Wall clock time and date at job start Sat Apr 11 2020 01:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 115.56195 * 2 1 4 4 C 1.53001 * 117.50047 * 145.69742 * 2 1 3 5 5 H 1.09002 * 117.51540 * 0.02562 * 4 2 1 6 6 C 1.50701 * 117.49650 * 214.97655 * 4 2 1 7 7 O 1.21292 * 119.99989 * 359.97438 * 6 4 2 8 8 N 1.34775 * 119.99549 * 179.97438 * 6 4 2 9 9 C 1.40142 * 119.99635 * 185.52886 * 8 6 4 10 10 C 1.38651 * 120.10332 * 24.81485 * 9 8 6 11 11 C 1.38243 * 120.01316 * 180.02562 * 10 9 8 12 12 C 1.38306 * 120.21118 * 359.95488 * 11 10 9 13 13 C 1.38202 * 120.19332 * 359.78917 * 12 11 10 14 14 C 1.38779 * 119.99279 * 0.48784 * 13 12 11 15 15 S 1.76201 * 120.10854 * 179.76577 * 14 13 12 16 16 C 1.81403 * 102.99640 * 359.72625 * 15 14 13 17 17 C 1.50702 * 109.47110 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99844 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00160 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.47367 * 299.99656 * 21 19 17 24 24 H 1.48506 * 109.47080 * 59.99645 * 21 19 17 25 25 C 1.53002 * 60.00107 * 107.48758 * 4 2 1 26 26 F 1.39890 * 117.49975 * 107.49166 * 25 4 2 27 27 F 1.39903 * 117.49733 * 252.51130 * 25 4 2 28 28 H 1.09005 * 109.46859 * 274.30184 * 1 2 3 29 29 H 1.08996 * 109.47380 * 34.30547 * 1 2 3 30 30 H 1.09006 * 109.47277 * 154.30670 * 1 2 3 31 31 H 0.96998 * 120.00758 * 5.52884 * 8 6 4 32 32 H 1.08002 * 119.99206 * 0.02612 * 10 9 8 33 33 H 1.08002 * 119.90042 * 179.97438 * 11 10 9 34 34 H 1.07997 * 119.90657 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.00071 * 180.25278 * 13 12 11 36 36 H 1.08996 * 109.47595 * 59.99651 * 16 15 14 37 37 H 1.09001 * 109.47056 * 299.99683 * 16 15 14 38 38 H 0.97004 * 119.99639 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 0.7648 5 1 1.6115 -1.8591 1.2678 6 6 3.5293 -0.7812 1.4606 7 8 3.9721 0.3464 1.4007 8 7 4.1935 -1.7304 2.1494 9 6 5.3323 -1.3896 2.8917 10 6 5.4996 -0.0928 3.3527 11 6 6.6239 0.2414 4.0843 12 6 7.5845 -0.7147 4.3598 13 6 7.4240 -2.0112 3.9091 14 6 6.3013 -2.3544 3.1690 15 16 6.0966 -4.0051 2.5875 16 6 7.5871 -4.8402 3.1971 17 6 7.5613 -6.2863 2.7739 18 1 6.7311 -6.6652 2.1964 19 6 8.5971 -7.1259 3.1249 20 7 9.6079 -6.6647 3.8285 21 14 8.5647 -8.9186 2.6010 22 1 9.7850 -9.6023 3.0999 23 1 7.3608 -9.5782 3.1672 24 1 8.5230 -9.0005 1.1188 25 6 2.2364 -1.1209 -0.7652 26 9 3.4365 -0.8054 -1.4111 27 9 1.4339 -2.0674 -1.4112 28 1 -0.3633 0.0771 1.0248 29 1 -0.3634 0.8489 -0.5792 30 1 -0.3634 -0.9261 -0.4456 31 1 3.8834 -2.6493 2.1315 32 1 4.7513 0.6565 3.1402 33 1 6.7526 1.2523 4.4422 34 1 8.4608 -0.4483 4.9322 35 1 8.1741 -2.7564 4.1295 36 1 7.6182 -4.7800 4.2849 37 1 8.4707 -4.3560 2.7811 38 1 9.6248 -5.7336 4.1003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359365065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:36 Heat of formation + Delta-G solvation = -102.805198 kcal Electronic energy + Delta-G solvation = -24577.204499 eV Core-core repulsion = 20567.602395 eV Total energy + Delta-G solvation = -4009.602103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.90570 -48.58723 -41.86383 -39.76361 -37.52807 -36.11984 -35.72940 -32.24503 -31.18542 -30.22976 -29.58528 -25.89712 -25.30828 -24.19786 -23.24764 -22.21275 -21.43970 -19.85646 -19.32748 -18.64605 -18.24994 -18.06131 -17.53531 -17.18787 -16.64047 -16.17369 -15.94001 -15.65951 -15.59756 -15.26462 -15.18963 -15.01326 -14.88280 -14.78715 -14.52719 -14.08799 -13.95432 -13.82168 -13.75505 -13.53452 -13.01005 -12.76269 -12.61240 -12.24040 -11.94583 -11.84900 -11.75399 -11.28223 -11.27173 -11.01884 -10.99482 -10.86065 -10.61212 -9.45832 -8.87180 -8.35581 -6.62309 0.02012 0.20848 0.58812 0.94527 1.51674 1.54983 1.59054 1.64459 1.80134 1.84048 2.11658 2.48293 2.67791 2.95862 2.99512 3.05144 3.36006 3.59245 3.76060 4.04421 4.08102 4.26321 4.31423 4.36135 4.39000 4.46410 4.50301 4.54004 4.75202 4.83862 4.97156 5.01672 5.15886 5.27271 5.30906 5.43919 5.53281 5.88505 5.90969 6.09512 6.29312 6.71765 7.17035 8.54032 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.003378 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.208318 B = 8287.173877 C =10103.031217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 H 0.142 0.858 4 C -0.192 4.192 5 H 0.185 0.815 6 C 0.544 3.456 7 O -0.532 6.532 8 N -0.653 5.653 9 C 0.146 3.854 10 C -0.121 4.121 11 C -0.103 4.103 12 C -0.113 4.113 13 C -0.133 4.133 14 C -0.126 4.126 15 S -0.142 6.142 16 C 0.063 3.937 17 C -0.616 4.616 18 H 0.060 0.940 19 C -0.018 4.018 20 N -0.922 5.922 21 Si 1.123 2.877 22 H -0.279 1.279 23 H -0.265 1.265 24 H -0.269 1.269 25 C 0.202 3.798 26 F -0.172 7.172 27 F -0.152 7.152 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.420 0.580 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.111 0.889 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 15.181 -3.534 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.103 4.103 3 H 0.160 0.840 4 C -0.213 4.213 5 H 0.202 0.798 6 C 0.332 3.668 7 O -0.409 6.409 8 N -0.296 5.296 9 C 0.046 3.954 10 C -0.143 4.143 11 C -0.124 4.124 12 C -0.134 4.134 13 C -0.157 4.157 14 C -0.241 4.241 15 S 0.103 5.897 16 C -0.084 4.084 17 C -0.654 4.654 18 H 0.079 0.921 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.942 3.058 22 H -0.204 1.204 23 H -0.190 1.190 24 H -0.194 1.194 25 C 0.165 3.835 26 F -0.153 7.153 27 F -0.132 7.132 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.258 0.742 32 H 0.171 0.829 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.129 0.871 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.136 13.944 -4.236 23.266 hybrid contribution 0.829 1.107 0.540 1.485 sum -17.307 15.051 -3.697 23.232 Atomic orbital electron populations 1.21551 0.87191 1.04642 1.05089 1.23904 0.99315 0.94846 0.92191 0.84018 1.23961 0.97796 1.07164 0.92403 0.79821 1.19781 0.84813 0.84408 0.77803 1.90662 1.67753 1.21849 1.60605 1.43478 1.26096 1.13096 1.46972 1.17365 0.87412 0.93932 0.96717 1.21463 1.00417 0.94354 0.98043 1.21430 0.92781 1.00754 0.97393 1.21365 1.00581 0.91483 0.99922 1.21194 0.96416 0.98635 0.99491 1.21845 0.98381 0.97938 1.05981 1.84673 1.34381 1.00533 1.70160 1.21095 0.91558 0.98411 0.97384 1.21839 1.10272 0.93626 1.39677 0.92129 1.27506 0.91072 1.10134 0.93195 1.70928 1.31997 1.17372 1.35479 0.82871 0.77102 0.68876 0.76967 1.20371 1.18973 1.19364 1.20211 0.81482 0.95676 0.86121 1.93047 1.46037 1.92687 1.83496 1.93037 1.71560 1.65594 1.82994 0.88577 0.88988 0.90846 0.74192 0.82909 0.81915 0.83052 0.87102 0.96154 0.96627 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 10.16 71.98 0.73 -0.22 16 2 C -0.08 -1.18 5.90 -10.79 -0.06 -1.24 16 3 H 0.14 2.16 7.67 -2.39 -0.02 2.14 16 4 C -0.19 -3.35 5.90 -11.54 -0.07 -3.42 16 5 H 0.18 1.99 8.14 -2.39 -0.02 1.97 16 6 C 0.54 13.92 7.05 87.66 0.62 14.53 16 7 O -0.53 -15.98 13.43 -3.07 -0.04 -16.02 16 8 N -0.65 -18.49 5.17 -303.00 -1.57 -20.06 16 9 C 0.15 4.85 6.44 38.22 0.25 5.09 16 10 C -0.12 -3.55 8.72 22.37 0.20 -3.36 16 11 C -0.10 -2.62 10.04 22.29 0.22 -2.39 16 12 C -0.11 -3.23 10.04 22.28 0.22 -3.01 16 13 C -0.13 -4.86 9.36 22.39 0.21 -4.65 16 14 C -0.13 -4.81 6.12 22.71 0.14 -4.67 16 15 S -0.14 -6.11 20.55 -56.49 -1.16 -7.27 16 16 C 0.06 3.28 3.40 71.24 0.24 3.52 16 17 C -0.62 -34.58 9.13 25.60 0.23 -34.34 16 18 H 0.06 3.36 7.71 -2.91 -0.02 3.34 16 19 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 20 N -0.92 -54.99 13.65 21.45 0.29 -54.69 16 21 Si 1.12 48.51 29.90 68.60 2.05 50.56 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 C 0.20 4.16 5.14 30.60 0.16 4.32 16 26 F -0.17 -4.80 17.13 44.97 0.77 -4.03 16 27 F -0.15 -3.08 16.50 44.97 0.74 -2.34 16 28 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.58 7.10 -2.38 -0.02 0.56 16 31 H 0.42 11.02 7.65 -92.71 -0.71 10.31 16 32 H 0.15 4.25 5.79 -2.91 -0.02 4.23 16 33 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.11 4.44 5.88 -2.91 -0.02 4.42 16 36 H 0.02 1.09 7.60 -2.39 -0.02 1.07 16 37 H 0.02 0.85 7.63 -2.39 -0.02 0.83 16 38 H 0.26 15.47 7.22 -92.71 -0.67 14.80 16 Total: -1.00 -69.88 345.31 5.15 -64.73 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.51 Total: 19.52 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 3.55 Total: -30.41 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -1.27 Total: -74.75 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.04 Total: -16.02 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 1.51 Total: -6.37 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.05 Total: 50.56 kcal Atomic # 16 Polarization: -6.11 SS G_CDS: -1.16 Total: -7.27 kcal Total: -69.88 5.15 -64.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359365065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.072 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds