Wall clock time and date at job start Sat Apr 11 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.50708 * 109.46737 * 119.99833 * 2 1 3 5 5 C 1.38234 * 119.98654 * 61.25230 * 4 2 1 6 6 C 1.38215 * 120.00974 * 179.72559 * 5 4 2 7 7 C 1.38352 * 119.98816 * 0.54618 * 6 5 4 8 8 Cl 1.73597 * 120.01272 * 179.70576 * 7 6 5 9 9 C 1.38346 * 119.97186 * 359.72907 * 7 6 5 10 10 C 1.38218 * 119.99045 * 359.97438 * 9 7 6 11 11 N 1.46500 * 109.47238 * 239.99691 * 2 1 3 12 12 C 1.46498 * 119.99949 * 306.15427 * 11 2 1 13 13 C 1.34768 * 120.00014 * 126.15803 * 11 2 1 14 14 O 1.21281 * 120.00082 * 359.97438 * 13 11 2 15 15 C 1.50708 * 119.99960 * 179.72861 * 13 11 2 16 16 S 1.81406 * 109.47034 * 180.27262 * 15 13 11 17 17 C 1.81404 * 102.99615 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46656 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00227 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99852 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99877 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46927 * 90.00623 * 22 20 18 24 24 H 1.48504 * 109.46973 * 210.00563 * 22 20 18 25 25 H 1.48494 * 109.46906 * 330.00612 * 22 20 18 26 26 H 1.09003 * 109.47380 * 300.00335 * 1 2 3 27 27 H 1.09001 * 109.46501 * 59.99942 * 1 2 3 28 28 H 1.08998 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.99655 * 0.02562 * 5 4 2 30 30 H 1.08004 * 120.00592 * 180.27327 * 6 5 4 31 31 H 1.08003 * 120.00930 * 179.97438 * 9 7 6 32 32 H 1.08000 * 119.99786 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47759 * 273.78264 * 12 11 2 34 34 H 1.09004 * 109.47106 * 33.77750 * 12 11 2 35 35 H 1.08999 * 109.47372 * 153.77805 * 12 11 2 36 36 H 1.08997 * 109.46597 * 300.26901 * 15 13 11 37 37 H 1.08995 * 109.47355 * 60.26978 * 15 13 11 38 38 H 1.09002 * 109.46895 * 299.99603 * 17 16 15 39 39 H 1.09000 * 109.47121 * 59.99967 * 17 16 15 40 40 H 0.96997 * 119.99840 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.7196 -2.0412 1.4361 6 6 2.1847 -2.6947 2.5616 7 6 2.9539 -2.0138 3.4883 8 17 3.5320 -2.8320 4.9061 9 6 3.2617 -0.6804 3.2849 10 6 2.8012 -0.0295 2.1559 11 7 2.0184 -0.6907 -1.1961 12 6 1.5569 -2.0479 -1.4980 13 6 2.8922 -0.0775 -2.0187 14 8 3.2740 1.0462 -1.7690 15 6 3.3993 -0.7903 -3.2459 16 16 4.5573 0.2862 -4.1353 17 6 5.0502 -0.7296 -5.5551 18 6 6.0279 0.0384 -6.4068 19 1 6.3235 1.0374 -6.1222 20 6 6.5458 -0.5347 -7.5489 21 7 6.1862 -1.7515 -7.8952 22 14 7.7572 0.4174 -8.6050 23 1 9.1406 0.1446 -8.1396 24 1 7.6187 -0.0066 -10.0215 25 1 7.4749 1.8710 -8.4935 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.1158 -2.5716 0.7146 30 1 1.9440 -3.7356 2.7199 31 1 3.8617 -0.1481 4.0082 32 1 3.0417 1.0113 1.9968 33 1 2.1845 -2.7698 -0.9755 34 1 0.5233 -2.1614 -1.1709 35 1 1.6192 -2.2224 -2.5721 36 1 3.9099 -1.7064 -2.9489 37 1 2.5598 -1.0367 -3.8959 38 1 5.5196 -1.6470 -5.2000 39 1 4.1695 -0.9778 -6.1475 40 1 6.5503 -2.1546 -8.6988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:00 Heat of formation + Delta-G solvation = -18.758274 kcal Electronic energy + Delta-G solvation = -22255.450895 eV Core-core repulsion = 18801.290021 eV Total energy + Delta-G solvation = -3454.160875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56078 -39.15932 -36.97865 -35.98301 -33.13880 -32.88308 -31.46514 -29.83493 -28.95317 -28.43628 -27.30425 -23.95328 -23.15086 -23.05892 -21.43599 -19.33742 -17.51843 -17.22516 -16.76119 -16.31849 -15.88238 -15.62972 -15.29143 -14.96363 -14.38270 -14.34174 -14.03685 -13.87378 -13.62917 -13.40990 -12.88446 -12.71890 -12.62002 -12.50931 -12.43034 -12.26104 -12.05053 -11.86556 -11.79843 -11.55754 -11.28858 -11.10420 -10.86990 -10.70337 -10.02745 -9.77332 -9.55686 -9.38452 -8.94747 -8.84495 -8.76171 -8.60700 -6.64552 -6.19293 -4.22853 0.73613 0.94518 1.79652 2.30432 2.69884 2.97485 3.27617 3.33011 3.36598 3.39321 3.83291 4.25631 4.36727 4.38977 4.52879 4.63507 4.80722 4.88254 4.94835 4.96281 5.09858 5.18205 5.19273 5.26854 5.36430 5.41782 5.46239 5.53348 5.60297 5.65174 5.76741 5.87256 5.89496 6.15489 6.37511 6.43047 7.08028 7.08947 7.21341 7.76213 8.01888 8.20421 8.79355 9.40209 10.92278 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.002290 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.618805 B =12222.348391 C =12793.843597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.088 4.088 5 C -0.100 4.100 6 C -0.112 4.112 7 C -0.035 4.035 8 Cl -0.074 7.074 9 C -0.109 4.109 10 C -0.090 4.090 11 N -0.613 5.613 12 C 0.068 3.932 13 C 0.537 3.463 14 O -0.512 6.512 15 C -0.128 4.128 16 S -0.237 6.237 17 C 0.075 3.925 18 C -0.509 4.509 19 H 0.068 0.932 20 C 0.065 3.935 21 N -0.894 5.894 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.270 1.270 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -3.884 22.555 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.072 3.928 3 H 0.130 0.870 4 C -0.089 4.089 5 C -0.118 4.118 6 C -0.130 4.130 7 C -0.061 4.061 8 Cl -0.045 7.045 9 C -0.128 4.128 10 C -0.109 4.109 11 N -0.348 5.348 12 C -0.075 4.075 13 C 0.324 3.676 14 O -0.386 6.386 15 C -0.279 4.279 16 S -0.011 6.011 17 C -0.072 4.072 18 C -0.549 4.549 19 H 0.086 0.914 20 C -0.139 4.139 21 N -0.533 5.533 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.195 1.195 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.237 -2.459 22.929 26.590 hybrid contribution 0.294 -1.299 -0.783 1.545 sum -12.943 -3.758 22.146 25.924 Atomic orbital electron populations 1.22152 0.93690 1.02674 1.03072 1.19918 0.94256 0.97448 0.81133 0.87038 1.20289 0.97822 0.94644 0.96172 1.21142 0.99677 0.94150 0.96820 1.21043 0.97899 1.00413 0.93676 1.20971 1.00974 0.93589 0.90589 1.98375 1.87788 1.79112 1.39254 1.21068 1.00451 0.92753 0.98525 1.21104 0.96222 1.00587 0.93008 1.47836 1.46089 1.16631 1.24267 1.21990 1.00050 0.83009 1.02478 1.20063 0.77801 0.86181 0.83553 1.90709 1.56178 1.18470 1.73221 1.23402 1.03383 1.03254 0.97818 1.87249 1.54688 1.27982 1.31196 1.21162 0.99411 0.96065 0.90576 1.20648 1.25182 1.01690 1.07360 0.91402 1.24960 0.96683 0.95082 0.97147 1.69954 1.43859 1.14013 1.25431 0.86343 0.80960 0.80245 0.79089 1.20331 1.20992 1.19486 0.91036 0.91380 0.91933 0.84796 0.84914 0.84810 0.84716 0.92235 0.90796 0.90214 0.88151 0.88079 0.94676 0.94656 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.85 37.16 0.33 -0.83 16 2 C 0.18 1.75 2.95 -69.08 -0.20 1.55 16 3 H 0.11 1.32 6.66 -51.93 -0.35 0.97 16 4 C -0.09 -0.83 4.98 -104.62 -0.52 -1.35 16 5 C -0.10 -0.81 8.00 -39.59 -0.32 -1.12 16 6 C -0.11 -0.92 9.83 -39.55 -0.39 -1.31 16 7 C -0.03 -0.32 6.32 -39.50 -0.25 -0.56 16 8 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 9 C -0.11 -0.99 9.83 -39.55 -0.39 -1.37 16 10 C -0.09 -0.86 9.67 -39.59 -0.38 -1.24 16 11 N -0.61 -7.01 2.75 -175.26 -0.48 -7.49 16 12 C 0.07 0.54 8.27 59.85 0.49 1.04 16 13 C 0.54 8.54 7.69 -10.99 -0.08 8.46 16 14 O -0.51 -10.05 15.20 5.56 0.08 -9.97 16 15 C -0.13 -2.13 4.92 36.01 0.18 -1.95 16 16 S -0.24 -5.39 20.79 -107.50 -2.24 -7.62 16 17 C 0.07 1.94 5.70 36.01 0.21 2.15 16 18 C -0.51 -14.50 9.13 -34.44 -0.31 -14.81 16 19 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 20 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 22 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.37 5.86 -51.93 -0.30 0.07 16 29 H 0.13 0.83 5.15 -52.49 -0.27 0.56 16 30 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.13 1.17 7.95 -52.49 -0.42 0.75 16 33 H 0.06 0.44 7.10 -51.93 -0.37 0.08 16 34 H 0.07 0.41 5.58 -51.93 -0.29 0.12 16 35 H 0.08 0.63 6.31 -51.93 -0.33 0.30 16 36 H 0.10 1.53 8.10 -51.93 -0.42 1.11 16 37 H 0.10 1.49 7.42 -51.93 -0.39 1.10 16 38 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -32.72 358.27 -9.97 -42.69 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.21 Total: -2.56 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.74 Total: -9.63 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.25 Total: -32.66 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -2.24 Total: -7.62 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.72 -9.97 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.931 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds