Wall clock time and date at job start Sat Apr 11 2020 01:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47118 * 2 1 4 4 C 1.46505 * 120.00014 * 89.99439 * 3 2 1 5 5 C 1.50708 * 109.46536 * 90.00402 * 4 3 2 6 6 H 1.07997 * 120.00013 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99601 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99770 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00244 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47204 * 89.99768 * 9 7 5 11 11 H 1.48494 * 109.47270 * 210.00026 * 9 7 5 12 12 H 1.48502 * 109.47052 * 329.99882 * 9 7 5 13 13 C 1.34779 * 120.00189 * 269.72834 * 3 2 1 14 14 O 1.21807 * 120.00193 * 179.97438 * 13 3 2 15 15 C 1.41302 * 119.99895 * 359.97438 * 13 3 2 16 16 C 1.35102 * 119.99946 * 180.02562 * 15 13 3 17 17 S 1.76206 * 120.00210 * 0.02562 * 16 15 13 18 18 C 1.76197 * 99.99944 * 173.94790 * 17 16 15 19 19 C 1.38858 * 120.07589 * 352.32056 * 18 17 16 20 20 C 1.38316 * 119.93080 * 179.97438 * 19 18 17 21 21 F 1.35097 * 119.97219 * 179.97438 * 20 19 18 22 22 C 1.38508 * 120.06183 * 0.02562 * 20 19 18 23 23 C 1.38272 * 120.14413 * 359.95848 * 22 20 19 24 24 C 1.38280 * 120.07646 * 359.78217 * 23 22 20 25 25 F 1.35095 * 120.03506 * 180.25805 * 24 23 22 26 26 H 1.09000 * 109.46865 * 60.00142 * 1 2 3 27 27 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46950 * 299.99713 * 1 2 3 29 29 H 1.09005 * 109.47316 * 240.00475 * 2 1 3 30 30 H 1.09000 * 109.46865 * 119.99858 * 2 1 3 31 31 H 1.08999 * 109.47327 * 210.00111 * 4 3 2 32 32 H 1.08992 * 109.47135 * 330.00637 * 4 3 2 33 33 H 0.96995 * 119.99940 * 179.97438 * 8 7 5 34 34 H 1.07999 * 119.99700 * 0.02562 * 15 13 3 35 35 H 1.08005 * 120.00055 * 179.97438 * 16 15 13 36 36 H 1.08008 * 120.03291 * 359.95192 * 19 18 17 37 37 H 1.08001 * 119.92795 * 179.97438 * 22 20 19 38 38 H 1.08004 * 119.96473 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 1.2688 5 6 3.6858 1.8351 1.7038 6 1 4.3429 1.2310 1.0958 7 6 4.1491 2.3897 2.8780 8 7 5.3910 2.1827 3.2579 9 14 3.0123 3.4340 3.9300 10 1 2.3076 2.5670 4.9081 11 1 3.8092 4.4544 4.6571 12 1 2.0164 4.1108 3.0609 13 6 2.2482 2.0148 -1.1672 14 8 2.6538 3.1633 -1.1672 15 6 2.0187 1.3466 -2.3909 16 6 2.2496 1.9814 -3.5609 17 16 2.8376 3.6425 -3.5609 18 6 3.1203 3.8670 -5.2855 19 6 3.0125 2.7892 -6.1544 20 6 3.2345 2.9690 -7.5078 21 9 3.1303 1.9209 -8.3538 22 6 3.5645 4.2223 -7.9963 23 6 3.6722 5.2975 -7.1336 24 6 3.4463 5.1256 -5.7803 25 9 3.5467 6.1778 -4.9389 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.0955 3.1411 1.1384 32 1 1.5817 1.6878 2.0283 33 1 5.7170 2.5732 4.0838 34 1 1.6587 0.3283 -2.3908 35 1 2.0746 1.4706 -4.4962 36 1 2.7559 1.8115 -5.7738 37 1 3.7377 4.3601 -9.0534 38 1 3.9293 6.2737 -7.5178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493528346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:52 Heat of formation + Delta-G solvation = -59.581310 kcal Electronic energy + Delta-G solvation = -24383.520931 eV Core-core repulsion = 20375.793156 eV Total energy + Delta-G solvation = -4007.727775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.22151 -49.04085 -39.59266 -38.86248 -35.66043 -33.30418 -32.55145 -31.66353 -30.37178 -30.14052 -28.00426 -24.57670 -23.85873 -23.08704 -22.88678 -21.22495 -18.93141 -18.20861 -17.72534 -17.35801 -17.24210 -16.91524 -16.14605 -16.11787 -15.54394 -15.49210 -14.80112 -14.63725 -14.62080 -14.28331 -13.75120 -13.55785 -13.54995 -13.22170 -12.84828 -12.62999 -12.56335 -12.43095 -12.22965 -11.86766 -11.56225 -11.27741 -11.02222 -10.93070 -10.86069 -10.63479 -10.48289 -10.11443 -9.77650 -9.54696 -8.97557 -8.90827 -8.60300 -7.92714 -7.24475 -6.09612 -4.08757 0.50276 0.67545 1.22708 1.49347 2.28298 3.01890 3.26261 3.35008 3.39016 3.71911 3.83190 3.90372 3.92296 4.23671 4.38964 4.52494 4.69644 4.90537 5.09653 5.16204 5.23226 5.39095 5.47628 5.49088 5.55129 5.59237 5.66181 5.75102 5.82029 5.90123 5.96652 6.10147 6.36739 6.44116 6.64908 6.95084 7.25746 7.58840 8.13769 8.43673 8.77190 8.94117 9.50190 11.03730 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.016515 B = 0.003115 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.030722 B = 8986.174432 C =10036.953018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.581 5.581 4 C 0.215 3.785 5 C -0.529 4.529 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.527 3.473 14 O -0.518 6.518 15 C -0.181 4.181 16 C -0.153 4.153 17 S 0.201 5.799 18 C -0.177 4.177 19 C -0.147 4.147 20 C 0.106 3.894 21 F -0.136 7.136 22 C -0.138 4.138 23 C -0.109 4.109 24 C 0.108 3.892 25 F -0.124 7.124 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -0.758 -20.787 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.310 5.310 4 C 0.095 3.905 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.318 3.682 14 O -0.401 6.401 15 C -0.215 4.215 16 C -0.288 4.288 17 S 0.458 5.542 18 C -0.289 4.289 19 C -0.171 4.171 20 C 0.085 3.915 21 F -0.115 7.115 22 C -0.160 4.160 23 C -0.129 4.129 24 C 0.083 3.917 25 F -0.102 7.102 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.200 0.715 -19.593 21.252 hybrid contribution -0.629 -0.750 -0.484 1.092 sum -8.829 -0.035 -20.077 21.933 Atomic orbital electron populations 1.22243 0.96537 1.01672 1.02418 1.21532 0.93542 0.83641 1.03289 1.47795 1.62793 1.13384 1.07050 1.19695 0.97248 0.93711 0.79894 1.21307 0.95279 1.33014 1.07176 0.90733 1.24848 0.95017 0.95724 0.97342 1.69891 1.15187 1.44890 1.23502 0.86874 0.81330 0.80905 0.80820 1.20130 1.20901 1.18786 1.16993 0.79707 0.86799 0.84701 1.90575 1.46871 1.18025 1.84670 1.21953 1.05821 1.01625 0.92053 1.26411 1.00865 1.00133 1.01367 1.87352 1.70783 1.06843 0.89227 1.23618 1.03997 0.94656 1.06605 1.21076 1.04809 0.99567 0.91606 1.17563 1.02147 0.84435 0.87378 1.91516 1.93665 1.55984 1.70287 1.20941 1.03138 0.90765 1.01140 1.20944 1.00720 1.00381 0.90842 1.17089 1.03854 0.82937 0.87861 1.91560 1.93411 1.54688 1.70568 0.92789 0.91897 0.92168 0.91106 0.89535 0.93924 0.95603 0.92532 0.83921 0.83251 0.83501 0.83743 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.10 1.54 5.82 -4.04 -0.02 1.52 16 3 N -0.58 -11.58 2.46 -178.57 -0.44 -12.02 16 4 C 0.22 5.16 4.23 -5.19 -0.02 5.13 16 5 C -0.53 -15.04 9.94 -34.44 -0.34 -15.39 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 9 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.26 -6.29 6.54 56.52 0.37 -5.93 16 13 C 0.53 10.42 7.42 -15.09 -0.11 10.31 16 14 O -0.52 -12.07 12.91 5.09 0.07 -12.01 16 15 C -0.18 -2.63 9.10 -39.53 -0.36 -2.99 16 16 C -0.15 -2.01 9.56 29.62 0.28 -1.73 16 17 S 0.20 3.17 18.42 -107.50 -1.98 1.19 16 18 C -0.18 -2.28 6.09 -39.03 -0.24 -2.52 16 19 C -0.15 -1.61 9.19 -39.32 -0.36 -1.97 16 20 C 0.11 1.07 7.29 -39.45 -0.29 0.78 16 21 F -0.14 -1.40 17.26 2.25 0.04 -1.36 16 22 C -0.14 -1.19 10.02 -39.47 -0.40 -1.58 16 23 C -0.11 -1.00 10.02 -39.55 -0.40 -1.40 16 24 C 0.11 1.33 7.28 -39.24 -0.29 1.04 16 25 F -0.12 -1.73 16.75 2.25 0.04 -1.69 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.87 6.07 -51.93 -0.32 0.55 16 30 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.04 1.11 6.48 -51.93 -0.34 0.77 16 32 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.14 1.57 6.07 -52.49 -0.32 1.25 16 35 H 0.15 1.41 5.24 -52.48 -0.28 1.13 16 36 H 0.15 1.37 5.05 -52.48 -0.27 1.10 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -33.63 343.03 -7.28 -40.91 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.02 Total: -1.73 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.26 Total: -8.42 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.33 Total: -38.81 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.98 Total: 1.19 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.63 -7.28 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493528346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.674 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds