Wall clock time and date at job start Sat Apr 11 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36906 * 120.00570 * 2 1 4 4 H 1.07999 * 120.00132 * 204.30631 * 3 2 1 5 5 C 1.39014 * 119.99902 * 24.30383 * 3 2 1 6 6 N 1.31384 * 120.00175 * 12.90431 * 5 3 2 7 7 Si 1.86805 * 120.00207 * 192.89945 * 5 3 2 8 8 H 1.48503 * 109.46539 * 60.00539 * 7 5 3 9 9 H 1.48502 * 109.47037 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47125 * 300.00509 * 7 5 3 11 11 C 1.34783 * 119.99782 * 180.02562 * 2 1 3 12 12 O 1.21613 * 120.00421 * 179.97438 * 11 2 1 13 13 C 1.47457 * 119.99901 * 359.97438 * 11 2 1 14 14 C 1.40039 * 120.15298 * 89.97866 * 13 11 2 15 15 F 1.35094 * 120.02346 * 0.02562 * 14 13 11 16 16 C 1.38149 * 119.94962 * 180.02562 * 14 13 11 17 17 C 1.38304 * 120.26754 * 0.02562 * 16 14 13 18 18 C 1.38898 * 120.31752 * 359.97438 * 17 16 14 19 19 S 1.76193 * 119.97770 * 180.27943 * 18 17 16 20 20 C 1.81404 * 103.00232 * 359.72810 * 19 18 17 21 21 C 1.53001 * 109.47320 * 179.97438 * 20 19 18 22 22 C 1.52997 * 117.49859 * 243.62446 * 21 20 19 23 23 C 1.52998 * 117.49732 * 175.00050 * 21 20 19 24 24 C 1.38898 * 120.04186 * 0.02562 * 18 17 16 25 25 F 1.35099 * 120.13079 * 180.02562 * 24 18 17 26 26 H 1.09004 * 109.47071 * 266.06905 * 1 2 3 27 27 H 1.09003 * 109.46783 * 26.06507 * 1 2 3 28 28 H 1.09002 * 109.47826 * 146.06938 * 1 2 3 29 29 H 0.97000 * 120.00519 * 180.02562 * 6 5 3 30 30 H 1.07993 * 119.86608 * 179.97438 * 16 14 13 31 31 H 1.08007 * 119.84352 * 180.02562 * 17 16 14 32 32 H 1.08999 * 109.46728 * 299.99821 * 20 19 18 33 33 H 1.09007 * 109.47104 * 59.99799 * 20 19 18 34 34 H 1.09000 * 115.54686 * 29.32906 * 21 20 19 35 35 H 1.08997 * 117.50315 * 359.97438 * 22 21 20 36 36 H 1.09005 * 117.49760 * 145.02825 * 22 21 20 37 37 H 1.09004 * 117.49659 * 214.98334 * 23 21 20 38 38 H 1.08994 * 117.50095 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.1578 1.2269 -0.3850 5 6 1.5470 2.3362 0.4955 6 7 0.4348 2.2486 1.1895 7 14 2.3186 4.0069 0.1748 8 1 2.3949 4.2440 -1.2892 9 1 1.4880 5.0648 0.8043 10 1 3.6857 4.0401 0.7536 11 6 2.1388 -1.1673 -0.0005 12 8 3.3549 -1.1674 -0.0010 13 6 1.4014 -2.4443 -0.0005 14 6 1.0488 -3.0529 -1.2114 15 9 1.3844 -2.4709 -2.3834 16 6 0.3576 -4.2490 -1.2065 17 6 0.0110 -4.8490 -0.0095 18 6 0.3551 -4.2550 1.1980 19 16 -0.0844 -5.0309 2.7176 20 6 -0.9534 -6.5280 2.1751 21 6 -1.4069 -7.3263 3.3990 22 6 -0.8068 -8.7199 3.5955 23 6 -2.2639 -8.5697 3.1535 24 6 1.0501 -3.0525 1.2082 25 9 1.3862 -2.4734 2.3817 26 1 -0.3633 -0.0705 1.0253 27 1 -0.3633 0.9232 -0.4516 28 1 -0.3635 -0.8526 -0.5736 29 1 0.0141 3.0514 1.5349 30 1 0.0860 -4.7170 -2.1411 31 1 -0.5291 -5.7843 -0.0137 32 1 -1.8231 -6.2480 1.5808 33 1 -0.2822 -7.1391 1.5714 34 1 -1.6175 -6.7381 4.2922 35 1 -0.0893 -9.0682 2.8527 36 1 -0.6226 -9.0489 4.6183 37 1 -3.0382 -8.7998 3.8854 38 1 -2.5050 -8.8188 2.1201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448837185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:20 Heat of formation + Delta-G solvation = -59.777909 kcal Electronic energy + Delta-G solvation = -25147.329256 eV Core-core repulsion = 21139.592956 eV Total energy + Delta-G solvation = -4007.736300 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.73717 -48.66817 -39.11891 -37.87088 -37.68245 -34.73333 -31.94617 -30.99186 -30.40405 -29.15133 -26.39665 -25.04815 -23.30108 -23.00329 -22.77802 -21.09938 -19.90126 -17.97113 -17.56413 -17.18923 -16.88257 -16.47197 -15.91508 -15.62374 -15.32576 -15.16417 -15.02725 -14.79023 -14.36293 -14.17411 -14.12396 -13.83880 -13.65316 -12.97895 -12.83602 -12.18328 -12.15161 -12.03702 -11.92060 -11.73355 -11.61198 -11.42373 -11.29560 -10.88503 -10.76737 -10.60653 -10.43348 -10.37321 -10.23608 -9.55613 -9.10223 -8.91595 -8.54808 -7.75618 -7.41497 -6.39500 -3.95273 0.84886 0.99561 1.22147 2.20402 3.15435 3.22774 3.24568 3.29176 3.37097 3.62485 3.92009 4.08903 4.17153 4.44248 4.45101 4.53864 4.56576 4.71342 4.81775 4.92284 5.06129 5.09451 5.11388 5.25082 5.33924 5.49469 5.60724 5.71029 5.76655 5.78646 5.84816 5.95730 6.05373 6.26843 6.70879 6.78811 7.12817 7.50861 8.02519 8.38614 9.06816 9.29156 9.83694 10.65056 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.003254 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.481270 B = 8603.886062 C = 9286.030490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.420 5.420 3 C -0.310 4.310 4 H 0.102 0.898 5 C 0.034 3.966 6 N -0.873 5.873 7 Si 0.931 3.069 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.478 3.522 12 O -0.572 6.572 13 C -0.134 4.134 14 C 0.146 3.854 15 F -0.121 7.121 16 C -0.149 4.149 17 C -0.081 4.081 18 C -0.143 4.143 19 S -0.075 6.075 20 C -0.085 4.085 21 C -0.142 4.142 22 C -0.174 4.174 23 C -0.169 4.169 24 C 0.176 3.824 25 F -0.108 7.108 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.022 0.978 29 H 0.271 0.729 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 -19.207 0.667 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.137 5.137 3 C -0.438 4.438 4 H 0.119 0.881 5 C -0.170 4.170 6 N -0.511 5.511 7 Si 0.757 3.243 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.196 1.196 11 C 0.264 3.736 12 O -0.456 6.456 13 C -0.141 4.141 14 C 0.123 3.877 15 F -0.099 7.099 16 C -0.170 4.170 17 C -0.105 4.105 18 C -0.257 4.257 19 S 0.169 5.831 20 C -0.233 4.233 21 C -0.161 4.161 22 C -0.211 4.211 23 C -0.208 4.208 24 C 0.150 3.850 25 F -0.086 7.086 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.484 -18.677 1.974 20.609 hybrid contribution 0.017 0.704 -1.392 1.560 sum -8.467 -17.973 0.582 19.876 Atomic orbital electron populations 1.21527 0.80901 0.99986 1.00945 1.43474 1.05651 1.04314 1.60218 1.19643 1.00903 0.83618 1.39602 0.88062 1.25427 0.96519 1.00359 0.94726 1.69986 1.18963 1.30104 1.32078 0.85920 0.79142 0.80376 0.78842 1.19703 1.20789 1.19556 1.17374 0.87235 0.82438 0.86577 1.90653 1.12668 1.86166 1.56143 1.20363 1.02503 1.00015 0.91257 1.17406 0.97514 0.92234 0.80498 1.91555 1.90086 1.83791 1.44454 1.20922 1.01566 0.94959 0.99519 1.20768 1.00070 0.99836 0.89816 1.21679 1.06592 0.98515 0.98894 1.85832 1.69377 1.22325 1.05598 1.23286 1.02635 0.97122 1.00301 1.21803 1.05503 0.90017 0.98794 1.23097 0.96299 0.98594 1.03064 1.23030 0.94334 1.00563 1.02853 1.16710 0.96698 0.90532 0.81076 1.91595 1.89621 1.83392 1.44003 0.92564 0.90168 0.95892 0.91874 0.83598 0.84192 0.88803 0.89164 0.86680 0.88433 0.88377 0.88303 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.62 8.46 59.84 0.51 3.13 16 2 N -0.42 -11.45 3.01 -123.42 -0.37 -11.82 16 3 C -0.31 -8.92 9.24 -15.00 -0.14 -9.05 16 4 H 0.10 3.02 7.44 -52.49 -0.39 2.63 16 5 C 0.03 0.92 5.04 -17.46 -0.09 0.83 16 6 N -0.87 -23.61 10.84 55.50 0.60 -23.01 16 7 Si 0.93 20.92 29.57 -169.99 -5.03 15.90 16 8 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 C 0.48 12.77 6.34 -12.50 -0.08 12.69 16 12 O -0.57 -17.25 16.82 5.27 0.09 -17.17 16 13 C -0.13 -2.89 3.98 -104.88 -0.42 -3.31 16 14 C 0.15 2.64 6.85 -38.94 -0.27 2.37 16 15 F -0.12 -2.32 16.82 2.25 0.04 -2.28 16 16 C -0.15 -1.96 10.00 -39.59 -0.40 -2.36 16 17 C -0.08 -0.98 9.35 -39.31 -0.37 -1.35 16 18 C -0.14 -2.18 6.11 -39.09 -0.24 -2.42 16 19 S -0.08 -0.97 21.46 -107.50 -2.31 -3.28 16 20 C -0.09 -0.71 4.61 37.16 0.17 -0.54 16 21 C -0.14 -1.06 5.75 -90.62 -0.52 -1.58 16 22 C -0.17 -1.11 10.18 -26.73 -0.27 -1.38 16 23 C -0.17 -0.98 10.25 -26.73 -0.27 -1.25 16 24 C 0.18 3.46 7.26 -38.75 -0.28 3.18 16 25 F -0.11 -2.38 16.31 2.25 0.04 -2.35 16 26 H 0.06 1.38 7.82 -51.93 -0.41 0.97 16 27 H 0.08 1.95 6.81 -51.93 -0.35 1.60 16 28 H 0.02 0.47 6.70 -51.93 -0.35 0.12 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 1.16 5.84 -52.48 -0.31 0.85 16 32 H 0.09 0.69 7.75 -51.92 -0.40 0.29 16 33 H 0.09 0.66 7.46 -51.92 -0.39 0.28 16 34 H 0.12 0.93 8.06 -51.93 -0.42 0.51 16 35 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -33.02 346.28 -8.64 -41.66 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.26 Total: -1.83 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.66 Total: -1.04 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.23 Total: -34.83 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.09 Total: -17.17 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.07 Total: -4.63 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.31 Total: -3.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.02 -8.64 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448837185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.119 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds