Wall clock time and date at job start Sat Apr 11 2020 01:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81399 * 103.00093 * 2 1 4 4 H 1.09001 * 109.46706 * 304.99700 * 3 2 1 5 5 C 1.52997 * 109.47137 * 64.99780 * 3 2 1 6 6 C 1.53002 * 109.47059 * 185.00089 * 3 2 1 7 7 C 1.52993 * 109.47369 * 64.99893 * 6 3 2 8 8 C 1.50706 * 109.47462 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99499 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00475 * 180.02562 * 8 7 6 11 11 C 1.39265 * 120.00275 * 175.75181 * 10 8 7 12 12 C 1.39461 * 119.83869 * 34.72468 * 11 10 8 13 13 C 1.36377 * 120.18195 * 179.71671 * 12 11 10 14 14 C 1.40895 * 119.84500 * 0.57629 * 13 12 11 15 15 C 1.41151 * 120.15526 * 179.72208 * 14 13 12 16 16 H 1.07999 * 120.00286 * 34.74286 * 15 14 13 17 17 C 1.39907 * 119.99606 * 214.74759 * 15 14 13 18 18 N 1.30873 * 119.99900 * 355.59580 * 17 15 14 19 19 Si 1.86798 * 119.99797 * 175.59736 * 17 15 14 20 20 H 1.48491 * 109.47015 * 90.00014 * 19 17 15 21 21 H 1.48499 * 109.47022 * 210.00066 * 19 17 15 22 22 H 1.48497 * 109.47171 * 329.99572 * 19 17 15 23 23 C 1.40838 * 119.68453 * 359.69425 * 14 13 12 24 24 C 1.36477 * 119.81779 * 0.02562 * 23 14 13 25 25 Cl 1.73599 * 119.92835 * 180.02562 * 24 23 14 26 26 H 1.09004 * 109.47043 * 60.00561 * 1 2 3 27 27 H 1.09004 * 109.47416 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47539 * 299.99804 * 1 2 3 29 29 H 1.09001 * 109.46933 * 60.00057 * 5 3 2 30 30 H 1.08998 * 109.46887 * 300.00047 * 5 3 2 31 31 H 1.09002 * 109.47261 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.47106 * 185.00003 * 6 3 2 33 33 H 1.09004 * 109.47238 * 304.99389 * 6 3 2 34 34 H 1.08998 * 109.47096 * 300.00116 * 7 6 3 35 35 H 1.09004 * 109.47630 * 60.00039 * 7 6 3 36 36 H 0.97006 * 119.99750 * 355.75151 * 10 8 7 37 37 H 1.08007 * 119.90817 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.07796 * 180.26722 * 13 12 11 39 39 H 0.97002 * 119.99943 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.09062 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2540 -0.8419 5 6 1.7427 2.4016 1.3073 6 6 3.7369 1.9411 -0.1257 7 6 4.1988 1.4191 -1.4877 8 6 5.6909 1.5907 -1.6118 9 8 6.3227 2.0817 -0.7004 10 7 6.3232 1.1985 -2.7355 11 6 7.6869 1.4373 -2.8867 12 6 8.5287 1.3796 -1.7763 13 6 9.8661 1.6066 -1.9173 14 6 10.3955 1.9119 -3.1868 15 6 11.7777 2.1538 -3.3392 16 1 12.4906 1.6112 -2.7360 17 6 12.2243 3.0964 -4.2716 18 7 11.3677 3.6911 -5.0624 19 14 14.0431 3.5060 -4.3878 20 1 14.6935 2.5976 -5.3659 21 1 14.2060 4.9128 -4.8344 22 1 14.6754 3.3334 -3.0554 23 6 9.5389 1.9741 -4.3030 24 6 8.2036 1.7390 -4.1477 25 17 7.1453 1.8143 -5.5218 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.2353 1.9149 2.1491 30 1 0.6635 2.2778 1.3968 31 1 1.9875 3.4637 1.3071 32 1 3.9902 2.9975 -0.0366 33 1 4.2339 1.3804 0.6660 34 1 3.9456 0.3627 -1.5768 35 1 3.7019 1.9798 -2.2794 36 1 5.8285 0.7499 -3.4390 37 1 8.1211 1.1506 -0.8027 38 1 10.5171 1.5573 -1.0570 39 1 11.6772 4.3449 -5.7087 40 1 9.9378 2.2072 -5.2793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452645660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:24 Heat of formation + Delta-G solvation = -58.123640 kcal Electronic energy + Delta-G solvation = -22336.676056 eV Core-core repulsion = 18880.808170 eV Total energy + Delta-G solvation = -3455.867885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30342 -39.32654 -37.23349 -36.63911 -36.00556 -34.76774 -32.08826 -31.30722 -30.68053 -29.47636 -27.25362 -25.47230 -23.58893 -22.79270 -22.25029 -21.08684 -19.42050 -18.43901 -17.93059 -17.54770 -17.15907 -16.59521 -16.06440 -15.81048 -15.47193 -15.20620 -15.03719 -14.68673 -14.53676 -14.30947 -14.19483 -13.87567 -13.55319 -13.49034 -13.38583 -13.18551 -12.82155 -12.66699 -12.59297 -12.35300 -12.27762 -12.05846 -11.96446 -11.93945 -11.72980 -11.59007 -11.22986 -10.82191 -10.65941 -10.61176 -9.40380 -8.82696 -8.62396 -8.55131 -6.39631 0.60490 0.79129 0.94941 1.38712 1.41032 1.45419 1.54886 1.70452 1.79015 2.22360 2.30635 2.72598 3.51748 3.63000 3.72811 4.04024 4.14130 4.33855 4.36474 4.37499 4.40990 4.49869 4.64909 4.74434 4.80156 4.81922 4.92364 4.97238 5.00211 5.04752 5.19432 5.22886 5.28248 5.29205 5.45935 5.71969 5.85391 6.03251 6.22384 6.51344 6.63589 6.85620 6.89311 7.33211 8.36904 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.002490 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.810713 B =11242.958049 C =11865.105249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.310 6.310 3 C -0.042 4.042 4 H 0.104 0.896 5 C -0.146 4.146 6 C -0.080 4.080 7 C -0.127 4.127 8 C 0.500 3.500 9 O -0.571 6.571 10 N -0.648 5.648 11 C 0.026 3.974 12 C -0.084 4.084 13 C -0.212 4.212 14 C 0.078 3.922 15 C -0.488 4.488 16 H 0.081 0.919 17 C 0.028 3.972 18 N -0.836 5.836 19 Si 0.990 3.010 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.153 4.153 24 C -0.029 4.029 25 Cl -0.086 7.086 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.414 0.586 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.287 0.713 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.533 -3.508 4.594 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.085 6.085 3 C -0.171 4.171 4 H 0.122 0.878 5 C -0.205 4.205 6 C -0.119 4.119 7 C -0.167 4.167 8 C 0.290 3.710 9 O -0.450 6.450 10 N -0.293 5.293 11 C -0.069 4.069 12 C -0.104 4.104 13 C -0.232 4.232 14 C 0.075 3.925 15 C -0.518 4.518 16 H 0.099 0.901 17 C -0.185 4.185 18 N -0.463 5.463 19 Si 0.811 3.189 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.184 1.184 23 C -0.174 4.174 24 C -0.058 4.058 25 Cl -0.058 7.058 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.251 0.749 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.590 -3.854 4.920 19.613 hybrid contribution -0.120 1.089 -0.613 1.255 sum -18.710 -2.765 4.307 19.397 Atomic orbital electron populations 1.23438 0.91606 1.07179 1.05805 1.87202 1.10342 1.12913 1.97995 1.23155 0.98440 0.92830 1.02658 0.87816 1.22059 1.01772 1.01306 0.95349 1.21113 0.92452 1.02293 0.96023 1.21735 0.88594 1.05624 1.00701 1.21538 0.91578 0.76599 0.81302 1.90659 1.69060 1.45444 1.39885 1.43030 1.06823 1.58476 1.20962 1.17010 0.84158 1.13465 0.92300 1.20509 0.92666 1.00027 0.97181 1.21054 0.94642 1.10725 0.96767 1.17917 0.94400 0.89828 0.90390 1.19740 0.92357 1.20537 1.19162 0.90068 1.26791 1.04673 0.94335 0.92716 1.69811 1.37790 1.21862 1.16795 0.85067 0.75985 0.78192 0.79665 1.18464 1.19529 1.18371 1.21108 0.90637 1.05102 1.00542 1.20462 0.91654 1.07089 0.86579 1.98246 1.66306 1.97239 1.43975 0.89497 0.87519 0.89577 0.92166 0.91097 0.90903 0.90303 0.92097 0.86812 0.86360 0.74907 0.86131 0.87353 0.90233 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.45 113.37 1.18 0.06 16 2 S -0.31 -5.33 20.60 -56.49 -1.16 -6.49 16 3 C -0.04 -0.65 2.82 30.59 0.09 -0.57 16 4 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.15 -1.93 9.10 71.98 0.66 -1.28 16 6 C -0.08 -1.69 3.97 30.59 0.12 -1.57 16 7 C -0.13 -2.76 5.53 29.85 0.16 -2.59 16 8 C 0.50 16.49 7.66 87.66 0.67 17.16 16 9 O -0.57 -23.63 13.37 -3.04 -0.04 -23.67 16 10 N -0.65 -22.33 5.01 -303.03 -1.52 -23.85 16 11 C 0.03 1.12 6.32 38.58 0.24 1.37 16 12 C -0.08 -3.95 8.62 22.13 0.19 -3.76 16 13 C -0.21 -10.65 9.74 22.49 0.22 -10.43 16 14 C 0.08 4.17 5.55 -21.28 -0.12 4.05 16 15 C -0.49 -25.91 9.02 23.39 0.21 -25.70 16 16 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 17 C 0.03 1.39 5.42 85.24 0.46 1.85 16 18 N -0.84 -43.42 10.59 21.82 0.23 -43.19 16 19 Si 0.99 38.18 29.56 68.60 2.03 40.21 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 C -0.15 -7.96 8.38 22.49 0.19 -7.77 16 24 C -0.03 -1.34 6.30 22.18 0.14 -1.20 16 25 Cl -0.09 -3.21 27.92 -2.72 -0.08 -3.29 16 26 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.70 7.14 -2.39 -0.02 0.68 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.72 6.92 -2.39 -0.02 0.70 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.78 8.10 -2.39 -0.02 1.77 16 33 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 34 H 0.11 2.25 7.13 -2.39 -0.02 2.23 16 35 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 11.68 8.05 -92.70 -0.75 10.93 16 37 H 0.12 5.59 6.18 -2.91 -0.02 5.58 16 38 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.29 13.58 8.30 -92.71 -0.77 12.82 16 40 H 0.13 6.99 6.13 -2.91 -0.02 6.97 16 Total: -1.00 -63.16 358.07 4.20 -58.96 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.32 Total: 31.68 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 4.42 Total: -30.37 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -1.29 Total: -67.03 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.67 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.16 Total: -6.49 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.08 Total: -3.29 kcal Total: -63.16 4.20 -58.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452645660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.841 kcal (2) G-P(sol) polarization free energy of solvation -63.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds