Wall clock time and date at job start Sat Apr 11 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21275 * 120.00678 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99690 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47286 * 40.00153 * 7 5 4 9 9 C 1.52996 * 109.47282 * 280.00188 * 7 5 4 10 10 S 1.81395 * 109.47282 * 159.99983 * 7 5 4 11 11 C 1.81401 * 103.00357 * 185.00096 * 10 7 5 12 12 C 1.50703 * 109.47226 * 180.02562 * 11 10 7 13 13 H 1.07996 * 120.00098 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99896 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99848 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99954 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46903 * 90.00000 * 16 14 12 18 18 H 1.48498 * 109.46890 * 210.00077 * 16 14 12 19 19 H 1.48497 * 109.47104 * 330.00058 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 C 1.38245 * 119.98536 * 79.72811 * 20 2 1 22 22 C 1.38216 * 120.01040 * 179.72721 * 21 20 2 23 23 C 1.38351 * 119.98750 * 0.54997 * 22 21 20 24 24 Cl 1.73602 * 120.01592 * 179.75043 * 23 22 21 25 25 C 1.38358 * 119.97336 * 359.71779 * 23 22 21 26 26 C 1.38213 * 119.98462 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 31 31 H 1.09004 * 109.47120 * 179.97438 * 9 7 5 32 32 H 1.09001 * 109.47436 * 299.99604 * 9 7 5 33 33 H 1.09002 * 109.47148 * 60.00256 * 9 7 5 34 34 H 1.09002 * 109.47016 * 300.00406 * 11 10 7 35 35 H 1.08998 * 109.47141 * 60.00249 * 11 10 7 36 36 H 0.96993 * 119.99857 * 180.02562 * 15 14 12 37 37 H 1.07999 * 119.99221 * 0.02562 * 21 20 2 38 38 H 1.07998 * 120.00565 * 180.26940 * 22 21 20 39 39 H 1.08002 * 120.00777 * 179.97438 * 25 23 22 40 40 H 1.08001 * 119.99122 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8592 1.1585 -2.4115 7 6 2.6501 -0.7285 -3.5873 8 1 2.2159 -1.7273 -3.6334 9 6 4.1749 -0.8378 -3.5257 10 16 2.1703 0.2080 -5.0649 11 6 2.7186 -0.8627 -6.4227 12 6 2.3861 -0.2124 -7.7409 13 1 1.8945 0.7490 -7.7600 14 6 2.7096 -0.8448 -8.9226 15 7 2.4199 -0.2771 -10.0730 16 14 3.5606 -2.5074 -8.8896 17 1 2.5398 -3.5858 -8.8806 18 1 4.4188 -2.6481 -10.0933 19 1 4.3997 -2.6098 -7.6687 20 6 2.0323 -0.7104 1.2305 21 6 2.0613 -2.0921 1.2672 22 6 2.5272 -2.7441 2.3933 23 6 2.9539 -2.0139 3.4883 24 17 3.5331 -2.8322 4.9055 25 6 2.9194 -0.6312 3.4530 26 6 2.4583 0.0197 2.3243 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.2491 -1.6318 -1.1525 31 1 4.5387 -1.3519 -4.4154 32 1 4.6092 0.1609 -3.4798 33 1 4.4633 -1.4006 -2.6379 34 1 3.7960 -1.0137 -6.3539 35 1 2.2118 -1.8252 -6.3539 36 1 2.6471 -0.7222 -10.9043 37 1 1.7244 -2.6620 0.4139 38 1 2.5538 -3.8234 2.4203 39 1 3.2520 -0.0607 4.3076 40 1 2.4318 1.0990 2.2966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:07 Heat of formation + Delta-G solvation = -48.502360 kcal Electronic energy + Delta-G solvation = -22076.892907 eV Core-core repulsion = 18621.442231 eV Total energy + Delta-G solvation = -3455.450675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32143 -40.14171 -37.65139 -36.39796 -35.20983 -34.49132 -32.35830 -31.96103 -31.35561 -29.99937 -26.05128 -24.75511 -24.58864 -23.95794 -22.05973 -21.32440 -19.22781 -18.72143 -17.98913 -17.68840 -16.91434 -16.46763 -16.17480 -16.08975 -15.72893 -15.34158 -15.14467 -14.89712 -14.74397 -14.48465 -14.46627 -14.29243 -14.03236 -13.73551 -13.37514 -13.23538 -12.94410 -12.84724 -12.60898 -12.54571 -12.29527 -12.11154 -12.06453 -11.96835 -11.77028 -11.70325 -10.96453 -10.86831 -10.53338 -10.27521 -10.04204 -9.62329 -8.52155 -8.35354 -6.45678 0.04193 0.28838 0.68904 1.14465 1.35411 1.38702 1.49069 1.54752 1.94412 2.09759 2.31556 2.60864 2.97434 3.47528 3.67004 3.76466 3.88903 3.92222 4.03540 4.18812 4.22833 4.35703 4.45957 4.58937 4.64255 4.65677 4.69933 4.71347 4.80576 4.88311 4.96863 5.13276 5.13960 5.22652 5.23877 5.29456 5.36864 5.54978 5.75506 6.08861 6.40203 6.58734 7.13656 7.16370 8.80912 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.002229 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.472437 B =12558.454443 C =13322.539381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.187 3.813 3 H 0.084 0.916 4 N -0.706 5.706 5 C 0.542 3.458 6 O -0.558 6.558 7 C -0.089 4.089 8 H 0.129 0.871 9 C -0.136 4.136 10 S -0.264 6.264 11 C 0.046 3.954 12 C -0.531 4.531 13 H 0.029 0.971 14 C 0.015 3.985 15 N -0.943 5.943 16 Si 0.958 3.042 17 H -0.260 1.260 18 H -0.280 1.280 19 H -0.238 1.238 20 C -0.088 4.088 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.046 4.046 24 Cl -0.074 7.074 25 C -0.111 4.111 26 C -0.098 4.098 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.415 0.585 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.272 0.728 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -9.814 32.446 33.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.082 3.918 3 H 0.102 0.898 4 N -0.360 5.360 5 C 0.327 3.673 6 O -0.435 6.435 7 C -0.221 4.221 8 H 0.147 0.853 9 C -0.195 4.195 10 S -0.037 6.037 11 C -0.102 4.102 12 C -0.569 4.569 13 H 0.048 0.952 14 C -0.185 4.185 15 N -0.582 5.582 16 Si 0.779 3.221 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.161 1.161 20 C -0.089 4.089 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.072 4.072 24 Cl -0.046 7.046 25 C -0.129 4.129 26 C -0.117 4.117 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.253 0.747 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.682 -8.066 32.310 33.344 hybrid contribution 0.763 -1.688 -0.545 1.931 sum 2.445 -9.754 31.765 33.319 Atomic orbital electron populations 1.22145 0.93482 1.03273 1.02513 1.19766 0.94657 0.96291 0.81049 0.89787 1.45899 1.67334 1.14627 1.08178 1.19818 0.76581 0.86564 0.84297 1.90725 1.50251 1.17543 1.85019 1.23320 1.02221 1.03107 0.93447 0.85301 1.21958 0.89728 1.03425 1.04363 1.87584 1.80968 1.35096 1.00040 1.21282 0.99214 0.96239 0.93484 1.20659 1.40606 1.05894 0.89784 0.95222 1.25994 0.95682 1.02700 0.94087 1.70039 1.48369 1.41247 0.98502 0.85556 0.79272 0.78016 0.79225 1.18472 1.20536 1.16097 1.19935 0.99583 0.94348 0.95013 1.21103 0.98798 0.93395 0.98562 1.21251 0.98414 1.01378 0.91673 1.21176 1.02946 0.93289 0.89806 1.98384 1.87365 1.79236 1.39578 1.21234 0.99823 0.92339 0.99540 1.21167 0.97358 1.01182 0.91981 0.90852 0.89990 0.93802 0.74682 0.91228 0.92412 0.88104 0.93337 0.93699 0.91881 0.83204 0.83254 0.83516 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.46 71.98 0.68 -1.86 16 2 C 0.19 3.08 2.77 44.25 0.12 3.21 16 3 H 0.08 1.71 7.44 -2.39 -0.02 1.69 16 4 N -0.71 -12.64 5.03 -446.09 -2.24 -14.89 16 5 C 0.54 15.19 6.97 87.66 0.61 15.80 16 6 O -0.56 -20.99 15.71 -3.01 -0.05 -21.03 16 7 C -0.09 -2.56 3.18 29.85 0.09 -2.46 16 8 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 9 C -0.14 -3.27 9.08 71.98 0.65 -2.62 16 10 S -0.26 -11.50 20.32 -56.49 -1.15 -12.65 16 11 C 0.05 2.14 4.46 71.24 0.32 2.46 16 12 C -0.53 -31.23 9.68 25.60 0.25 -30.98 16 13 H 0.03 2.00 7.96 -2.91 -0.02 1.98 16 14 C 0.01 0.86 5.47 84.66 0.46 1.32 16 15 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 16 Si 0.96 41.71 27.47 68.60 1.88 43.59 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 20 C -0.09 -1.10 4.95 -19.86 -0.10 -1.19 16 21 C -0.10 -1.00 9.05 22.27 0.20 -0.80 16 22 C -0.11 -1.13 9.83 22.29 0.22 -0.91 16 23 C -0.05 -0.56 6.32 22.33 0.14 -0.42 16 24 Cl -0.07 -0.94 28.96 -2.72 -0.08 -1.02 16 25 C -0.11 -1.27 9.83 22.29 0.22 -1.05 16 26 C -0.10 -1.15 9.67 22.26 0.22 -0.94 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.41 4.68 6.88 -92.71 -0.64 4.04 16 31 H 0.07 1.75 6.92 -2.38 -0.02 1.74 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 2.13 6.20 -2.39 -0.01 2.11 16 35 H 0.04 1.94 7.57 -2.39 -0.02 1.92 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.15 0.88 6.93 -2.91 -0.02 0.86 16 38 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.15 1.35 8.04 -2.91 -0.02 1.32 16 Total: -1.00 -76.00 364.13 3.12 -72.88 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.36 Total: 11.99 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 4.09 Total: -20.44 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.94 Total: -73.32 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.59 kcal Atomic # 16 Polarization: -11.50 SS G_CDS: -1.15 Total: -12.65 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -76.00 3.12 -72.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.382 kcal (2) G-P(sol) polarization free energy of solvation -76.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds