Wall clock time and date at job start Sat Apr 11 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.55046 * 2 1 4 4 C 1.53008 * 117.50160 * 145.66816 * 2 1 3 5 5 H 1.08999 * 117.50029 * 215.00309 * 4 2 1 6 6 C 1.50699 * 117.49649 * 359.97438 * 4 2 1 7 7 O 1.21297 * 120.00199 * 0.02562 * 6 4 2 8 8 N 1.34774 * 120.00307 * 179.97438 * 6 4 2 9 9 C 1.40138 * 120.00673 * 184.47948 * 8 6 4 10 10 C 1.38653 * 120.09599 * 325.33132 * 9 8 6 11 11 C 1.38253 * 120.00522 * 180.02562 * 10 9 8 12 12 C 1.38296 * 120.21340 * 359.97438 * 11 10 9 13 13 C 1.38200 * 120.19715 * 0.02562 * 12 11 10 14 14 C 1.38787 * 119.99199 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.10820 * 180.02562 * 14 13 12 16 16 C 1.81401 * 102.99656 * 0.02562 * 15 14 13 17 17 C 1.50705 * 109.46983 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00177 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00420 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46768 * 89.99638 * 21 19 17 23 23 H 1.48495 * 109.47390 * 210.00113 * 21 19 17 24 24 H 1.48500 * 109.46905 * 330.00285 * 21 19 17 25 25 C 1.52998 * 60.00049 * 107.49183 * 4 2 1 26 26 F 1.39899 * 117.50119 * 107.49212 * 25 4 2 27 27 F 1.39902 * 117.49839 * 252.51228 * 25 4 2 28 28 H 1.09003 * 109.46567 * 274.32786 * 1 2 3 29 29 H 1.08992 * 109.47021 * 34.33286 * 1 2 3 30 30 H 1.09002 * 109.46984 * 154.33545 * 1 2 3 31 31 H 0.97003 * 119.99257 * 4.48692 * 8 6 4 32 32 H 1.08000 * 119.99558 * 0.03898 * 10 9 8 33 33 H 1.08004 * 119.89323 * 180.02562 * 11 10 9 34 34 H 1.07999 * 119.90087 * 180.28143 * 12 11 10 35 35 H 1.07997 * 120.00514 * 180.02562 * 13 12 11 36 36 H 1.09000 * 109.47646 * 299.99956 * 16 15 14 37 37 H 1.09002 * 109.47449 * 60.00424 * 16 15 14 38 38 H 0.96998 * 120.00194 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 0.7654 5 1 3.1714 -0.8746 1.2689 6 6 1.3721 -2.1398 1.4621 7 8 0.1638 -2.0525 1.4025 8 7 1.9416 -3.1488 2.1506 9 6 1.1411 -4.1486 2.7194 10 6 -0.1107 -3.8331 3.2253 11 6 -0.8986 -4.8209 3.7864 12 6 -0.4428 -6.1252 3.8450 13 6 0.8035 -6.4493 3.3434 14 6 1.6014 -5.4643 2.7782 15 16 3.1906 -5.8741 2.1371 16 6 3.3080 -7.6576 2.4470 17 6 4.6348 -8.1681 1.9468 18 1 5.3369 -7.4878 1.4880 19 6 4.9519 -9.5039 2.0740 20 7 4.0962 -10.3327 2.6314 21 14 6.5961 -10.1368 1.4533 22 1 7.6028 -10.0497 2.5416 23 1 6.4521 -11.5511 1.0242 24 1 7.0407 -9.3127 0.3007 25 6 2.2365 -1.1213 -0.7646 26 9 3.4367 -0.8060 -1.4107 27 9 1.4341 -2.0681 -1.4102 28 1 -0.3632 0.0776 1.0248 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3633 -0.9263 -0.4451 31 1 2.9057 -3.1828 2.2526 32 1 -0.4703 -2.8157 3.1807 33 1 -1.8736 -4.5732 4.1796 34 1 -1.0644 -6.8937 4.2803 35 1 1.1562 -7.4689 3.3903 36 1 3.2266 -7.8466 3.5174 37 1 2.5006 -8.1711 1.9250 38 1 4.3194 -11.2723 2.7212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359365064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:33 Heat of formation + Delta-G solvation = -95.458507 kcal Electronic energy + Delta-G solvation = -24822.288076 eV Core-core repulsion = 20813.004549 eV Total energy + Delta-G solvation = -4009.283527 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.84089 -48.52533 -41.75399 -39.74054 -37.32284 -35.92959 -35.34839 -32.18314 -31.10557 -30.62634 -29.45865 -25.92003 -25.30400 -24.06012 -23.12511 -22.33397 -21.21136 -19.38382 -19.20620 -18.51585 -18.16121 -17.95114 -17.47187 -17.03345 -16.84629 -16.31744 -15.91477 -15.65000 -15.18372 -15.11321 -14.97188 -14.78099 -14.76837 -14.72476 -14.55346 -14.26945 -14.00847 -13.75431 -13.40659 -13.20824 -13.05972 -12.78264 -12.68823 -12.53550 -11.92985 -11.84757 -11.66707 -11.45802 -11.06134 -11.00529 -10.89156 -10.74526 -10.52199 -9.41186 -8.38297 -8.25663 -6.52917 0.13037 0.30533 0.73619 1.01191 1.39268 1.40140 1.52147 1.70176 1.78238 1.92258 2.22676 2.33416 2.74384 2.97117 2.97960 3.19776 3.44103 3.68076 3.87196 4.13051 4.20063 4.34619 4.39813 4.46590 4.47405 4.50569 4.82020 4.82701 4.87473 4.91563 4.98570 5.14723 5.23888 5.37501 5.47143 5.50250 5.53331 5.78846 5.96646 6.21175 6.54089 6.87259 7.16178 8.73793 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003596 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.772978 B = 7785.367296 C = 9628.392217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 H 0.182 0.818 4 C -0.193 4.193 5 H 0.186 0.814 6 C 0.542 3.458 7 O -0.525 6.525 8 N -0.655 5.655 9 C 0.142 3.858 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.111 4.111 13 C -0.136 4.136 14 C -0.117 4.117 15 S -0.156 6.156 16 C 0.082 3.918 17 C -0.542 4.542 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.922 5.922 21 Si 0.977 3.023 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.265 1.265 25 C 0.197 3.803 26 F -0.156 7.156 27 F -0.172 7.172 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.419 0.581 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.111 0.889 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 21.689 -0.459 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.199 0.801 4 C -0.215 4.215 5 H 0.203 0.797 6 C 0.330 3.670 7 O -0.401 6.401 8 N -0.300 5.300 9 C 0.042 3.958 10 C -0.131 4.131 11 C -0.129 4.129 12 C -0.131 4.131 13 C -0.161 4.161 14 C -0.232 4.232 15 S 0.089 5.911 16 C -0.065 4.065 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.183 4.183 20 N -0.560 5.560 21 Si 0.800 3.200 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.189 1.189 25 C 0.160 3.840 26 F -0.137 7.137 27 F -0.152 7.152 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.257 0.743 32 H 0.167 0.833 33 H 0.179 0.821 34 H 0.167 0.833 35 H 0.129 0.871 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.753 22.225 -1.099 23.255 hybrid contribution 0.570 -2.212 0.191 2.292 sum -6.184 20.013 -0.908 20.967 Atomic orbital electron populations 1.21442 0.89888 1.02642 1.03908 1.23998 0.98408 0.95316 0.91976 0.80108 1.23914 1.05031 1.00233 0.92284 0.79705 1.19778 0.88231 0.81134 0.77867 1.90701 1.14807 1.73911 1.60636 1.43453 1.11152 1.23156 1.52263 1.17300 0.93657 0.85613 0.99238 1.21340 0.92667 1.01580 0.97507 1.21403 1.00794 0.91812 0.98926 1.21349 0.94583 0.97969 0.99214 1.21235 0.96133 0.98123 1.00566 1.21909 0.99964 0.95383 1.05969 1.84716 1.15515 1.15214 1.75649 1.20992 1.00235 0.86617 0.98684 1.20946 1.01092 0.94543 1.41549 0.91489 1.25898 1.01559 0.96282 0.94580 1.70052 1.37404 1.04903 1.43606 0.85262 0.78135 0.77598 0.78998 1.19179 1.20159 1.18885 1.20226 0.81529 0.95962 0.86326 1.93053 1.45026 1.92472 1.83132 1.93024 1.72448 1.66261 1.83503 0.90060 0.89548 0.93394 0.74307 0.83277 0.82108 0.83304 0.87061 0.95813 0.96318 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.40 71.98 0.60 -1.36 16 2 C -0.08 -1.07 6.39 -10.79 -0.07 -1.14 16 3 H 0.18 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.19 -3.34 6.17 -11.54 -0.07 -3.41 16 5 H 0.19 1.87 8.14 -2.39 -0.02 1.85 16 6 C 0.54 13.56 7.08 87.66 0.62 14.18 16 7 O -0.52 -14.97 10.53 -3.08 -0.03 -15.01 16 8 N -0.66 -18.17 5.02 -303.01 -1.52 -19.69 16 9 C 0.14 4.67 6.32 38.22 0.24 4.91 16 10 C -0.11 -3.16 8.70 22.37 0.19 -2.96 16 11 C -0.11 -2.78 10.04 22.29 0.22 -2.55 16 12 C -0.11 -3.23 10.04 22.27 0.22 -3.01 16 13 C -0.14 -5.08 9.36 22.39 0.21 -4.87 16 14 C -0.12 -4.49 6.12 22.71 0.14 -4.36 16 15 S -0.16 -6.73 20.72 -56.49 -1.17 -7.90 16 16 C 0.08 4.32 4.09 71.24 0.29 4.61 16 17 C -0.54 -30.31 9.13 25.60 0.23 -30.08 16 18 H 0.07 3.67 7.71 -2.91 -0.02 3.65 16 19 C 0.02 1.02 5.46 84.65 0.46 1.48 16 20 N -0.92 -53.34 13.29 21.45 0.28 -53.05 16 21 Si 0.98 42.81 29.54 68.60 2.03 44.83 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 C 0.20 4.15 5.14 30.60 0.16 4.31 16 26 F -0.16 -3.36 17.60 44.97 0.79 -2.57 16 27 F -0.17 -4.96 16.03 44.97 0.72 -4.24 16 28 H 0.08 1.37 7.26 -2.39 -0.02 1.35 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.09 6.22 -2.39 -0.01 1.07 16 31 H 0.42 10.55 7.97 -92.71 -0.74 9.81 16 32 H 0.15 3.99 6.20 -2.91 -0.02 3.97 16 33 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.11 4.64 5.88 -2.91 -0.02 4.62 16 36 H 0.02 1.31 7.75 -2.39 -0.02 1.29 16 37 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 38 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -68.14 342.06 4.94 -63.20 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.38 Total: 18.67 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.46 Total: -24.24 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.24 Total: -72.74 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.03 Total: -15.01 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 1.51 Total: -6.81 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.17 Total: -7.90 kcal Total: -68.14 4.94 -63.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359365064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.256 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds