Wall clock time and date at job start Sat Apr 11 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47253 * 2 1 4 4 C 1.34706 * 117.00201 * 180.02562 * 3 2 1 5 5 O 1.21471 * 119.99909 * 359.97438 * 4 3 2 6 6 C 1.47723 * 120.00447 * 179.97438 * 4 3 2 7 7 C 1.39653 * 120.14713 * 357.01437 * 6 4 3 8 8 C 1.37916 * 119.84771 * 180.02562 * 7 6 4 9 9 C 1.38392 * 120.15326 * 359.97438 * 8 7 6 10 10 C 1.38347 * 120.29975 * 0.02562 * 9 8 7 11 11 C 1.37966 * 120.15119 * 0.27155 * 10 9 8 12 12 S 1.76200 * 120.07724 * 179.72366 * 11 10 9 13 13 O 1.42094 * 106.39983 * 100.82050 * 12 11 10 14 14 O 1.42094 * 106.39997 * 233.74427 * 12 11 10 15 15 N 1.65600 * 107.21569 * 347.28101 * 12 11 10 16 16 C 1.36939 * 120.00462 * 275.09065 * 15 12 11 17 17 H 1.08007 * 119.99484 * 7.72173 * 16 15 12 18 18 C 1.38807 * 120.00233 * 187.72619 * 16 15 12 19 19 N 1.31618 * 120.00181 * 7.42890 * 18 16 15 20 20 Si 1.86801 * 119.99814 * 187.42750 * 18 16 15 21 21 H 1.48501 * 109.47298 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47003 * 119.99996 * 20 18 16 23 23 H 1.48499 * 109.47443 * 239.99967 * 20 18 16 24 24 C 1.46504 * 120.00120 * 95.08844 * 15 12 11 25 25 C 1.53005 * 109.46546 * 93.35712 * 24 15 12 26 26 H 1.09004 * 109.47400 * 300.00256 * 1 2 3 27 27 H 1.09003 * 109.47127 * 60.00330 * 1 2 3 28 28 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47143 * 239.99342 * 2 1 3 30 30 H 1.09003 * 109.47127 * 119.99670 * 2 1 3 31 31 H 1.08001 * 120.07368 * 359.97433 * 7 6 4 32 32 H 1.08006 * 119.92527 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.85136 * 180.02562 * 9 8 7 34 34 H 1.08002 * 119.91888 * 180.02562 * 10 9 8 35 35 H 0.96995 * 119.99911 * 180.02562 * 19 18 16 36 36 H 1.08992 * 109.47523 * 213.35342 * 24 15 12 37 37 H 1.08998 * 109.46927 * 333.36329 * 24 15 12 38 38 H 1.09004 * 109.47184 * 180.02562 * 25 24 15 39 39 H 1.09000 * 109.47335 * 299.99592 * 25 24 15 40 40 H 1.08991 * 109.47231 * 60.00358 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0005 6 6 3.9142 2.9105 -0.0011 7 6 3.0679 4.0196 -0.0641 8 6 3.6018 5.2912 -0.0648 9 6 4.9728 5.4696 -0.0028 10 6 5.8169 4.3753 0.0597 11 6 5.2965 3.0975 0.0550 12 16 6.3738 1.7051 0.1273 13 8 6.3539 1.2520 1.4740 14 8 6.0340 0.8772 -0.9764 15 7 7.9087 2.2575 -0.1576 16 6 8.3551 2.4067 -1.4436 17 1 7.6707 2.2850 -2.2702 18 6 9.6870 2.7143 -1.6847 19 7 10.5515 2.7189 -0.6922 20 14 10.2525 3.1219 -3.4178 21 1 9.0957 3.0485 -4.3461 22 1 10.8208 4.4936 -3.4433 23 1 11.2904 2.1481 -3.8417 24 6 8.7892 2.5867 0.9661 25 6 9.6465 1.3687 1.3159 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9978 3.8818 -0.1129 32 1 2.9484 6.1499 -0.1138 33 1 5.3856 6.4675 -0.0033 34 1 6.8859 4.5216 0.1083 35 1 11.4821 2.9342 -0.8607 36 1 9.4362 3.4189 0.6891 37 1 8.1864 2.8669 1.8300 38 1 10.3013 1.6133 2.1523 39 1 8.9995 0.5364 1.5930 40 1 10.2492 1.0884 0.4521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442974483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:13 Heat of formation + Delta-G solvation = -98.531209 kcal Electronic energy + Delta-G solvation = -27096.064593 eV Core-core repulsion = 23197.735339 eV Total energy + Delta-G solvation = -3898.329254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.53424 -38.63334 -36.68372 -36.06722 -35.85415 -34.43952 -32.16160 -31.33631 -31.12553 -30.88997 -29.18435 -24.92091 -24.37614 -22.98644 -22.72553 -21.56958 -20.98307 -18.62677 -18.25503 -17.46030 -16.68265 -16.54632 -16.33809 -16.19208 -14.88548 -14.84025 -14.53608 -14.25655 -14.17768 -14.10560 -13.41668 -13.29806 -12.91063 -12.71393 -12.61252 -12.30049 -12.13328 -11.97751 -11.67703 -11.59675 -11.43626 -11.08808 -10.97141 -10.85530 -10.79729 -10.64690 -10.53380 -10.25364 -10.16838 -9.93562 -9.87316 -9.65819 -9.18792 -8.98916 -8.95680 -7.93154 -6.06535 -3.79833 0.60034 1.22348 1.55077 2.58893 2.62865 3.21185 3.29673 3.34275 3.71372 4.10356 4.43536 4.56165 4.75780 4.86010 4.88693 4.89212 4.99635 5.16067 5.18593 5.25333 5.43247 5.59593 5.66235 5.66836 5.79914 5.87086 5.96267 6.10366 6.23290 6.31210 6.35719 6.43420 6.71435 6.84569 6.92154 7.05635 7.25863 7.48158 7.76469 7.83926 8.02129 8.56643 8.96775 9.35013 10.80214 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.004763 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.985937 B = 5876.998269 C = 6308.192011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.351 6.351 4 C 0.489 3.511 5 O -0.468 6.468 6 C -0.045 4.045 7 C -0.085 4.085 8 C -0.102 4.102 9 C -0.105 4.105 10 C -0.036 4.036 11 C -0.608 4.608 12 S 2.656 3.344 13 O -0.975 6.975 14 O -0.945 6.945 15 N -0.848 5.848 16 C -0.296 4.296 17 H 0.105 0.895 18 C 0.033 3.967 19 N -0.875 5.875 20 Si 0.918 3.082 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.137 3.863 25 C -0.140 4.140 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.262 0.738 36 H 0.113 0.887 37 H 0.026 0.974 38 H 0.034 0.966 39 H 0.019 0.981 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 4.926 1.888 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.269 6.269 4 C 0.332 3.668 5 O -0.354 6.354 6 C -0.047 4.047 7 C -0.104 4.104 8 C -0.120 4.120 9 C -0.123 4.123 10 C -0.055 4.055 11 C -0.685 4.685 12 S 2.740 3.260 13 O -0.965 6.965 14 O -0.934 6.934 15 N -0.682 5.682 16 C -0.428 4.428 17 H 0.123 0.877 18 C -0.170 4.170 19 N -0.518 5.518 20 Si 0.745 3.255 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.012 3.988 25 C -0.199 4.199 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.777 3.829 2.096 14.452 hybrid contribution 0.124 0.905 -0.939 1.310 sum -13.654 4.734 1.156 14.497 Atomic orbital electron populations 1.21804 0.92534 1.02996 1.03399 1.23128 0.95182 0.79883 1.03407 1.86464 1.23106 1.32708 1.84599 1.21389 0.81267 0.90071 0.74102 1.90994 1.59012 1.42130 1.43297 1.18547 0.92213 0.90260 1.03655 1.21468 0.99991 0.91814 0.97137 1.21291 0.95533 0.96888 0.98264 1.21582 0.93685 0.99470 0.97611 1.21085 1.01315 0.90250 0.92836 1.32547 1.08373 1.20862 1.06738 1.04131 0.72152 0.75842 0.73841 1.93459 1.87023 1.79254 1.36767 1.93486 1.83035 1.63122 1.53756 1.53652 1.23156 1.79630 1.11767 1.19465 0.95211 1.46042 0.82084 0.87750 1.25083 0.95476 0.97660 0.98771 1.70200 1.03254 1.48566 1.29735 0.86005 0.78941 0.77997 0.82585 1.19496 1.20836 1.20776 1.21274 0.92115 1.01081 0.84337 1.22186 0.99246 0.97004 1.01501 0.91514 0.91484 0.90122 0.90613 0.90772 0.84221 0.84914 0.84781 0.83118 0.92677 0.86910 0.95530 0.94747 0.96220 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.35 -5.48 9.48 -40.51 -0.38 -5.87 16 4 C 0.49 9.65 7.84 34.61 0.27 9.93 16 5 O -0.47 -11.00 11.49 -29.29 -0.34 -11.33 16 6 C -0.04 -0.84 5.87 -104.98 -0.62 -1.46 16 7 C -0.09 -1.22 9.62 -39.17 -0.38 -1.60 16 8 C -0.10 -1.25 10.03 -39.64 -0.40 -1.65 16 9 C -0.10 -1.43 10.04 -39.48 -0.40 -1.83 16 10 C -0.04 -0.64 9.56 -39.64 -0.38 -1.02 16 11 C -0.61 -12.65 5.86 -39.17 -0.23 -12.88 16 12 S 2.66 66.35 3.97 -107.50 -0.43 65.92 16 13 O -0.98 -25.85 16.54 -63.32 -1.05 -26.90 16 14 O -0.94 -26.07 14.31 -67.26 -0.96 -27.04 16 15 N -0.85 -21.12 1.91 -59.91 -0.11 -21.24 16 16 C -0.30 -7.62 9.46 -15.06 -0.14 -7.77 16 17 H 0.10 2.71 7.45 -52.48 -0.39 2.32 16 18 C 0.03 0.83 5.32 -17.43 -0.09 0.74 16 19 N -0.87 -21.79 7.32 55.49 0.41 -21.38 16 20 Si 0.92 19.77 29.56 -169.99 -5.02 14.75 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 24 C 0.14 3.23 5.13 -4.04 -0.02 3.21 16 25 C -0.14 -3.32 9.54 37.16 0.35 -2.96 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.14 1.59 7.62 -52.49 -0.40 1.19 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.15 2.64 7.13 -52.49 -0.37 2.27 16 35 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 36 H 0.11 2.69 5.85 -51.93 -0.30 2.38 16 37 H 0.03 0.58 7.53 -51.93 -0.39 0.19 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -32.95 343.67 -9.24 -42.18 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.11 Total: 2.94 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.41 Total: -17.22 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.29 Total: -42.62 kcal Atomic # 8 Polarization: -68.40 SS G_CDS: -2.73 Total: -71.13 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 66.35 SS G_CDS: -0.43 Total: 65.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.95 -9.24 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442974483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.346 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds