Wall clock time and date at job start Sat Apr 11 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47414 * 2 1 4 4 C 1.46971 * 111.00193 * 57.79725 * 3 2 1 5 5 C 1.53181 * 109.62203 * 164.48167 * 4 3 2 6 6 C 1.52206 * 108.14959 * 50.45308 * 5 4 3 7 7 N 1.32480 * 124.97801 * 163.21199 * 6 5 4 8 8 C 1.29370 * 117.59724 * 180.02562 * 7 6 5 9 9 N 1.39002 * 124.94204 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00098 * 359.96064 * 9 8 7 11 11 O 1.21281 * 119.99708 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00105 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.46999 * 180.02562 * 12 10 9 14 14 C 1.76203 * 99.99607 * 180.02562 * 13 12 10 15 15 H 1.07993 * 120.00321 * 0.02562 * 14 13 12 16 16 C 1.38801 * 119.99563 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47008 * 90.00231 * 18 16 14 20 20 H 1.48501 * 109.47007 * 209.99730 * 18 16 14 21 21 H 1.48497 * 109.47261 * 329.99896 * 18 16 14 22 22 S 1.70937 * 110.11433 * 0.03158 * 8 7 6 23 23 C 1.34614 * 121.71155 * 343.23842 * 6 5 4 24 24 C 1.47216 * 110.99544 * 293.95172 * 3 2 1 25 25 H 1.09006 * 109.47282 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47563 * 300.00577 * 1 2 3 27 27 H 1.09006 * 109.46790 * 60.00511 * 1 2 3 28 28 H 1.09003 * 109.47563 * 239.99422 * 2 1 3 29 29 H 1.09007 * 109.47275 * 119.99696 * 2 1 3 30 30 H 1.09004 * 109.44526 * 284.52822 * 4 3 2 31 31 H 1.09006 * 109.44537 * 44.42978 * 4 3 2 32 32 H 1.08998 * 109.72922 * 170.12381 * 5 4 3 33 33 H 1.09007 * 109.72386 * 290.79414 * 5 4 3 34 34 H 0.96993 * 120.00434 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47344 * 300.00368 * 12 10 9 36 36 H 1.08999 * 109.46834 * 60.00166 * 12 10 9 37 37 H 0.96995 * 119.99777 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.64239 * 294.23564 * 24 3 2 39 39 H 1.08997 * 109.64075 * 54.86306 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5059 2.1254 1.1610 5 6 2.3171 3.4107 1.3515 6 6 2.3731 4.1383 0.0157 7 7 2.7051 5.4110 -0.1424 8 6 2.7053 5.8852 -1.3461 9 7 3.0280 7.1938 -1.6863 10 6 3.3728 8.0743 -0.7258 11 8 3.4020 7.7246 0.4351 12 6 3.7221 9.4931 -1.0945 13 16 4.1385 10.4206 0.4030 14 6 4.4936 11.9960 -0.3017 15 1 4.4168 12.1397 -1.3693 16 6 4.8720 13.0523 0.5153 17 7 4.9652 12.8773 1.8166 18 14 5.2478 14.7227 -0.2317 19 1 4.0044 15.5330 -0.2829 20 1 6.2597 15.4210 0.6011 21 1 5.7780 14.5419 -1.6070 22 16 2.2507 4.6684 -2.4573 23 6 2.0779 3.5170 -1.1414 24 6 1.6695 2.0683 -1.2561 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.4586 2.3783 0.9956 31 1 1.5925 1.5059 2.0537 32 1 1.8338 4.0439 2.0955 33 1 3.3271 3.1633 1.6783 34 1 3.0048 7.4734 -2.6147 35 1 4.5769 9.4929 -1.7708 36 1 2.8696 9.9609 -1.5868 37 1 5.2300 13.6153 2.3875 38 1 2.1999 1.6027 -2.0866 39 1 0.5941 2.0027 -1.4213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363417728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:49:50 Heat of formation + Delta-G solvation = 0.153534 kcal Electronic energy + Delta-G solvation = -22197.881533 eV Core-core repulsion = 18778.877194 eV Total energy + Delta-G solvation = -3419.004340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70198 -40.60990 -38.82578 -36.08524 -34.59440 -33.54828 -31.88579 -31.17539 -29.44258 -27.71023 -26.21816 -25.29097 -24.42599 -22.78910 -21.39934 -20.39771 -19.50779 -19.06574 -17.94966 -17.62076 -17.03058 -16.88767 -16.55255 -16.28581 -16.06514 -15.84037 -15.32114 -15.08197 -14.98975 -14.54186 -14.48402 -13.98229 -13.70399 -13.47218 -13.28642 -13.18134 -12.92091 -12.89711 -12.84172 -12.63586 -12.24307 -11.92583 -11.76714 -11.70618 -11.46474 -11.42128 -11.14925 -10.34166 -10.28653 -10.23154 -9.33933 -9.06507 -8.69517 -8.35554 -6.14597 -0.34787 -0.12855 0.56255 1.22389 1.37341 1.42937 1.44363 1.55826 1.95355 1.96982 2.25457 2.89986 2.98994 3.04694 3.36113 3.71481 3.84238 4.05147 4.08285 4.23135 4.23740 4.29126 4.35557 4.43791 4.47477 4.54808 4.64414 4.70020 4.82359 4.86651 5.01622 5.06254 5.09318 5.29597 5.36063 5.41667 5.91190 5.96479 6.11829 6.19273 6.77097 7.05687 7.11519 8.73694 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.002246 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.345117 B =12464.828359 C =13082.769614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 N -0.545 5.545 4 C 0.064 3.936 5 C -0.037 4.037 6 C 0.076 3.924 7 N -0.525 5.525 8 C 0.246 3.754 9 N -0.621 5.621 10 C 0.528 3.472 11 O -0.500 6.500 12 C -0.123 4.123 13 S -0.150 6.150 14 C -0.544 4.544 15 H 0.088 0.912 16 C 0.011 3.989 17 N -0.912 5.912 18 Si 1.001 2.999 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.256 1.256 22 S 0.211 5.789 23 C -0.258 4.258 24 C 0.141 3.859 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.441 0.559 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.271 0.729 38 H 0.106 0.894 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 -26.249 -12.563 30.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.075 4.075 3 N -0.270 5.270 4 C -0.064 4.064 5 C -0.078 4.078 6 C -0.056 4.056 7 N -0.247 5.247 8 C -0.122 4.122 9 N -0.276 5.276 10 C 0.311 3.689 11 O -0.370 6.370 12 C -0.275 4.275 13 S 0.077 5.923 14 C -0.692 4.692 15 H 0.106 0.894 16 C -0.193 4.193 17 N -0.549 5.549 18 Si 0.822 3.178 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.180 1.180 22 S 0.463 5.537 23 C -0.381 4.381 24 C 0.011 3.989 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.283 0.717 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.105 -26.337 -11.123 30.004 hybrid contribution -0.485 1.643 -0.767 1.877 sum -9.590 -24.694 -11.890 29.037 Atomic orbital electron populations 1.22436 0.97493 1.03223 1.01894 1.22264 0.93380 0.87626 1.04225 1.62353 1.59934 1.03155 1.01525 1.22075 0.96014 0.93524 0.94783 1.20531 1.02156 0.94645 0.90421 1.20938 0.99870 0.86840 0.97910 1.65987 1.21437 1.14891 1.22362 1.23675 1.03078 0.92302 0.93180 1.42963 1.67025 1.05286 1.12329 1.20569 0.76141 0.86878 0.85268 1.90815 1.47608 1.78397 1.20133 1.23347 1.06741 0.92972 1.04409 1.85734 1.89067 1.08215 1.09290 1.23206 1.53609 0.95836 0.96573 0.89434 1.26165 0.94302 1.03763 0.95087 1.70189 1.45676 1.33964 1.05028 0.84922 0.78260 0.76080 0.78519 1.19315 1.20473 1.17973 1.83102 1.64824 0.98578 1.07199 1.26151 1.14765 1.02648 0.94522 1.20620 0.99556 0.84881 0.93863 0.90704 0.92775 0.92656 0.89338 0.89415 0.93763 0.87821 0.90350 0.89929 0.71741 0.86115 0.86061 0.92006 0.87638 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 9.25 71.98 0.67 -0.89 16 2 C 0.05 0.49 6.02 86.30 0.52 1.01 16 3 N -0.55 -8.30 4.87 -898.87 -4.37 -12.67 16 4 C 0.06 1.06 4.51 86.35 0.39 1.45 16 5 C -0.04 -0.91 6.52 30.39 0.20 -0.71 16 6 C 0.08 2.22 6.86 42.11 0.29 2.51 16 7 N -0.53 -19.11 8.61 -187.12 -1.61 -20.72 16 8 C 0.25 7.35 8.02 179.28 1.44 8.79 16 9 N -0.62 -17.60 5.40 -313.83 -1.70 -19.29 16 10 C 0.53 20.49 7.81 87.66 0.68 21.18 16 11 O -0.50 -24.86 14.50 -3.03 -0.04 -24.91 16 12 C -0.12 -4.78 6.16 71.24 0.44 -4.34 16 13 S -0.15 -8.34 20.57 -56.49 -1.16 -9.51 16 14 C -0.54 -30.77 9.50 67.95 0.65 -30.12 16 15 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 16 C 0.01 0.65 5.49 84.86 0.47 1.12 16 17 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 18 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 S 0.21 4.09 23.20 -56.49 -1.31 2.78 16 23 C -0.26 -5.72 6.47 24.94 0.16 -5.56 16 24 C 0.14 2.12 5.65 85.58 0.48 2.60 16 25 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.05 0.51 6.73 -2.39 -0.02 0.50 16 27 H 0.05 0.48 6.45 -2.38 -0.02 0.46 16 28 H 0.09 0.66 8.12 -2.39 -0.02 0.64 16 29 H 0.09 0.73 8.13 -2.38 -0.02 0.71 16 30 H 0.04 0.72 7.11 -2.38 -0.02 0.70 16 31 H 0.10 1.30 7.99 -2.38 -0.02 1.29 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.44 7.95 8.82 -92.71 -0.82 7.13 16 35 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 36 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 0.87 6.27 -2.39 -0.01 0.86 16 Total: -1.00 -82.52 348.09 -1.24 -83.76 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.27 Total: 14.12 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 6.38 Total: -2.98 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -7.40 Total: -108.68 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -2.47 Total: -6.73 kcal Total: -82.52 -1.24 -83.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363417728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.911 kcal (2) G-P(sol) polarization free energy of solvation -82.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds