Wall clock time and date at job start Sat Apr 11 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.55864 * 2 1 4 4 C 1.53000 * 117.49903 * 214.31234 * 2 1 3 5 5 H 1.09002 * 117.50113 * 0.02562 * 4 2 1 6 6 C 1.50704 * 117.49860 * 145.02198 * 4 2 1 7 7 O 1.21298 * 119.99851 * 359.90849 * 6 4 2 8 8 N 1.34781 * 119.99685 * 179.91489 * 6 4 2 9 9 C 1.40141 * 119.99325 * 184.47429 * 8 6 4 10 10 C 1.38647 * 120.10182 * 325.32471 * 9 8 6 11 11 C 1.38256 * 120.00685 * 180.28297 * 10 9 8 12 12 C 1.38295 * 120.20939 * 359.48324 * 11 10 9 13 13 C 1.38196 * 120.20006 * 0.51987 * 12 11 10 14 14 C 1.38784 * 119.99170 * 359.73906 * 13 12 11 15 15 S 1.76201 * 120.11009 * 179.97438 * 14 13 12 16 16 C 1.81402 * 102.99697 * 0.02562 * 15 14 13 17 17 C 1.50697 * 109.47065 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00160 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00033 * 179.97438 * 17 16 15 20 20 N 1.31525 * 120.00046 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46878 * 90.00033 * 21 19 17 23 23 H 1.48499 * 109.47280 * 210.00067 * 21 19 17 24 24 H 1.48499 * 109.47029 * 330.00411 * 21 19 17 25 25 C 1.52999 * 60.03127 * 252.52070 * 4 2 1 26 26 F 1.39900 * 117.49948 * 107.47921 * 25 4 2 27 27 F 1.39906 * 117.49929 * 252.49796 * 25 4 2 28 28 H 1.09002 * 109.47329 * 205.68872 * 1 2 3 29 29 H 1.08998 * 109.47678 * 325.68971 * 1 2 3 30 30 H 1.09006 * 109.47432 * 85.68892 * 1 2 3 31 31 H 0.96990 * 120.00062 * 4.47010 * 8 6 4 32 32 H 1.07998 * 119.99427 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.89041 * 179.74723 * 11 10 9 34 34 H 1.08003 * 119.90052 * 180.25688 * 12 11 10 35 35 H 1.08005 * 120.00408 * 179.76375 * 13 12 11 36 36 H 1.09008 * 109.47147 * 300.00253 * 16 15 14 37 37 H 1.09004 * 109.47341 * 59.99946 * 16 15 14 38 38 H 0.96998 * 119.99650 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7650 5 1 1.6112 -1.8582 -1.2687 6 6 3.5293 -0.7811 -1.4608 7 8 3.9710 0.3471 -1.4025 8 7 4.1946 -1.7307 -2.1480 9 6 5.4424 -1.4399 -2.7158 10 6 5.6979 -0.1749 -3.2227 11 6 6.9276 0.1081 -3.7877 12 6 7.9096 -0.8642 -3.8401 13 6 7.6642 -2.1279 -3.3376 14 6 6.4310 -2.4227 -2.7734 15 16 6.1145 -4.0332 -2.1323 16 6 7.6730 -4.9087 -2.4410 17 6 7.5607 -6.3257 -1.9407 18 1 6.6434 -6.6658 -1.4833 19 6 8.6287 -7.1884 -2.0680 20 7 9.7453 -6.7748 -2.6265 21 14 8.4898 -8.9448 -1.4473 22 1 7.9765 -9.8152 -2.5355 23 1 9.8277 -9.4255 -1.0183 24 1 7.5545 -8.9900 -0.2947 25 6 2.2367 -1.1218 0.7650 26 9 1.4340 -2.0685 1.4105 27 9 3.4371 -0.8070 1.4110 28 1 -0.3634 -0.9261 0.4455 29 1 -0.3634 0.8488 0.5792 30 1 -0.3634 0.0773 -1.0248 31 1 3.8098 -2.6152 -2.2493 32 1 4.9349 0.5882 -3.1797 33 1 7.1232 1.0929 -4.1857 34 1 8.8699 -0.6364 -4.2790 35 1 8.4322 -2.8859 -3.3836 36 1 7.8794 -4.9168 -3.5113 37 1 8.4843 -4.4017 -1.9185 38 1 10.4967 -7.3816 -2.7156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359365066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:42 Heat of formation + Delta-G solvation = -84.038593 kcal Electronic energy + Delta-G solvation = -24606.200355 eV Core-core repulsion = 20597.412033 eV Total energy + Delta-G solvation = -4008.788322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.95439 -47.61177 -40.60010 -38.51067 -36.60045 -34.78251 -33.29803 -30.82828 -30.03544 -28.81448 -28.62903 -24.76079 -23.41558 -22.76201 -21.98589 -21.31783 -20.34720 -18.56950 -17.85304 -17.28303 -16.78896 -16.54727 -16.31746 -16.11442 -15.24373 -14.97883 -14.78711 -14.40186 -14.26296 -14.02258 -13.85443 -13.67198 -13.49003 -13.39037 -13.09336 -13.06640 -12.98001 -12.41720 -12.28587 -12.15835 -11.83446 -11.31651 -11.10025 -10.97843 -10.80400 -10.47685 -10.34071 -10.10026 -9.88048 -9.73811 -9.28638 -9.19808 -8.68069 -8.15153 -6.66885 -6.31358 -4.37424 1.35794 1.61850 2.01553 2.30571 2.58259 2.80734 3.11336 3.19445 3.25791 3.30028 3.53839 3.76556 3.98671 4.03336 4.25557 4.26110 4.50420 4.69860 5.02695 5.06353 5.17648 5.20716 5.24229 5.28393 5.47282 5.50972 5.70704 5.73352 5.75511 6.12556 6.40339 6.46163 6.62944 6.78874 6.89333 6.92756 7.19286 7.30225 7.61192 7.83818 7.92753 8.63491 9.26964 10.79768 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.003528 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.094111 B = 7935.091735 C = 9832.723672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 H 0.145 0.855 4 C -0.194 4.194 5 H 0.152 0.848 6 C 0.546 3.454 7 O -0.512 6.512 8 N -0.651 5.651 9 C 0.141 3.859 10 C -0.105 4.105 11 C -0.126 4.126 12 C -0.110 4.110 13 C -0.118 4.118 14 C -0.088 4.088 15 S -0.165 6.165 16 C 0.076 3.924 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.228 3.772 26 F -0.151 7.151 27 F -0.147 7.147 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.415 0.585 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.559 13.674 0.724 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.131 4.131 3 H 0.162 0.838 4 C -0.216 4.216 5 H 0.170 0.830 6 C 0.332 3.668 7 O -0.387 6.387 8 N -0.296 5.296 9 C 0.041 3.959 10 C -0.127 4.127 11 C -0.148 4.148 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.203 4.203 15 S 0.081 5.919 16 C -0.070 4.070 17 C -0.560 4.560 18 H 0.087 0.913 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.191 3.809 26 F -0.131 7.131 27 F -0.128 7.128 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.252 0.748 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.068 13.800 1.364 21.225 hybrid contribution 1.245 -1.182 -0.217 1.731 sum -14.823 12.618 1.146 19.500 Atomic orbital electron populations 1.21454 0.89903 1.03823 1.03589 1.23775 0.97582 0.96070 0.95668 0.83775 1.23815 0.99216 1.05088 0.93459 0.83012 1.19194 0.84191 0.85023 0.78402 1.90709 1.67201 1.20450 1.60373 1.43288 1.18449 1.15776 1.52046 1.17134 0.84630 0.94322 0.99828 1.21071 0.98446 0.95421 0.97719 1.20942 0.93404 0.99276 1.01147 1.21066 0.99210 0.92972 0.99844 1.21254 0.95807 0.97909 0.99292 1.21922 0.95691 0.99117 1.03612 1.85124 1.30556 1.01681 1.74496 1.21382 0.87828 0.97196 1.00613 1.20602 1.00488 0.93634 1.41260 0.91345 1.24951 0.94681 0.99272 0.94694 1.69943 1.03539 1.36424 1.42681 0.86317 0.77704 0.83161 0.79312 1.20237 1.20842 1.19470 1.19806 0.81487 0.93703 0.85940 1.93042 1.71779 1.65344 1.82952 1.93111 1.44307 1.92408 1.82930 0.91028 0.90510 0.90378 0.74762 0.84503 0.86016 0.85969 0.84598 0.93688 0.93668 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 10.16 37.16 0.38 -0.36 16 2 C -0.11 -0.96 5.91 -90.58 -0.54 -1.49 16 3 H 0.14 1.30 7.67 -51.93 -0.40 0.90 16 4 C -0.19 -1.94 5.89 -91.77 -0.54 -2.48 16 5 H 0.15 1.06 8.14 -51.93 -0.42 0.64 16 6 C 0.55 7.45 7.09 -10.98 -0.08 7.37 16 7 O -0.51 -8.21 13.68 5.54 0.08 -8.13 16 8 N -0.65 -9.44 5.02 -9.70 -0.05 -9.49 16 9 C 0.14 2.38 6.32 -83.43 -0.53 1.85 16 10 C -0.11 -1.65 8.70 -39.42 -0.34 -1.99 16 11 C -0.13 -1.81 10.04 -39.55 -0.40 -2.20 16 12 C -0.11 -1.69 10.04 -39.58 -0.40 -2.09 16 13 C -0.12 -2.14 9.36 -39.40 -0.37 -2.51 16 14 C -0.09 -1.66 6.12 -38.90 -0.24 -1.90 16 15 S -0.17 -3.44 20.72 -107.50 -2.23 -5.66 16 16 C 0.08 1.90 4.09 36.00 0.15 2.04 16 17 C -0.52 -14.06 9.13 -34.44 -0.31 -14.37 16 18 H 0.07 1.83 7.71 -52.49 -0.40 1.43 16 19 C 0.07 1.86 5.46 -17.81 -0.10 1.77 16 20 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 21 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 C 0.23 2.59 5.14 -26.69 -0.14 2.46 16 26 F -0.15 -1.71 16.50 2.25 0.04 -1.67 16 27 F -0.15 -2.15 17.13 2.25 0.04 -2.11 16 28 H 0.07 0.41 7.10 -51.93 -0.37 0.04 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.42 5.38 7.97 -40.82 -0.33 5.06 16 32 H 0.14 2.07 6.20 -52.49 -0.33 1.74 16 33 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.14 2.63 5.88 -52.48 -0.31 2.32 16 36 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 37 H 0.05 1.18 7.75 -51.92 -0.40 0.78 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -30.56 347.52 -8.81 -39.37 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.18 Total: 4.89 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.45 Total: -13.90 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.69 Total: -33.72 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.08 Total: -8.13 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.08 Total: -3.78 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.23 Total: -5.66 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.56 -8.81 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359365066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.671 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds