Wall clock time and date at job start Sat Apr 11 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47183 * 2 1 4 4 C 1.34709 * 116.99971 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00215 * 0.02562 * 4 3 2 6 6 C 1.47723 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.39633 * 120.15316 * 179.97438 * 6 4 3 8 8 C 1.37938 * 119.84852 * 180.30600 * 7 6 4 9 9 C 1.38372 * 120.14963 * 359.44003 * 8 7 6 10 10 C 1.50708 * 119.84796 * 180.28044 * 9 8 7 11 11 S 1.81398 * 109.47294 * 270.28026 * 10 9 8 12 12 O 1.42098 * 110.53826 * 291.62543 * 11 10 9 13 13 O 1.42096 * 110.54450 * 68.37554 * 11 10 9 14 14 N 1.65599 * 104.44798 * 179.97438 * 11 10 9 15 15 C 1.46505 * 119.99880 * 65.00200 * 14 11 10 16 16 C 1.50693 * 109.47126 * 164.99850 * 15 14 11 17 17 H 1.08007 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00311 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00423 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99721 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47073 * 89.99815 * 20 18 16 22 22 H 1.48500 * 109.47272 * 210.00022 * 20 18 16 23 23 H 1.48496 * 109.47311 * 330.00117 * 20 18 16 24 24 C 1.38363 * 120.30454 * 0.56443 * 9 8 7 25 25 C 1.37948 * 120.14806 * 359.71588 * 24 9 8 26 26 H 1.09003 * 109.47471 * 60.00245 * 1 2 3 27 27 H 1.09004 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47224 * 299.99983 * 1 2 3 29 29 H 1.09004 * 109.46780 * 239.99718 * 2 1 3 30 30 H 1.09004 * 109.47030 * 120.00059 * 2 1 3 31 31 H 1.08002 * 120.07109 * 0.02562 * 7 6 4 32 32 H 1.07998 * 119.92553 * 179.70097 * 8 7 6 33 33 H 1.09000 * 109.46665 * 30.28514 * 10 9 8 34 34 H 1.08996 * 109.46685 * 150.27641 * 10 9 8 35 35 H 0.96991 * 120.00209 * 244.99585 * 14 11 10 36 36 H 1.09006 * 109.47094 * 284.99620 * 15 14 11 37 37 H 1.08996 * 109.47451 * 44.99656 * 15 14 11 38 38 H 0.97004 * 120.00060 * 180.02562 * 19 18 16 39 39 H 1.07997 * 119.93022 * 179.74159 * 24 9 8 40 40 H 1.08004 * 120.07515 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0015 6 6 3.9141 2.9104 -0.0011 7 6 5.2979 3.0970 -0.0012 8 6 5.8184 4.3744 0.0047 9 6 4.9727 5.4695 -0.0012 10 6 5.5487 6.8622 -0.0012 11 16 5.7799 7.4209 1.7091 12 8 4.5236 7.6201 2.3426 13 8 6.8097 6.6745 2.3427 14 7 6.4111 8.9450 1.5640 15 6 5.6100 10.0158 0.9656 16 6 6.2401 11.3487 1.2773 17 1 7.1465 11.3938 1.8630 18 6 5.6597 12.5107 0.8148 19 7 6.2093 13.6739 1.0872 20 14 4.0925 12.4326 -0.1987 21 1 2.9152 12.4975 0.7042 22 1 4.0560 13.5782 -1.1429 23 1 4.0602 11.1599 -0.9632 24 6 3.6005 5.2920 -0.0011 25 6 3.0665 4.0200 -0.0011 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9591 2.2431 -0.0011 32 1 6.8885 4.5201 0.0095 33 1 6.5100 6.8577 -0.5151 34 1 4.8652 7.5380 -0.5150 35 1 7.3111 9.1289 1.8753 36 1 5.5679 9.8776 -0.1148 37 1 4.6004 9.9865 1.3753 38 1 5.8007 14.4915 0.7622 39 1 2.9460 6.1510 -0.0015 40 1 1.9952 3.8828 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451453528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:22 Heat of formation + Delta-G solvation = -162.457325 kcal Electronic energy + Delta-G solvation = -24695.101884 eV Core-core repulsion = 20794.000586 eV Total energy + Delta-G solvation = -3901.101298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.74209 -40.15850 -38.17719 -37.74541 -37.02098 -36.49029 -34.44569 -34.21355 -32.63935 -32.11296 -29.33285 -29.17261 -25.12169 -23.97978 -23.87693 -23.46236 -21.91612 -20.48628 -19.36426 -19.21817 -18.22249 -18.04300 -17.66988 -17.63085 -17.33792 -16.54898 -16.29865 -16.10765 -15.59164 -15.26104 -15.23028 -14.76253 -14.66147 -14.45410 -14.39383 -13.95792 -13.74964 -13.69452 -13.56165 -13.20484 -13.09378 -13.08159 -12.95620 -12.70635 -12.55828 -12.40937 -12.18016 -12.14329 -11.81216 -11.72676 -11.60494 -11.57400 -10.87251 -10.34150 -10.15704 -9.90786 -8.30203 -6.37944 -0.99613 -0.34023 0.21947 1.32747 1.41417 1.45186 1.50973 1.52967 1.83170 2.36667 2.56313 2.77847 3.04617 3.20216 3.24509 3.54735 3.66896 3.85474 3.99631 4.01563 4.05298 4.17560 4.32831 4.35798 4.41793 4.49059 4.66627 4.77743 4.91903 4.92100 5.02927 5.05053 5.10408 5.11825 5.16508 5.27082 5.36807 5.45039 5.65012 6.19758 6.27499 6.55727 6.69056 7.25674 8.85580 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002576 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.785854 B =10866.085789 C =11628.749936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.514 3.486 5 O -0.533 6.533 6 C -0.138 4.138 7 C -0.058 4.058 8 C -0.122 4.122 9 C -0.064 4.064 10 C -0.576 4.576 11 S 2.609 3.391 12 O -0.988 6.988 13 O -0.987 6.987 14 N -1.106 6.106 15 C 0.215 3.785 16 C -0.543 4.543 17 H 0.043 0.957 18 C 0.010 3.990 19 N -0.943 5.943 20 Si 0.938 3.062 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.223 1.223 24 C -0.127 4.127 25 C -0.054 4.054 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.171 0.829 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.269 0.731 39 H 0.159 0.841 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.132 -25.241 -8.187 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.361 3.639 5 O -0.424 6.424 6 C -0.140 4.140 7 C -0.076 4.076 8 C -0.141 4.141 9 C -0.066 4.066 10 C -0.706 4.706 11 S 2.705 3.295 12 O -0.978 6.978 13 O -0.977 6.977 14 N -0.865 5.865 15 C 0.089 3.911 16 C -0.582 4.582 17 H 0.062 0.938 18 C -0.189 4.189 19 N -0.583 5.583 20 Si 0.760 3.240 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.145 1.145 24 C -0.146 4.146 25 C -0.072 4.072 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.168 0.832 32 H 0.178 0.822 33 H 0.197 0.803 34 H 0.188 0.812 35 H 0.250 0.750 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.176 0.824 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.332 -25.808 -7.434 28.776 hybrid contribution 0.307 0.691 -0.532 0.924 sum -10.026 -25.117 -7.967 28.193 Atomic orbital electron populations 1.21841 0.90272 1.04498 1.03823 1.23364 0.97119 0.78633 1.02849 1.86545 1.22668 1.34189 1.83602 1.21259 0.81059 0.89676 0.71948 1.90816 1.61071 1.43204 1.47326 1.19339 0.94602 0.90238 1.09796 1.21417 0.93487 0.98293 0.94382 1.21431 1.01800 0.91041 0.99863 1.19515 0.94591 0.92648 0.99869 1.29631 1.14010 1.02679 1.24258 1.04839 0.73440 0.72826 0.78377 1.93539 1.45898 1.84895 1.73514 1.93533 1.57979 1.71753 1.74447 1.55273 1.27973 1.25242 1.78033 1.19376 0.91413 0.85900 0.94367 1.21375 1.11446 0.90722 1.34690 0.93825 1.25911 1.01285 0.94564 0.97161 1.70039 1.42267 0.98696 1.47254 0.85858 0.78744 0.80192 0.79231 1.19445 1.20713 1.14517 1.21548 0.94450 0.98943 0.99642 1.21683 1.01495 0.90553 0.93509 0.91092 0.88065 0.91316 0.90904 0.91164 0.83246 0.82194 0.80336 0.81162 0.74967 0.93085 0.95012 0.92176 0.82384 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 71.98 0.74 -0.42 16 2 C 0.05 0.72 6.19 71.98 0.45 1.17 16 3 O -0.35 -6.51 9.47 -56.19 -0.53 -7.04 16 4 C 0.51 11.38 7.90 70.33 0.56 11.94 16 5 O -0.53 -14.15 16.14 19.93 0.32 -13.83 16 6 C -0.14 -2.88 5.87 -20.10 -0.12 -2.99 16 7 C -0.06 -1.17 9.60 22.54 0.22 -0.95 16 8 C -0.12 -2.40 9.68 22.23 0.22 -2.19 16 9 C -0.06 -1.33 5.15 -19.80 -0.10 -1.43 16 10 C -0.58 -11.46 6.19 71.24 0.44 -11.02 16 11 S 2.61 80.71 5.44 -56.49 -0.31 80.41 16 12 O -0.99 -37.26 17.50 -127.65 -2.23 -39.49 16 13 O -0.99 -34.46 18.08 -127.65 -2.31 -36.77 16 14 N -1.11 -39.55 5.88 -190.79 -1.12 -40.67 16 15 C 0.22 8.92 4.95 85.63 0.42 9.35 16 16 C -0.54 -28.93 9.83 25.60 0.25 -28.68 16 17 H 0.04 2.57 7.90 -2.91 -0.02 2.55 16 18 C 0.01 0.52 5.47 84.65 0.46 0.99 16 19 N -0.94 -56.05 13.96 21.45 0.30 -55.75 16 20 Si 0.94 39.34 27.47 68.60 1.88 41.22 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.22 -7.81 6.54 99.48 0.65 -7.15 16 24 C -0.13 -2.45 9.68 22.23 0.22 -2.23 16 25 C -0.05 -0.99 9.62 22.54 0.22 -0.78 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.15 2.74 7.65 -2.91 -0.02 2.72 16 32 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.18 2.50 8.08 -2.39 -0.02 2.49 16 34 H 0.17 2.72 8.08 -2.39 -0.02 2.70 16 35 H 0.42 14.74 8.50 -96.76 -0.82 13.92 16 36 H 0.05 1.81 7.20 -2.38 -0.02 1.79 16 37 H 0.03 1.34 7.12 -2.39 -0.02 1.32 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.16 2.24 7.61 -2.91 -0.02 2.22 16 Total: -1.00 -75.87 362.37 0.16 -75.71 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.19 Total: 23.45 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.97 Total: -27.24 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -0.82 Total: -96.42 kcal Atomic # 8 Polarization: -92.38 SS G_CDS: -4.75 Total: -97.13 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.88 Total: 41.22 kcal Atomic # 16 Polarization: 80.71 SS G_CDS: -0.31 Total: 80.41 kcal Total: -75.87 0.16 -75.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451453528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.746 kcal (2) G-P(sol) polarization free energy of solvation -75.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds