Wall clock time and date at job start Sat Apr 11 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.50708 * 109.46737 * 119.99833 * 2 1 3 5 5 C 1.38234 * 119.98654 * 61.25230 * 4 2 1 6 6 C 1.38215 * 120.00974 * 179.72559 * 5 4 2 7 7 C 1.38352 * 119.98816 * 0.54618 * 6 5 4 8 8 Cl 1.73597 * 120.01272 * 179.70576 * 7 6 5 9 9 C 1.38346 * 119.97186 * 359.72907 * 7 6 5 10 10 C 1.38218 * 119.99045 * 359.97438 * 9 7 6 11 11 N 1.46500 * 109.47238 * 239.99691 * 2 1 3 12 12 C 1.46498 * 119.99949 * 306.15427 * 11 2 1 13 13 C 1.34768 * 120.00014 * 126.15803 * 11 2 1 14 14 O 1.21281 * 120.00082 * 359.97438 * 13 11 2 15 15 C 1.50708 * 119.99960 * 179.72861 * 13 11 2 16 16 S 1.81406 * 109.47034 * 180.27262 * 15 13 11 17 17 C 1.81404 * 102.99615 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46656 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00227 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99852 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99877 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46927 * 90.00623 * 22 20 18 24 24 H 1.48504 * 109.46973 * 210.00563 * 22 20 18 25 25 H 1.48494 * 109.46906 * 330.00612 * 22 20 18 26 26 H 1.09003 * 109.47380 * 300.00335 * 1 2 3 27 27 H 1.09001 * 109.46501 * 59.99942 * 1 2 3 28 28 H 1.08998 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.99655 * 0.02562 * 5 4 2 30 30 H 1.08004 * 120.00592 * 180.27327 * 6 5 4 31 31 H 1.08003 * 120.00930 * 179.97438 * 9 7 6 32 32 H 1.08000 * 119.99786 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47759 * 273.78264 * 12 11 2 34 34 H 1.09004 * 109.47106 * 33.77750 * 12 11 2 35 35 H 1.08999 * 109.47372 * 153.77805 * 12 11 2 36 36 H 1.08997 * 109.46597 * 300.26901 * 15 13 11 37 37 H 1.08995 * 109.47355 * 60.26978 * 15 13 11 38 38 H 1.09002 * 109.46895 * 299.99603 * 17 16 15 39 39 H 1.09000 * 109.47121 * 59.99967 * 17 16 15 40 40 H 0.96997 * 119.99840 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.7196 -2.0412 1.4361 6 6 2.1847 -2.6947 2.5616 7 6 2.9539 -2.0138 3.4883 8 17 3.5320 -2.8320 4.9061 9 6 3.2617 -0.6804 3.2849 10 6 2.8012 -0.0295 2.1559 11 7 2.0184 -0.6907 -1.1961 12 6 1.5569 -2.0479 -1.4980 13 6 2.8922 -0.0775 -2.0187 14 8 3.2740 1.0462 -1.7690 15 6 3.3993 -0.7903 -3.2459 16 16 4.5573 0.2862 -4.1353 17 6 5.0502 -0.7296 -5.5551 18 6 6.0279 0.0384 -6.4068 19 1 6.3235 1.0374 -6.1222 20 6 6.5458 -0.5347 -7.5489 21 7 6.1862 -1.7515 -7.8952 22 14 7.7572 0.4174 -8.6050 23 1 9.1406 0.1446 -8.1396 24 1 7.6187 -0.0066 -10.0215 25 1 7.4749 1.8710 -8.4935 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.1158 -2.5716 0.7146 30 1 1.9440 -3.7356 2.7199 31 1 3.8617 -0.1481 4.0082 32 1 3.0417 1.0113 1.9968 33 1 2.1845 -2.7698 -0.9755 34 1 0.5233 -2.1614 -1.1709 35 1 1.6192 -2.2224 -2.5721 36 1 3.9099 -1.7064 -2.9489 37 1 2.5598 -1.0367 -3.8959 38 1 5.5196 -1.6470 -5.2000 39 1 4.1695 -0.9778 -6.1475 40 1 6.5503 -2.1546 -8.6988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:00 Heat of formation + Delta-G solvation = -36.299967 kcal Electronic energy + Delta-G solvation = -22256.211560 eV Core-core repulsion = 18801.290021 eV Total energy + Delta-G solvation = -3454.921540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46765 -40.07687 -37.75267 -36.88924 -35.28312 -33.77041 -32.13065 -30.89785 -30.55775 -29.79023 -28.06298 -25.27608 -24.61863 -23.79786 -22.29892 -20.31410 -18.67947 -18.35663 -18.18244 -17.57842 -17.03430 -16.82576 -16.44162 -16.20403 -15.79028 -15.13911 -14.89770 -14.73492 -14.54029 -14.47115 -14.37792 -14.28473 -14.07100 -13.57432 -13.42582 -13.22092 -13.17265 -12.73914 -12.72827 -12.56560 -12.49763 -12.25795 -12.04133 -11.96351 -11.76960 -11.59137 -11.00218 -10.73948 -10.62251 -10.04526 -9.78771 -9.64318 -8.48956 -8.33448 -6.45469 0.03322 0.28719 0.76340 1.12134 1.40572 1.41448 1.47367 1.53984 1.95398 2.00587 2.37500 2.64392 3.01416 3.43840 3.62797 3.75158 3.91096 4.02914 4.10477 4.17455 4.24487 4.28371 4.34040 4.46122 4.63100 4.65680 4.77426 4.85862 4.91063 4.94528 4.96506 4.99101 5.15953 5.21425 5.26456 5.41178 5.56617 5.57879 5.77029 5.90182 6.18797 6.61078 7.03224 7.22118 8.78587 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.002290 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.618805 B =12222.348391 C =12793.843597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.174 3.826 3 H 0.085 0.915 4 C -0.097 4.097 5 C -0.095 4.095 6 C -0.113 4.113 7 C -0.045 4.045 8 Cl -0.074 7.074 9 C -0.117 4.117 10 C -0.105 4.105 11 N -0.599 5.599 12 C 0.054 3.946 13 C 0.534 3.466 14 O -0.561 6.561 15 C -0.111 4.111 16 S -0.277 6.277 17 C 0.086 3.914 18 C -0.538 4.538 19 H 0.057 0.943 20 C 0.018 3.982 21 N -0.922 5.922 22 Si 0.974 3.026 23 H -0.269 1.269 24 H -0.273 1.273 25 H -0.269 1.269 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.019 0.981 39 H 0.022 0.978 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 -5.240 23.065 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.072 3.928 3 H 0.104 0.896 4 C -0.098 4.098 5 C -0.113 4.113 6 C -0.131 4.131 7 C -0.072 4.072 8 Cl -0.045 7.045 9 C -0.136 4.136 10 C -0.124 4.124 11 N -0.332 5.332 12 C -0.087 4.087 13 C 0.321 3.679 14 O -0.439 6.439 15 C -0.262 4.262 16 S -0.051 6.051 17 C -0.061 4.061 18 C -0.576 4.576 19 H 0.075 0.925 20 C -0.183 4.183 21 N -0.561 5.561 22 Si 0.797 3.203 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.193 1.193 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.468 -3.854 23.463 27.833 hybrid contribution 0.570 -0.946 -0.798 1.363 sum -13.898 -4.800 22.664 27.016 Atomic orbital electron populations 1.22120 0.91203 1.04194 1.03335 1.19999 0.96017 0.96116 0.80715 0.89641 1.20275 0.98308 0.95378 0.95821 1.21371 0.99368 0.93436 0.97125 1.21318 0.97200 1.01328 0.93270 1.21150 1.01338 0.93718 0.90961 1.98374 1.87830 1.79006 1.39282 1.21193 1.00655 0.93086 0.98631 1.21211 0.96765 1.00818 0.93581 1.47854 1.44139 1.17678 1.23533 1.22357 1.02183 0.80946 1.03218 1.19926 0.78479 0.85673 0.83792 1.90696 1.58338 1.20471 1.74371 1.23417 1.02517 1.02229 0.98005 1.87272 1.57222 1.29770 1.30830 1.20820 0.98266 0.95542 0.91475 1.20951 1.26403 1.01684 1.08592 0.92468 1.25844 0.98265 0.96011 0.98214 1.70035 1.44753 1.15241 1.26048 0.85317 0.78642 0.78751 0.77599 1.19451 1.19745 1.19301 0.89975 0.91987 0.89691 0.82339 0.82975 0.84049 0.84999 0.90940 0.87534 0.89821 0.86286 0.85684 0.96224 0.96019 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.85 71.98 0.64 -1.19 16 2 C 0.17 3.25 2.95 44.25 0.13 3.38 16 3 H 0.09 2.07 6.66 -2.39 -0.02 2.06 16 4 C -0.10 -1.66 4.98 -19.86 -0.10 -1.76 16 5 C -0.09 -1.25 8.00 22.26 0.18 -1.07 16 6 C -0.11 -1.57 9.83 22.29 0.22 -1.35 16 7 C -0.05 -0.75 6.32 22.32 0.14 -0.61 16 8 Cl -0.07 -1.19 28.96 -2.72 -0.08 -1.27 16 9 C -0.12 -2.03 9.83 22.29 0.22 -1.82 16 10 C -0.10 -1.95 9.67 22.27 0.22 -1.73 16 11 N -0.60 -12.56 2.75 -826.79 -2.28 -14.83 16 12 C 0.05 0.67 8.27 127.77 1.06 1.73 16 13 C 0.53 16.68 7.69 87.66 0.67 17.36 16 14 O -0.56 -22.51 15.20 -3.03 -0.05 -22.56 16 15 C -0.11 -3.59 4.92 71.24 0.35 -3.24 16 16 S -0.28 -12.83 20.79 -56.49 -1.17 -14.01 16 17 C 0.09 4.59 5.70 71.24 0.41 5.00 16 18 C -0.54 -31.23 9.13 25.60 0.23 -30.99 16 19 H 0.06 3.37 7.71 -2.91 -0.02 3.35 16 20 C 0.02 1.00 5.46 84.65 0.46 1.46 16 21 N -0.92 -53.64 13.29 21.45 0.28 -53.36 16 22 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.65 5.86 -2.39 -0.01 0.63 16 29 H 0.16 1.22 5.15 -2.91 -0.01 1.21 16 30 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.13 2.41 7.95 -2.91 -0.02 2.38 16 33 H 0.07 0.78 7.10 -2.39 -0.02 0.76 16 34 H 0.11 0.66 5.58 -2.38 -0.01 0.65 16 35 H 0.08 1.02 6.31 -2.39 -0.02 1.01 16 36 H 0.12 3.43 8.10 -2.39 -0.02 3.41 16 37 H 0.13 3.46 7.42 -2.39 -0.02 3.44 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -72.56 358.27 4.61 -67.95 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.05 Total: 6.80 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.82 Total: -14.84 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -1.99 Total: -68.19 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -12.83 SS G_CDS: -1.17 Total: -14.01 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -72.56 4.61 -67.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.649 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds