Wall clock time and date at job start Sat Apr 11 2020 01:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.55864 * 2 1 4 4 C 1.53000 * 117.49903 * 214.31234 * 2 1 3 5 5 H 1.09002 * 117.50113 * 0.02562 * 4 2 1 6 6 C 1.50704 * 117.49860 * 145.02198 * 4 2 1 7 7 O 1.21298 * 119.99851 * 359.90849 * 6 4 2 8 8 N 1.34781 * 119.99685 * 179.91489 * 6 4 2 9 9 C 1.40141 * 119.99325 * 184.47429 * 8 6 4 10 10 C 1.38647 * 120.10182 * 325.32471 * 9 8 6 11 11 C 1.38256 * 120.00685 * 180.28297 * 10 9 8 12 12 C 1.38295 * 120.20939 * 359.48324 * 11 10 9 13 13 C 1.38196 * 120.20006 * 0.51987 * 12 11 10 14 14 C 1.38784 * 119.99170 * 359.73906 * 13 12 11 15 15 S 1.76201 * 120.11009 * 179.97438 * 14 13 12 16 16 C 1.81402 * 102.99697 * 0.02562 * 15 14 13 17 17 C 1.50697 * 109.47065 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00160 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00033 * 179.97438 * 17 16 15 20 20 N 1.31525 * 120.00046 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46878 * 90.00033 * 21 19 17 23 23 H 1.48499 * 109.47280 * 210.00067 * 21 19 17 24 24 H 1.48499 * 109.47029 * 330.00411 * 21 19 17 25 25 C 1.52999 * 60.03127 * 252.52070 * 4 2 1 26 26 F 1.39900 * 117.49948 * 107.47921 * 25 4 2 27 27 F 1.39906 * 117.49929 * 252.49796 * 25 4 2 28 28 H 1.09002 * 109.47329 * 205.68872 * 1 2 3 29 29 H 1.08998 * 109.47678 * 325.68971 * 1 2 3 30 30 H 1.09006 * 109.47432 * 85.68892 * 1 2 3 31 31 H 0.96990 * 120.00062 * 4.47010 * 8 6 4 32 32 H 1.07998 * 119.99427 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.89041 * 179.74723 * 11 10 9 34 34 H 1.08003 * 119.90052 * 180.25688 * 12 11 10 35 35 H 1.08005 * 120.00408 * 179.76375 * 13 12 11 36 36 H 1.09008 * 109.47147 * 300.00253 * 16 15 14 37 37 H 1.09004 * 109.47341 * 59.99946 * 16 15 14 38 38 H 0.96998 * 119.99650 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7650 5 1 1.6112 -1.8582 -1.2687 6 6 3.5293 -0.7811 -1.4608 7 8 3.9710 0.3471 -1.4025 8 7 4.1946 -1.7307 -2.1480 9 6 5.4424 -1.4399 -2.7158 10 6 5.6979 -0.1749 -3.2227 11 6 6.9276 0.1081 -3.7877 12 6 7.9096 -0.8642 -3.8401 13 6 7.6642 -2.1279 -3.3376 14 6 6.4310 -2.4227 -2.7734 15 16 6.1145 -4.0332 -2.1323 16 6 7.6730 -4.9087 -2.4410 17 6 7.5607 -6.3257 -1.9407 18 1 6.6434 -6.6658 -1.4833 19 6 8.6287 -7.1884 -2.0680 20 7 9.7453 -6.7748 -2.6265 21 14 8.4898 -8.9448 -1.4473 22 1 7.9765 -9.8152 -2.5355 23 1 9.8277 -9.4255 -1.0183 24 1 7.5545 -8.9900 -0.2947 25 6 2.2367 -1.1218 0.7650 26 9 1.4340 -2.0685 1.4105 27 9 3.4371 -0.8070 1.4110 28 1 -0.3634 -0.9261 0.4455 29 1 -0.3634 0.8488 0.5792 30 1 -0.3634 0.0773 -1.0248 31 1 3.8098 -2.6152 -2.2493 32 1 4.9349 0.5882 -3.1797 33 1 7.1232 1.0929 -4.1857 34 1 8.8699 -0.6364 -4.2790 35 1 8.4322 -2.8859 -3.3836 36 1 7.8794 -4.9168 -3.5113 37 1 8.4843 -4.4017 -1.9185 38 1 10.4967 -7.3816 -2.7156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359365066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:40 Heat of formation + Delta-G solvation = -100.283955 kcal Electronic energy + Delta-G solvation = -24606.904807 eV Core-core repulsion = 20597.412033 eV Total energy + Delta-G solvation = -4009.492774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.87074 -48.55556 -41.74779 -39.70509 -37.47418 -35.99828 -35.34877 -32.20006 -31.12864 -30.63793 -29.55180 -25.87170 -25.27182 -24.07310 -23.15357 -22.17509 -21.40217 -19.67543 -19.14798 -18.46874 -18.15542 -17.98154 -17.46841 -17.11011 -16.84528 -16.34713 -15.94812 -15.82321 -15.23184 -15.12850 -14.89913 -14.79510 -14.75708 -14.68699 -14.47864 -14.27531 -14.00294 -13.85503 -13.74033 -13.16897 -12.80922 -12.76092 -12.73339 -12.56977 -11.95256 -11.80197 -11.66833 -11.56334 -11.24750 -11.01696 -10.96370 -10.86551 -10.55260 -9.44038 -8.38253 -8.26691 -6.52840 0.10548 0.28797 0.72453 0.96627 1.39418 1.40254 1.52259 1.66029 1.76748 1.87398 2.18545 2.33510 2.72594 2.97189 3.00145 3.11720 3.39799 3.64547 3.85415 4.09327 4.12545 4.32970 4.37009 4.44430 4.45253 4.49100 4.81049 4.82796 4.85931 4.87077 4.99218 5.12632 5.21884 5.29219 5.38217 5.49435 5.52243 5.78860 5.94539 6.16711 6.54149 6.80829 7.16241 8.73807 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.003528 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.094111 B = 7935.091735 C = 9832.723672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 H 0.141 0.859 4 C -0.189 4.189 5 H 0.185 0.815 6 C 0.544 3.456 7 O -0.536 6.536 8 N -0.653 5.653 9 C 0.140 3.860 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.135 4.135 14 C -0.116 4.116 15 S -0.155 6.155 16 C 0.082 3.918 17 C -0.543 4.543 18 H 0.067 0.933 19 C 0.019 3.981 20 N -0.921 5.921 21 Si 0.977 3.023 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.265 1.265 25 C 0.201 3.799 26 F -0.152 7.152 27 F -0.173 7.173 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.421 0.579 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.452 14.733 0.420 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.103 4.103 3 H 0.159 0.841 4 C -0.211 4.211 5 H 0.202 0.798 6 C 0.332 3.668 7 O -0.413 6.413 8 N -0.297 5.297 9 C 0.039 3.961 10 C -0.132 4.132 11 C -0.129 4.129 12 C -0.130 4.130 13 C -0.160 4.160 14 C -0.231 4.231 15 S 0.090 5.910 16 C -0.065 4.065 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.800 3.200 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.189 1.189 25 C 0.163 3.837 26 F -0.133 7.133 27 F -0.154 7.154 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.259 0.741 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.168 0.832 35 H 0.131 0.869 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.983 14.879 1.054 23.364 hybrid contribution 1.824 -1.327 -0.165 2.261 sum -16.159 13.552 0.889 21.108 Atomic orbital electron populations 1.21546 0.87193 1.04582 1.05101 1.23911 0.99296 0.94817 0.92308 0.84135 1.23929 0.97919 1.06940 0.92306 0.79759 1.19760 0.84914 0.84392 0.77742 1.90684 1.68094 1.21436 1.61105 1.43380 1.17807 1.16400 1.52156 1.17307 0.85052 0.94278 0.99422 1.21333 0.99418 0.94920 0.97570 1.21405 0.92112 1.00502 0.98889 1.21362 1.00809 0.91701 0.99092 1.21245 0.95243 0.98980 1.00509 1.21908 0.97018 0.98292 1.05891 1.84720 1.27438 1.03222 1.75642 1.20996 0.89662 0.97121 0.98722 1.20948 1.00733 0.94880 1.41602 0.91470 1.25899 0.94180 1.03667 0.94574 1.70054 1.04288 1.38050 1.43550 0.85261 0.77950 0.77781 0.79000 1.19180 1.20172 1.18877 1.20258 0.81448 0.95694 0.86266 1.93031 1.71564 1.65629 1.83044 1.93049 1.46098 1.92711 1.83535 0.90884 0.89071 0.88495 0.74107 0.83511 0.82050 0.83160 0.86917 0.95763 0.96279 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 10.16 71.98 0.73 -0.29 16 2 C -0.08 -1.26 5.91 -10.77 -0.06 -1.32 16 3 H 0.14 2.27 7.67 -2.39 -0.02 2.25 16 4 C -0.19 -3.44 5.89 -11.54 -0.07 -3.51 16 5 H 0.19 2.05 8.14 -2.39 -0.02 2.03 16 6 C 0.54 14.23 7.09 87.66 0.62 14.85 16 7 O -0.54 -16.56 13.68 -3.08 -0.04 -16.60 16 8 N -0.65 -18.49 5.02 -302.99 -1.52 -20.01 16 9 C 0.14 4.66 6.32 38.22 0.24 4.90 16 10 C -0.11 -3.29 8.70 22.37 0.19 -3.09 16 11 C -0.11 -2.81 10.04 22.29 0.22 -2.58 16 12 C -0.11 -3.20 10.04 22.27 0.22 -2.97 16 13 C -0.14 -5.05 9.36 22.39 0.21 -4.84 16 14 C -0.12 -4.47 6.12 22.71 0.14 -4.33 16 15 S -0.16 -6.70 20.72 -56.49 -1.17 -7.87 16 16 C 0.08 4.32 4.09 71.23 0.29 4.61 16 17 C -0.54 -30.28 9.13 25.60 0.23 -30.04 16 18 H 0.07 3.67 7.71 -2.91 -0.02 3.65 16 19 C 0.02 1.02 5.46 84.65 0.46 1.48 16 20 N -0.92 -53.24 13.29 21.45 0.28 -52.95 16 21 Si 0.98 42.74 29.54 68.60 2.03 44.77 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 25 C 0.20 4.37 5.14 30.62 0.16 4.52 16 26 F -0.15 -3.29 16.50 44.97 0.74 -2.54 16 27 F -0.17 -5.11 17.13 44.97 0.77 -4.34 16 28 H 0.07 0.62 7.10 -2.39 -0.02 0.60 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.42 10.69 7.97 -92.72 -0.74 9.95 16 32 H 0.15 4.10 6.20 -2.91 -0.02 4.09 16 33 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.11 4.68 5.88 -2.91 -0.02 4.66 16 36 H 0.02 1.33 7.75 -2.39 -0.02 1.31 16 37 H 0.02 1.07 7.75 -2.39 -0.02 1.05 16 38 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -68.47 347.52 5.06 -63.40 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.38 Total: 18.76 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 3.60 Total: -22.62 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.24 Total: -72.96 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.04 Total: -16.60 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 1.51 Total: -6.88 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -1.17 Total: -7.87 kcal Total: -68.47 5.06 -63.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359365066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.881 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds