1213 -0.7646 26 9 3.4367 -0.8060 -1.4107 27 9 1.4341 -2.0681 -1.4102 28 1 -0.3632 0.0776 1.0248 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3633 -0.9263 -0.4451 31 1 2.9057 -3.1828 2.2526 32 1 -0.4703 -2.8157 3.1807 33 1 -1.8736 -4.5732 4.1796 34 1 -1.0644 -6.8937 4.2803 35 1 1.1562 -7.4689 3.3903 36 1 3.2266 -7.8466 3.5174 37 1 2.5006 -8.1711 1.9250 38 1 4.3194 -11.2723 2.7212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359365064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:34 Heat of formation + Delta-G solvation = -79.633187 kcal Electronic energy + Delta-G solvation = -24821.601838 eV Core-core repulsion = 20813.004549 eV Total energy + Delta-G solvation = -4008.597289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.94292 -47.60708 -40.65578 -38.56752 -36.42607 -34.76533 -33.29874 -30.82427 -29.96008 -28.65369 -28.58902 -24.84291 -23.42650 -22.76283 -21.99948 -21.40069 -20.17698 -18.33254 -18.01870 -17.29146 -16.78923 -16.55407 -16.30504 -16.04971 -15.25412 -14.95793 -14.59755 -14.48443 -14.26151 -14.09719 -13.88120 -13.76396 -13.38481 -13.20522 -13.02743 -12.94928 -12.67740 -12.42566 -12.32964 -12.24366 -11.76303 -11.27329 -11.07692 -10.97880 -10.80160 -10.43497 -10.24711 -10.04252 -9.74139 -9.71531 -9.27844 -9.19637 -8.68082 -8.14491 -6.66769 -6.31357 -4.37438 1.36409 1.61971 2.02325 2.31066 2.60858 2.84408 3.12181 3.19444 3.25787 3.30028 3.54077 3.72280 4.00796 4.08834 4.25752 4.27376 4.51051 4.81154 5.06359 5.10155 5.20958 5.24934 5.28240 5.50479 5.57705 5.67164 5.72143 5.75651 6.10422 6.19259 6.40623 6.46643 6.63792 6.79026 6.89282 6.92718 7.19613 7.31385 7.61177 7.83788 7.94952 8.63489 9.26974 10.79777 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003596 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.772978 B = 7785.367296 C = 9628.392217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 H 0.139 0.861 4 C -0.196 4.196 5 H 0.152 0.848 6 C 0.546 3.454 7 O -0.507 6.507 8 N -0.652 5.652 9 C 0.142 3.858 10 C -0.105 4.105 11 C -0.126 4.126 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.088 4.088 15 S -0.165 6.165 16 C 0.076 3.924 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.225 3.775 26 F -0.153 7.153 27 F -0.146 7.146 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.414 0.586 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 19.295 -0.683 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.127 4.127 3 H 0.157 0.843 4 C -0.218 4.218 5 H 0.169 0.831 6 C 0.332 3.668 7 O -0.382 6.382 8 N -0.297 5.297 9 C 0.042 3.958 10 C -0.126 4.126 11 C -0.148 4.148 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.204 4.204 15 S 0.081 5.919 16 C -0.070 4.070 17 C -0.560 4.560 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.188 3.812 26 F -0.134 7.134 27 F -0.126 7.126 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.251 0.749 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.579 19.804 -1.327 20.911 hybrid contribution 0.702 -1.561 0.224 1.726 sum -5.877 18.244 -1.103 19.199 Atomic orbital electron populations 1.21451 0.89268 1.03136 1.03935 1.23757 0.98946 0.94540 0.95492 0.84300 1.23781 1.03893 1.00669 0.93495 0.83069 1.19197 0.87983 0.81171 0.78438 1.90714 1.13790 1.73475 1.60223 1.43344 1.10998 1.23308 1.52025 1.17128 0.92935 0.86008 0.99751 1.21069 0.93185 1.00615 0.97764 1.20939 0.99753 0.92905 1.01191 1.21063 0.95686 0.96507 0.99879 1.21253 0.94543 0.99205 0.99276 1.21923 1.00797 0.94031 1.03630 1.85128 1.13020 1.19249 1.74466 1.21381 1.01792 0.83261 1.00604 1.20601 1.00265 0.93886 1.41216 0.91352 1.24949 0.97806 0.96134 0.94701 1.69940 1.35440 1.04486 1.42730 0.86319 0.82720 0.78151 0.79314 1.20237 1.20840 1.19473 1.19771 0.81109 0.94406 0.85930 1.93065 1.44822 1.92476 1.82990 1.93083 1.71670 1.64963 1.82895 0.89869 0.92051 0.90360 0.74852 0.84464 0.86053 0.86006 0.84633 0.93696 0.93673 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.40 37.16 0.31 -0.79 16 2 C -0.11 -0.90 6.39 -90.61 -0.58 -1.48 16 3 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.20 -1.92 6.17 -91.77 -0.57 -2.49 16 5 H 0.15 1.03 8.14 -51.93 -0.42 0.60 16 6 C 0.55 7.19 7.08 -10.99 -0.08 7.11 16 7 O -0.51 -7.55 10.53 5.54 0.06 -7.49 16 8 N -0.65 -9.27 5.02 -9.71 -0.05 -9.32 16 9 C 0.14 2.36 6.32 -83.43 -0.53 1.83 16 10 C -0.10 -1.61 8.70 -39.42 -0.34 -1.95 16 11 C -0.13 -1.78 10.04 -39.55 -0.40 -2.18 16 12 C -0.11 -1.68 10.04 -39.57 -0.40 -2.08 16 13 C -0.12 -2.13 9.36 -39.39 -0.37 -2.50 16 14 C -0.09 -1.65 6.12 -38.90 -0.24 -1.89 16 15 S -0.17 -3.43 20.72 -107.50 -2.23 -5.66 16 16 C 0.08 1.89 4.09 36.01 0.15 2.04 16 17 C -0.52 -14.04 9.13 -34.44 -0.31 -14.36 16 18 H 0.07 1.83 7.71 -52.49 -0.40 1.42 16 19 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 20 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 21 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.23 2.54 5.14 -26.73 -0.14 2.40 16 26 F -0.15 -1.76 17.60 2.25 0.04 -1.72 16 27 F -0.15 -2.09 16.03 2.25 0.04 -2.05 16 28 H 0.08 0.79 7.26 -51.93 -0.38 0.42 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.92 6.22 -51.93 -0.32 0.59 16 31 H 0.41 5.33 7.97 -40.82 -0.33 5.00 16 32 H 0.14 2.00 6.20 -52.49 -0.33 1.67 16 33 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.14 2.61 5.88 -52.49 -0.31 2.30 16 36 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 37 H 0.05 1.18 7.75 -51.92 -0.40 0.78 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -30.02 342.06 -8.97 -38.99 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.12 Total: 5.20 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.58 Total: -14.58 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.69 Total: -33.54 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.06 Total: -7.49 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.23 Total: -5.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.02 -8.97 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359365064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.639 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds