Wall clock time and date at job start Sat Apr 11 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47031 * 2 1 4 4 C 1.50703 * 109.47007 * 119.99768 * 2 1 3 5 5 H 1.08010 * 119.99891 * 120.00166 * 4 2 1 6 6 C 1.37872 * 120.00259 * 299.99960 * 4 2 1 7 7 N 1.31517 * 119.99950 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00226 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46876 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46967 * 120.00112 * 8 6 4 11 11 H 1.48500 * 109.47211 * 240.00337 * 8 6 4 12 12 N 1.46505 * 109.47085 * 239.99574 * 2 1 3 13 13 C 1.34781 * 119.99647 * 85.00412 * 12 2 1 14 14 O 1.21731 * 119.99742 * 359.71727 * 13 12 2 15 15 C 1.46160 * 119.99656 * 180.02562 * 13 12 2 16 16 C 1.35085 * 119.99929 * 172.94120 * 15 13 12 17 17 C 1.46872 * 120.00082 * 349.03247 * 16 15 13 18 18 C 1.40071 * 120.08973 * 316.06310 * 17 16 15 19 19 C 1.36574 * 119.90965 * 179.73927 * 18 17 16 20 20 C 1.39328 * 120.09187 * 0.55648 * 19 18 17 21 21 S 1.76196 * 119.91201 * 179.71673 * 20 19 18 22 22 C 1.81401 * 103.00088 * 359.97438 * 21 20 19 23 23 F 1.39895 * 109.47522 * 300.00075 * 22 21 20 24 24 F 1.39902 * 109.46949 * 59.99995 * 22 21 20 25 25 C 1.39328 * 120.17603 * 359.69561 * 20 19 18 26 26 C 1.36576 * 120.08861 * 0.02562 * 25 20 19 27 27 H 1.08993 * 109.47081 * 300.00039 * 1 2 3 28 28 H 1.09000 * 109.46825 * 60.00338 * 1 2 3 29 29 H 1.09008 * 109.46823 * 180.02562 * 1 2 3 30 30 H 0.96994 * 120.00522 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00128 * 264.99550 * 12 2 1 32 32 H 1.08002 * 120.00143 * 352.93435 * 15 13 12 33 33 H 1.08003 * 120.00332 * 169.03218 * 16 15 13 34 34 H 1.08007 * 120.03896 * 359.97438 * 18 17 16 35 35 H 1.08007 * 119.95478 * 180.25177 * 19 18 17 36 36 H 1.09002 * 109.47445 * 179.97438 * 22 21 20 37 37 H 1.07994 * 119.95651 * 180.02562 * 25 20 19 38 38 H 1.08004 * 120.04565 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5866 4.8161 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8528 1.1615 -2.4130 15 6 2.6338 -0.7076 -3.5506 16 6 2.6285 -0.0759 -4.7447 17 6 1.9196 1.2014 -4.8967 18 6 0.6419 1.3652 -4.3466 19 6 -0.0117 2.5563 -4.4856 20 6 0.5858 3.6038 -5.1833 21 16 -0.2649 5.1359 -5.3661 22 6 -1.8277 4.8416 -4.4935 23 9 -2.5046 3.7757 -5.0956 24 9 -1.5632 4.5298 -3.1555 25 6 1.8544 3.4432 -5.7365 26 6 2.5170 2.2571 -5.5971 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 0.7087 1.1614 3.4843 31 1 2.2491 -1.6318 -1.1525 32 1 2.9977 -1.7218 -3.4779 33 1 3.1456 -0.5101 -5.5876 34 1 0.1759 0.5519 -3.8101 35 1 -0.9953 2.6847 -4.0582 36 1 -2.4454 5.7384 -4.5418 37 1 2.3144 4.2576 -6.2763 38 1 3.5006 2.1335 -6.0259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491828299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:46 Heat of formation + Delta-G solvation = -74.671782 kcal Electronic energy + Delta-G solvation = -25144.238899 eV Core-core repulsion = 21135.856753 eV Total energy + Delta-G solvation = -4008.382147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.41966 -47.40880 -39.66085 -38.28467 -34.98138 -33.49352 -32.38516 -31.05175 -29.93186 -28.53426 -27.16425 -25.26903 -24.16752 -22.53022 -21.94466 -20.08387 -19.10083 -18.82180 -18.07072 -17.59717 -17.23483 -16.69603 -16.09283 -15.40808 -14.96164 -14.78680 -14.39861 -14.30367 -14.02865 -13.89138 -13.75248 -13.72341 -13.28534 -13.04119 -12.80951 -12.76671 -12.39191 -12.08834 -11.66173 -11.28824 -11.09249 -10.97190 -10.94365 -10.73370 -10.53656 -10.36348 -10.24372 -10.18362 -9.18927 -9.07564 -9.03113 -8.63790 -8.45004 -7.84036 -7.43387 -6.12127 -4.21566 0.62439 0.79242 1.67682 1.77143 1.95156 3.23416 3.31171 3.33808 3.53826 3.91990 3.97825 4.12320 4.17528 4.22506 4.41488 4.84934 4.92324 5.02036 5.20118 5.31600 5.46055 5.57675 5.67120 5.86187 6.10120 6.18272 6.30037 6.39863 6.56255 6.77604 6.83923 6.95945 7.03986 7.15491 7.46802 7.57541 7.70436 7.92528 8.15441 8.67964 8.79054 9.14747 9.46311 10.93813 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.003493 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.974764 B = 8013.928523 C = 9385.277299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.518 3.482 14 O -0.541 6.541 15 C -0.190 4.190 16 C -0.052 4.052 17 C -0.050 4.050 18 C -0.011 4.011 19 C -0.127 4.127 20 C -0.088 4.088 21 S -0.113 6.113 22 C 0.274 3.726 23 F -0.182 7.182 24 F -0.174 7.174 25 C -0.103 4.103 26 C -0.091 4.091 27 H 0.090 0.910 28 H 0.014 0.986 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 3.755 -18.479 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.347 5.347 13 C 0.305 3.695 14 O -0.422 6.422 15 C -0.212 4.212 16 C -0.072 4.072 17 C -0.052 4.052 18 C -0.031 4.031 19 C -0.150 4.150 20 C -0.200 4.200 21 S 0.124 5.876 22 C 0.111 3.889 23 F -0.164 7.164 24 F -0.155 7.155 25 C -0.126 4.126 26 C -0.111 4.111 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.142 0.858 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.140 5.760 -18.807 19.785 hybrid contribution 0.114 -2.192 1.812 2.846 sum -2.026 3.568 -16.995 17.483 Atomic orbital electron populations 1.22055 0.98425 0.98978 1.00864 1.18741 0.90986 0.94026 0.80044 0.93318 1.21263 1.32396 1.13202 0.90379 0.92069 1.24890 0.94807 0.94942 0.99066 1.69914 1.35878 1.22468 1.23764 0.86404 0.78607 0.79534 0.82617 1.19741 1.20870 1.20868 1.46552 1.63998 1.13365 1.10776 1.18377 0.79455 0.87453 0.84223 1.90858 1.50930 1.15644 1.84718 1.23340 1.03973 1.00235 0.93607 1.22229 0.95025 0.93010 0.96903 1.18959 0.94330 0.94044 0.97893 1.20718 0.93183 0.96867 0.92306 1.20878 1.00736 0.93388 0.99997 1.21448 0.98569 0.95262 1.04697 1.85982 1.14059 1.18689 1.68912 1.24237 0.94984 0.91379 0.78270 1.93105 1.81050 1.59404 1.82796 1.93184 1.94176 1.94103 1.34039 1.20176 0.92867 0.98133 1.01473 1.20778 0.99202 0.92422 0.98725 0.89194 0.96740 0.95566 0.92635 0.77944 0.85306 0.84949 0.86150 0.85968 0.82954 0.85815 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.75 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 N -0.70 -14.52 5.06 -56.40 -0.29 -14.80 16 13 C 0.52 10.16 6.75 -13.08 -0.09 10.07 16 14 O -0.54 -12.43 11.82 5.16 0.06 -12.37 16 15 C -0.19 -2.72 9.91 -37.53 -0.37 -3.09 16 16 C -0.05 -0.66 9.80 -37.21 -0.36 -1.03 16 17 C -0.05 -0.76 4.53 -105.03 -0.48 -1.24 16 18 C -0.01 -0.18 6.54 -39.50 -0.26 -0.44 16 19 C -0.13 -2.14 8.62 -39.78 -0.34 -2.48 16 20 C -0.09 -1.32 6.13 -38.77 -0.24 -1.56 16 21 S -0.11 -1.38 22.16 -107.50 -2.38 -3.76 16 22 C 0.27 3.03 5.37 101.05 0.54 3.58 16 23 F -0.18 -2.24 15.63 2.25 0.04 -2.21 16 24 F -0.17 -2.54 15.63 2.25 0.04 -2.51 16 25 C -0.10 -1.42 9.73 -39.78 -0.39 -1.81 16 26 C -0.09 -1.24 9.74 -39.49 -0.38 -1.62 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.39 6.94 8.52 -40.82 -0.35 6.59 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.12 2.14 7.03 -52.48 -0.37 1.77 16 35 H 0.12 2.07 4.52 -52.48 -0.24 1.83 16 36 H 0.15 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.26 341.89 -8.54 -40.80 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.16 Total: 7.65 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.60 Total: -9.18 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.34 Total: -39.32 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.06 Total: -12.37 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.07 Total: -4.72 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.38 Total: -3.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.26 -8.54 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491828299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.873 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds