Wall clock time and date at job start Sat Apr 11 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47183 * 2 1 4 4 C 1.34709 * 116.99971 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00215 * 0.02562 * 4 3 2 6 6 C 1.47723 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.39633 * 120.15316 * 179.97438 * 6 4 3 8 8 C 1.37938 * 119.84852 * 180.30600 * 7 6 4 9 9 C 1.38372 * 120.14963 * 359.44003 * 8 7 6 10 10 C 1.50708 * 119.84796 * 180.28044 * 9 8 7 11 11 S 1.81398 * 109.47294 * 270.28026 * 10 9 8 12 12 O 1.42098 * 110.53826 * 291.62543 * 11 10 9 13 13 O 1.42096 * 110.54450 * 68.37554 * 11 10 9 14 14 N 1.65599 * 104.44798 * 179.97438 * 11 10 9 15 15 C 1.46505 * 119.99880 * 65.00200 * 14 11 10 16 16 C 1.50693 * 109.47126 * 164.99850 * 15 14 11 17 17 H 1.08007 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00311 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00423 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99721 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47073 * 89.99815 * 20 18 16 22 22 H 1.48500 * 109.47272 * 210.00022 * 20 18 16 23 23 H 1.48496 * 109.47311 * 330.00117 * 20 18 16 24 24 C 1.38363 * 120.30454 * 0.56443 * 9 8 7 25 25 C 1.37948 * 120.14806 * 359.71588 * 24 9 8 26 26 H 1.09003 * 109.47471 * 60.00245 * 1 2 3 27 27 H 1.09004 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47224 * 299.99983 * 1 2 3 29 29 H 1.09004 * 109.46780 * 239.99718 * 2 1 3 30 30 H 1.09004 * 109.47030 * 120.00059 * 2 1 3 31 31 H 1.08002 * 120.07109 * 0.02562 * 7 6 4 32 32 H 1.07998 * 119.92553 * 179.70097 * 8 7 6 33 33 H 1.09000 * 109.46665 * 30.28514 * 10 9 8 34 34 H 1.08996 * 109.46685 * 150.27641 * 10 9 8 35 35 H 0.96991 * 120.00209 * 244.99585 * 14 11 10 36 36 H 1.09006 * 109.47094 * 284.99620 * 15 14 11 37 37 H 1.08996 * 109.47451 * 44.99656 * 15 14 11 38 38 H 0.97004 * 120.00060 * 180.02562 * 19 18 16 39 39 H 1.07997 * 119.93022 * 179.74159 * 24 9 8 40 40 H 1.08004 * 120.07515 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0015 6 6 3.9141 2.9104 -0.0011 7 6 5.2979 3.0970 -0.0012 8 6 5.8184 4.3744 0.0047 9 6 4.9727 5.4695 -0.0012 10 6 5.5487 6.8622 -0.0012 11 16 5.7799 7.4209 1.7091 12 8 4.5236 7.6201 2.3426 13 8 6.8097 6.6745 2.3427 14 7 6.4111 8.9450 1.5640 15 6 5.6100 10.0158 0.9656 16 6 6.2401 11.3487 1.2773 17 1 7.1465 11.3938 1.8630 18 6 5.6597 12.5107 0.8148 19 7 6.2093 13.6739 1.0872 20 14 4.0925 12.4326 -0.1987 21 1 2.9152 12.4975 0.7042 22 1 4.0560 13.5782 -1.1429 23 1 4.0602 11.1599 -0.9632 24 6 3.6005 5.2920 -0.0011 25 6 3.0665 4.0200 -0.0011 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9591 2.2431 -0.0011 32 1 6.8885 4.5201 0.0095 33 1 6.5100 6.8577 -0.5151 34 1 4.8652 7.5380 -0.5150 35 1 7.3111 9.1289 1.8753 36 1 5.5679 9.8776 -0.1148 37 1 4.6004 9.9865 1.3753 38 1 5.8007 14.4915 0.7622 39 1 2.9460 6.1510 -0.0015 40 1 1.9952 3.8828 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451453528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:22 Heat of formation + Delta-G solvation = -138.178209 kcal Electronic energy + Delta-G solvation = -24694.049062 eV Core-core repulsion = 20794.000586 eV Total energy + Delta-G solvation = -3900.048477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90517 -39.33922 -36.91396 -36.81137 -35.65314 -34.86029 -33.56593 -32.28286 -32.06499 -31.33530 -28.31517 -27.45858 -24.38545 -23.07190 -22.79082 -22.13296 -21.08105 -19.12754 -18.39870 -17.77983 -17.37113 -16.90548 -16.52437 -16.31767 -16.03089 -15.51029 -15.26418 -14.81963 -14.59106 -14.54652 -13.88627 -13.69410 -13.62188 -13.25318 -13.13038 -13.01591 -12.75319 -12.56614 -12.35535 -12.19205 -12.10101 -12.01913 -11.82430 -11.69175 -11.38701 -11.11562 -10.96179 -10.92649 -10.84408 -10.67185 -10.05940 -9.60359 -9.35481 -9.23803 -8.90006 -8.56152 -6.25472 -4.27606 0.08609 0.68062 1.02304 2.19955 2.25061 3.12371 3.18346 3.23093 3.27174 3.41322 3.90116 4.18867 4.24161 4.25685 4.37048 4.51256 4.55513 4.56915 4.62596 4.84303 4.95005 4.98578 5.07493 5.17460 5.24931 5.28788 5.35003 5.51477 5.55640 5.68159 5.85229 5.92783 6.04194 6.08863 6.10516 6.45494 6.70469 6.80967 7.31495 7.39814 7.73727 8.30016 8.76327 9.31663 10.86878 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002576 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.785854 B =10866.085789 C =11628.749936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.353 6.353 4 C 0.513 3.487 5 O -0.507 6.507 6 C -0.129 4.129 7 C -0.050 4.050 8 C -0.120 4.120 9 C -0.045 4.045 10 C -0.605 4.605 11 S 2.608 3.392 12 O -0.950 6.950 13 O -0.964 6.964 14 N -1.096 6.096 15 C 0.212 3.788 16 C -0.533 4.533 17 H 0.083 0.917 18 C 0.074 3.926 19 N -0.890 5.890 20 Si 0.874 3.126 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.264 1.264 24 C -0.121 4.121 25 C -0.057 4.057 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.416 0.584 36 H 0.019 0.981 37 H 0.033 0.967 38 H 0.268 0.732 39 H 0.143 0.857 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 -23.499 -6.061 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.358 3.642 5 O -0.396 6.396 6 C -0.131 4.131 7 C -0.068 4.068 8 C -0.138 4.138 9 C -0.047 4.047 10 C -0.730 4.730 11 S 2.698 3.302 12 O -0.940 6.940 13 O -0.954 6.954 14 N -0.858 5.858 15 C 0.088 3.912 16 C -0.572 4.572 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.527 5.527 20 Si 0.701 3.299 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.189 1.189 24 C -0.140 4.140 25 C -0.075 4.075 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.252 0.748 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.426 -24.072 -5.368 26.063 hybrid contribution -0.316 0.292 -1.227 1.300 sum -8.742 -23.780 -6.595 26.181 Atomic orbital electron populations 1.21821 0.92375 1.03109 1.03744 1.23071 0.95494 0.79768 1.02771 1.86545 1.23680 1.32653 1.84140 1.21138 0.80648 0.89779 0.72607 1.90833 1.60414 1.42421 1.45928 1.19165 0.94171 0.90049 1.09682 1.21256 0.93291 0.97889 0.94408 1.21176 1.00824 0.91255 1.00574 1.19391 0.94027 0.92732 0.98529 1.29929 1.11391 1.02315 1.29352 1.05020 0.74747 0.73838 0.76575 1.93591 1.44920 1.84657 1.70837 1.93564 1.57415 1.72030 1.72407 1.55333 1.28337 1.24699 1.77445 1.19512 0.91710 0.87552 0.92461 1.21025 1.12518 0.87953 1.35676 0.89912 1.24883 0.97308 0.95164 0.95645 1.69872 1.39979 0.97691 1.45202 0.86883 0.84040 0.78317 0.80710 1.19543 1.20768 1.18873 1.21260 0.94357 0.98133 1.00221 1.21471 1.00547 0.91102 0.94383 0.91356 0.90100 0.91277 0.91091 0.91025 0.83878 0.83882 0.83465 0.83477 0.74844 0.96361 0.94909 0.92204 0.83904 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.38 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.35 -3.51 9.47 -40.52 -0.38 -3.89 16 4 C 0.51 5.97 7.90 34.61 0.27 6.24 16 5 O -0.51 -6.88 16.14 -19.24 -0.31 -7.19 16 6 C -0.13 -1.46 5.87 -104.98 -0.62 -2.07 16 7 C -0.05 -0.55 9.60 -39.17 -0.38 -0.93 16 8 C -0.12 -1.32 9.68 -39.64 -0.38 -1.71 16 9 C -0.05 -0.54 5.15 -104.52 -0.54 -1.08 16 10 C -0.61 -7.21 6.19 36.01 0.22 -6.99 16 11 S 2.61 42.49 5.44 -107.50 -0.58 41.91 16 12 O -0.95 -18.44 17.50 -57.54 -1.01 -19.44 16 13 O -0.96 -17.24 18.08 -57.54 -1.04 -18.28 16 14 N -1.10 -20.14 5.88 -11.66 -0.07 -20.20 16 15 C 0.21 4.60 4.95 -5.19 -0.03 4.58 16 16 C -0.53 -14.04 9.83 -34.44 -0.34 -14.38 16 17 H 0.08 2.33 7.90 -52.48 -0.41 1.92 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 20 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 24 C -0.12 -1.36 9.68 -39.64 -0.38 -1.74 16 25 C -0.06 -0.59 9.62 -39.17 -0.38 -0.97 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.40 7.65 -52.49 -0.40 0.99 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.39 8.08 -51.92 -0.42 0.97 16 34 H 0.15 1.57 8.08 -51.93 -0.42 1.15 16 35 H 0.42 7.31 8.50 -34.47 -0.29 7.02 16 36 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 37 H 0.03 0.73 7.12 -51.93 -0.37 0.36 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.14 1.19 7.61 -52.48 -0.40 0.79 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -34.17 362.37 -9.07 -43.25 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.22 Total: 5.08 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.03 Total: -16.81 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.71 Total: -45.20 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -2.74 Total: -48.81 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Atomic # 16 Polarization: 42.49 SS G_CDS: -0.58 Total: 41.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.17 -9.07 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451453528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.931 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds