Wall clock time and date at job start Sat Apr 11 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21275 * 120.00678 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99690 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47286 * 40.00153 * 7 5 4 9 9 C 1.52996 * 109.47282 * 280.00188 * 7 5 4 10 10 S 1.81395 * 109.47282 * 159.99983 * 7 5 4 11 11 C 1.81401 * 103.00357 * 185.00096 * 10 7 5 12 12 C 1.50703 * 109.47226 * 180.02562 * 11 10 7 13 13 H 1.07996 * 120.00098 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99896 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99848 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99954 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46903 * 90.00000 * 16 14 12 18 18 H 1.48498 * 109.46890 * 210.00077 * 16 14 12 19 19 H 1.48497 * 109.47104 * 330.00058 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 C 1.38245 * 119.98536 * 79.72811 * 20 2 1 22 22 C 1.38216 * 120.01040 * 179.72721 * 21 20 2 23 23 C 1.38351 * 119.98750 * 0.54997 * 22 21 20 24 24 Cl 1.73602 * 120.01592 * 179.75043 * 23 22 21 25 25 C 1.38358 * 119.97336 * 359.71779 * 23 22 21 26 26 C 1.38213 * 119.98462 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 31 31 H 1.09004 * 109.47120 * 179.97438 * 9 7 5 32 32 H 1.09001 * 109.47436 * 299.99604 * 9 7 5 33 33 H 1.09002 * 109.47148 * 60.00256 * 9 7 5 34 34 H 1.09002 * 109.47016 * 300.00406 * 11 10 7 35 35 H 1.08998 * 109.47141 * 60.00249 * 11 10 7 36 36 H 0.96993 * 119.99857 * 180.02562 * 15 14 12 37 37 H 1.07999 * 119.99221 * 0.02562 * 21 20 2 38 38 H 1.07998 * 120.00565 * 180.26940 * 22 21 20 39 39 H 1.08002 * 120.00777 * 179.97438 * 25 23 22 40 40 H 1.08001 * 119.99122 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8592 1.1585 -2.4115 7 6 2.6501 -0.7285 -3.5873 8 1 2.2159 -1.7273 -3.6334 9 6 4.1749 -0.8378 -3.5257 10 16 2.1703 0.2080 -5.0649 11 6 2.7186 -0.8627 -6.4227 12 6 2.3861 -0.2124 -7.7409 13 1 1.8945 0.7490 -7.7600 14 6 2.7096 -0.8448 -8.9226 15 7 2.4199 -0.2771 -10.0730 16 14 3.5606 -2.5074 -8.8896 17 1 2.5398 -3.5858 -8.8806 18 1 4.4188 -2.6481 -10.0933 19 1 4.3997 -2.6098 -7.6687 20 6 2.0323 -0.7104 1.2305 21 6 2.0613 -2.0921 1.2672 22 6 2.5272 -2.7441 2.3933 23 6 2.9539 -2.0139 3.4883 24 17 3.5331 -2.8322 4.9055 25 6 2.9194 -0.6312 3.4530 26 6 2.4583 0.0197 2.3243 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.2491 -1.6318 -1.1525 31 1 4.5387 -1.3519 -4.4154 32 1 4.6092 0.1609 -3.4798 33 1 4.4633 -1.4006 -2.6379 34 1 3.7960 -1.0137 -6.3539 35 1 2.2118 -1.8252 -6.3539 36 1 2.6471 -0.7222 -10.9043 37 1 1.7244 -2.6620 0.4139 38 1 2.5538 -3.8234 2.4203 39 1 3.2520 -0.0607 4.3076 40 1 2.4318 1.0990 2.2966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:08 Heat of formation + Delta-G solvation = -28.798165 kcal Electronic energy + Delta-G solvation = -22076.038469 eV Core-core repulsion = 18621.442231 eV Total energy + Delta-G solvation = -3454.596237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49358 -39.30361 -37.06332 -35.55928 -33.39451 -33.00205 -31.70813 -31.27516 -29.42081 -29.23676 -25.04891 -23.90415 -23.40125 -22.62597 -21.29743 -20.32886 -18.08112 -17.13302 -16.92159 -16.66213 -15.83575 -15.59562 -15.14843 -14.95969 -14.36581 -14.20009 -14.12338 -14.00745 -13.77969 -13.62999 -13.31695 -12.92803 -12.75361 -12.48704 -12.33772 -12.22032 -12.02084 -11.85474 -11.71830 -11.61937 -11.37095 -11.23785 -10.84377 -10.40486 -10.13663 -9.74596 -9.63108 -9.55828 -9.32797 -9.04709 -8.87929 -8.72548 -6.79796 -6.18660 -4.20799 0.58668 0.77507 1.66416 2.14932 2.70005 3.01676 3.18817 3.21718 3.25940 3.26745 3.63192 4.12233 4.25099 4.29087 4.37445 4.71813 4.77183 4.81931 4.97842 5.02978 5.08236 5.12083 5.17430 5.19692 5.40223 5.40691 5.58893 5.60473 5.68807 5.71902 5.82444 5.93206 5.99318 6.18315 6.25525 6.32244 6.54587 6.67718 7.31831 7.41970 8.19188 8.29709 8.84977 9.36626 10.93480 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.002229 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.472437 B =12558.454443 C =13322.539381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 H 0.100 0.900 4 N -0.729 5.729 5 C 0.541 3.459 6 O -0.511 6.511 7 C -0.108 4.108 8 H 0.098 0.902 9 C -0.139 4.139 10 S -0.195 6.195 11 C 0.032 3.968 12 C -0.512 4.512 13 H 0.084 0.916 14 C 0.079 3.921 15 N -0.890 5.890 16 Si 0.879 3.121 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.266 1.266 20 C -0.083 4.083 21 C -0.102 4.102 22 C -0.106 4.106 23 C -0.036 4.036 24 Cl -0.072 7.072 25 C -0.106 4.106 26 C -0.094 4.094 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.398 0.602 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.268 0.732 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -6.506 29.939 30.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.079 3.921 3 H 0.118 0.882 4 N -0.384 5.384 5 C 0.326 3.674 6 O -0.384 6.384 7 C -0.239 4.239 8 H 0.116 0.884 9 C -0.198 4.198 10 S 0.032 5.968 11 C -0.116 4.116 12 C -0.551 4.551 13 H 0.102 0.898 14 C -0.125 4.125 15 N -0.528 5.528 16 Si 0.705 3.295 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.083 4.083 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.063 4.063 24 Cl -0.043 7.043 25 C -0.125 4.125 26 C -0.113 4.113 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.470 -4.729 29.758 30.135 hybrid contribution 1.199 -2.802 0.102 3.050 sum 1.670 -7.531 29.860 30.840 Atomic orbital electron populations 1.22187 0.93769 1.02652 1.03195 1.19781 0.94493 0.96861 0.80966 0.88205 1.46097 1.69031 1.14018 1.09221 1.19918 0.76842 0.87166 0.83463 1.90729 1.47921 1.15505 1.84286 1.23277 1.00527 1.03158 0.96972 0.88385 1.21970 0.91698 1.03611 1.02500 1.87362 1.80148 1.32841 0.96449 1.21553 0.98568 0.96132 0.95311 1.20438 1.40685 1.07362 0.86647 0.89788 1.24867 0.95072 0.97608 0.94987 1.69866 1.46749 1.38756 0.97427 0.86798 0.80134 0.84460 0.78064 1.19947 1.20819 1.19103 1.20100 0.98566 0.93930 0.95740 1.20927 0.99330 0.93801 0.97967 1.21052 0.98839 1.00551 0.91981 1.20984 1.02754 0.92939 0.89604 1.98383 1.87321 1.79203 1.39369 1.21071 0.99974 0.92269 0.99171 1.21013 0.97679 1.00516 0.92098 0.92180 0.91423 0.90976 0.76656 0.90889 0.90841 0.92445 0.94579 0.95332 0.92221 0.85012 0.84700 0.84674 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.46 37.16 0.35 -1.07 16 2 C 0.18 1.69 2.77 -69.08 -0.19 1.49 16 3 H 0.10 1.05 7.44 -51.93 -0.39 0.66 16 4 N -0.73 -7.50 5.03 -54.93 -0.28 -7.78 16 5 C 0.54 7.98 6.97 -10.99 -0.08 7.91 16 6 O -0.51 -9.52 15.71 5.56 0.09 -9.43 16 7 C -0.11 -1.67 3.18 -27.88 -0.09 -1.76 16 8 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 9 C -0.14 -1.89 9.08 37.16 0.34 -1.55 16 10 S -0.20 -4.21 20.32 -107.50 -2.18 -6.40 16 11 C 0.03 0.77 4.46 36.01 0.16 0.93 16 12 C -0.51 -14.60 9.68 -34.44 -0.33 -14.93 16 13 H 0.08 2.65 7.96 -52.49 -0.42 2.23 16 14 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 15 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 16 Si 0.88 20.66 27.47 -169.99 -4.67 16.00 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 20 C -0.08 -0.62 4.95 -104.62 -0.52 -1.14 16 21 C -0.10 -0.68 9.05 -39.59 -0.36 -1.04 16 22 C -0.11 -0.71 9.83 -39.55 -0.39 -1.10 16 23 C -0.04 -0.27 6.32 -39.50 -0.25 -0.52 16 24 Cl -0.07 -0.52 28.96 -51.86 -1.50 -2.02 16 25 C -0.11 -0.72 9.83 -39.55 -0.39 -1.11 16 26 C -0.09 -0.65 9.67 -39.59 -0.38 -1.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.40 3.09 6.88 -40.82 -0.28 2.80 16 31 H 0.07 1.05 6.92 -51.93 -0.36 0.69 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.83 6.20 -51.92 -0.32 0.51 16 35 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.13 0.68 6.93 -52.49 -0.36 0.31 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 0.74 8.04 -52.49 -0.42 0.32 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -32.87 364.13 -10.00 -42.87 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.49 Total: 0.15 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.22 Total: -12.77 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.50 Total: -33.88 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.18 Total: -6.40 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.87 -10.00 -42.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.068 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds