Wall clock time and date at job start Sat Apr 11 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47414 * 2 1 4 4 C 1.46971 * 111.00193 * 57.79725 * 3 2 1 5 5 C 1.53181 * 109.62203 * 164.48167 * 4 3 2 6 6 C 1.52206 * 108.14959 * 50.45308 * 5 4 3 7 7 N 1.32480 * 124.97801 * 163.21199 * 6 5 4 8 8 C 1.29370 * 117.59724 * 180.02562 * 7 6 5 9 9 N 1.39002 * 124.94204 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00098 * 359.96064 * 9 8 7 11 11 O 1.21281 * 119.99708 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00105 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.46999 * 180.02562 * 12 10 9 14 14 C 1.76203 * 99.99607 * 180.02562 * 13 12 10 15 15 H 1.07993 * 120.00321 * 0.02562 * 14 13 12 16 16 C 1.38801 * 119.99563 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47008 * 90.00231 * 18 16 14 20 20 H 1.48501 * 109.47007 * 209.99730 * 18 16 14 21 21 H 1.48497 * 109.47261 * 329.99896 * 18 16 14 22 22 S 1.70937 * 110.11433 * 0.03158 * 8 7 6 23 23 C 1.34614 * 121.71155 * 343.23842 * 6 5 4 24 24 C 1.47216 * 110.99544 * 293.95172 * 3 2 1 25 25 H 1.09006 * 109.47282 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47563 * 300.00577 * 1 2 3 27 27 H 1.09006 * 109.46790 * 60.00511 * 1 2 3 28 28 H 1.09003 * 109.47563 * 239.99422 * 2 1 3 29 29 H 1.09007 * 109.47275 * 119.99696 * 2 1 3 30 30 H 1.09004 * 109.44526 * 284.52822 * 4 3 2 31 31 H 1.09006 * 109.44537 * 44.42978 * 4 3 2 32 32 H 1.08998 * 109.72922 * 170.12381 * 5 4 3 33 33 H 1.09007 * 109.72386 * 290.79414 * 5 4 3 34 34 H 0.96993 * 120.00434 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47344 * 300.00368 * 12 10 9 36 36 H 1.08999 * 109.46834 * 60.00166 * 12 10 9 37 37 H 0.96995 * 119.99777 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.64239 * 294.23564 * 24 3 2 39 39 H 1.08997 * 109.64075 * 54.86306 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5059 2.1254 1.1610 5 6 2.3171 3.4107 1.3515 6 6 2.3731 4.1383 0.0157 7 7 2.7051 5.4110 -0.1424 8 6 2.7053 5.8852 -1.3461 9 7 3.0280 7.1938 -1.6863 10 6 3.3728 8.0743 -0.7258 11 8 3.4020 7.7246 0.4351 12 6 3.7221 9.4931 -1.0945 13 16 4.1385 10.4206 0.4030 14 6 4.4936 11.9960 -0.3017 15 1 4.4168 12.1397 -1.3693 16 6 4.8720 13.0523 0.5153 17 7 4.9652 12.8773 1.8166 18 14 5.2478 14.7227 -0.2317 19 1 4.0044 15.5330 -0.2829 20 1 6.2597 15.4210 0.6011 21 1 5.7780 14.5419 -1.6070 22 16 2.2507 4.6684 -2.4573 23 6 2.0779 3.5170 -1.1414 24 6 1.6695 2.0683 -1.2561 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.4586 2.3783 0.9956 31 1 1.5925 1.5059 2.0537 32 1 1.8338 4.0439 2.0955 33 1 3.3271 3.1633 1.6783 34 1 3.0048 7.4734 -2.6147 35 1 4.5769 9.4929 -1.7708 36 1 2.8696 9.9609 -1.5868 37 1 5.2300 13.6153 2.3875 38 1 2.1999 1.6027 -2.0866 39 1 0.5941 2.0027 -1.4213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363417728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:50 Heat of formation + Delta-G solvation = 26.085915 kcal Electronic energy + Delta-G solvation = -22196.757021 eV Core-core repulsion = 18778.877194 eV Total energy + Delta-G solvation = -3417.879828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59086 -39.46173 -37.88504 -34.81492 -32.71398 -32.46418 -31.06858 -29.81304 -28.58578 -25.62777 -25.22748 -24.45143 -23.47086 -21.91426 -20.36237 -19.05079 -18.16632 -17.62049 -16.89777 -16.37530 -15.80714 -15.62696 -15.38192 -15.09072 -14.83416 -14.46526 -14.23000 -14.15902 -13.71412 -13.40521 -13.06420 -12.95691 -12.63992 -12.58175 -12.33648 -12.27577 -11.92420 -11.56964 -11.22550 -11.09113 -11.06067 -10.99069 -10.80951 -10.36463 -10.00512 -9.87041 -9.28810 -9.09862 -9.08805 -8.67920 -8.30379 -8.04048 -6.55573 -6.25005 -3.96754 0.71167 0.89530 1.55742 2.67222 2.77893 3.19371 3.20854 3.21913 3.28223 3.46194 3.54107 4.15119 4.22261 4.47698 4.57648 4.77281 4.85611 4.89971 4.96808 4.99167 5.07364 5.10323 5.17736 5.37523 5.44264 5.46780 5.51799 5.56849 5.71679 5.73550 5.75801 5.81322 6.00724 6.05347 6.35034 6.61019 6.67620 7.08010 7.56331 7.91559 8.31556 8.39039 9.20165 10.82376 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.002246 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.345117 B =12464.828359 C =13082.769614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.054 3.946 5 C -0.036 4.036 6 C 0.115 3.885 7 N -0.476 5.476 8 C 0.292 3.708 9 N -0.640 5.640 10 C 0.522 3.478 11 O -0.444 6.444 12 C -0.150 4.150 13 S -0.053 6.053 14 C -0.537 4.537 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.866 5.866 18 Si 0.920 3.080 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 S 0.112 5.888 23 C -0.267 4.267 24 C 0.142 3.858 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.420 0.580 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.269 0.731 38 H 0.087 0.913 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 -24.798 -9.269 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.077 4.077 3 N -0.256 5.256 4 C -0.074 4.074 5 C -0.076 4.076 6 C -0.017 4.017 7 N -0.197 5.197 8 C -0.078 4.078 9 N -0.293 5.293 10 C 0.306 3.694 11 O -0.309 6.309 12 C -0.301 4.301 13 S 0.173 5.827 14 C -0.685 4.685 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.501 5.501 18 Si 0.746 3.254 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 S 0.364 5.636 23 C -0.389 4.389 24 C 0.013 3.987 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.257 0.743 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.279 -24.845 -7.757 27.313 hybrid contribution -0.666 1.437 -1.685 2.313 sum -8.946 -23.408 -9.442 26.779 Atomic orbital electron populations 1.22478 0.98088 1.02565 1.02315 1.22193 0.92947 0.89259 1.03294 1.62363 1.59291 1.02064 1.01896 1.22166 0.96796 0.94697 0.93728 1.20484 1.02257 0.93471 0.91399 1.20626 0.97750 0.87244 0.96109 1.66036 1.20797 1.12894 1.19926 1.23455 1.00901 0.91571 0.91823 1.43468 1.67986 1.05618 1.12223 1.20756 0.76669 0.86624 0.85396 1.90828 1.44810 1.77461 1.17771 1.23550 1.04827 0.93457 1.08278 1.85501 1.88364 1.06045 1.02800 1.22853 1.53934 0.95805 0.95955 0.90772 1.25004 0.94730 0.99129 0.94721 1.70012 1.44370 1.32552 1.03212 0.86146 0.78277 0.81974 0.78970 1.20243 1.20722 1.19662 1.83538 1.67423 1.02076 1.10554 1.25493 1.17916 1.00957 0.94523 1.20427 0.98470 0.86816 0.93020 0.91874 0.92190 0.92446 0.90443 0.90081 0.93862 0.89583 0.89046 0.88950 0.74258 0.88636 0.88657 0.92098 0.89440 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 9.25 37.15 0.34 -0.71 16 2 C 0.05 0.31 6.02 -3.83 -0.02 0.29 16 3 N -0.53 -4.61 4.87 -235.46 -1.15 -5.76 16 4 C 0.05 0.47 4.51 -3.69 -0.02 0.46 16 5 C -0.04 -0.42 6.52 -27.04 -0.18 -0.59 16 6 C 0.12 1.66 6.86 -82.85 -0.57 1.09 16 7 N -0.48 -8.41 8.61 -10.50 -0.09 -8.50 16 8 C 0.29 4.45 8.02 -87.55 -0.70 3.75 16 9 N -0.64 -9.31 5.40 -13.13 -0.07 -9.38 16 10 C 0.52 10.00 7.81 -10.98 -0.09 9.92 16 11 O -0.44 -10.49 14.50 5.56 0.08 -10.41 16 12 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 13 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16 14 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 18 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 S 0.11 1.24 23.20 -107.50 -2.49 -1.26 16 23 C -0.27 -3.19 6.47 -35.47 -0.23 -3.42 16 24 C 0.14 1.28 5.65 -4.68 -0.03 1.25 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.35 6.73 -51.93 -0.35 0.00 16 27 H 0.06 0.33 6.45 -51.93 -0.34 0.00 16 28 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.04 0.38 7.11 -51.93 -0.37 0.01 16 31 H 0.09 0.59 7.99 -51.93 -0.41 0.18 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.42 4.23 8.82 -40.82 -0.36 3.87 16 35 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.43 6.27 -51.93 -0.33 0.10 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -35.86 348.09 -11.12 -46.98 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.08 Total: -0.71 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.06 Total: -3.50 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.57 Total: -48.90 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -4.71 Total: -4.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.86 -11.12 -46.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363417728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.063 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds