Wall clock time and date at job start Sat Apr 11 2020 01:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47118 * 2 1 4 4 C 1.46505 * 120.00014 * 89.99439 * 3 2 1 5 5 C 1.50708 * 109.46536 * 90.00402 * 4 3 2 6 6 H 1.07997 * 120.00013 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99601 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99770 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00244 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47204 * 89.99768 * 9 7 5 11 11 H 1.48494 * 109.47270 * 210.00026 * 9 7 5 12 12 H 1.48502 * 109.47052 * 329.99882 * 9 7 5 13 13 C 1.34779 * 120.00189 * 269.72834 * 3 2 1 14 14 O 1.21807 * 120.00193 * 179.97438 * 13 3 2 15 15 C 1.41302 * 119.99895 * 359.97438 * 13 3 2 16 16 C 1.35102 * 119.99946 * 180.02562 * 15 13 3 17 17 S 1.76206 * 120.00210 * 0.02562 * 16 15 13 18 18 C 1.76197 * 99.99944 * 173.94790 * 17 16 15 19 19 C 1.38858 * 120.07589 * 352.32056 * 18 17 16 20 20 C 1.38316 * 119.93080 * 179.97438 * 19 18 17 21 21 F 1.35097 * 119.97219 * 179.97438 * 20 19 18 22 22 C 1.38508 * 120.06183 * 0.02562 * 20 19 18 23 23 C 1.38272 * 120.14413 * 359.95848 * 22 20 19 24 24 C 1.38280 * 120.07646 * 359.78217 * 23 22 20 25 25 F 1.35095 * 120.03506 * 180.25805 * 24 23 22 26 26 H 1.09000 * 109.46865 * 60.00142 * 1 2 3 27 27 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46950 * 299.99713 * 1 2 3 29 29 H 1.09005 * 109.47316 * 240.00475 * 2 1 3 30 30 H 1.09000 * 109.46865 * 119.99858 * 2 1 3 31 31 H 1.08999 * 109.47327 * 210.00111 * 4 3 2 32 32 H 1.08992 * 109.47135 * 330.00637 * 4 3 2 33 33 H 0.96995 * 119.99940 * 179.97438 * 8 7 5 34 34 H 1.07999 * 119.99700 * 0.02562 * 15 13 3 35 35 H 1.08005 * 120.00055 * 179.97438 * 16 15 13 36 36 H 1.08008 * 120.03291 * 359.95192 * 19 18 17 37 37 H 1.08001 * 119.92795 * 179.97438 * 22 20 19 38 38 H 1.08004 * 119.96473 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 1.2688 5 6 3.6858 1.8351 1.7038 6 1 4.3429 1.2310 1.0958 7 6 4.1491 2.3897 2.8780 8 7 5.3910 2.1827 3.2579 9 14 3.0123 3.4340 3.9300 10 1 2.3076 2.5670 4.9081 11 1 3.8092 4.4544 4.6571 12 1 2.0164 4.1108 3.0609 13 6 2.2482 2.0148 -1.1672 14 8 2.6538 3.1633 -1.1672 15 6 2.0187 1.3466 -2.3909 16 6 2.2496 1.9814 -3.5609 17 16 2.8376 3.6425 -3.5609 18 6 3.1203 3.8670 -5.2855 19 6 3.0125 2.7892 -6.1544 20 6 3.2345 2.9690 -7.5078 21 9 3.1303 1.9209 -8.3538 22 6 3.5645 4.2223 -7.9963 23 6 3.6722 5.2975 -7.1336 24 6 3.4463 5.1256 -5.7803 25 9 3.5467 6.1778 -4.9389 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.0955 3.1411 1.1384 32 1 1.5817 1.6878 2.0283 33 1 5.7170 2.5732 4.0838 34 1 1.6587 0.3283 -2.3908 35 1 2.0746 1.4706 -4.4962 36 1 2.7559 1.8115 -5.7738 37 1 3.7377 4.3601 -9.0534 38 1 3.9293 6.2737 -7.5178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493528346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:52 Heat of formation + Delta-G solvation = -79.951470 kcal Electronic energy + Delta-G solvation = -24384.404247 eV Core-core repulsion = 20375.793156 eV Total energy + Delta-G solvation = -4008.611091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.03319 -50.01189 -41.05877 -39.69453 -37.15836 -34.98411 -34.15854 -32.58261 -31.77091 -30.97938 -29.74309 -26.03040 -24.68038 -24.37647 -24.04809 -22.61739 -20.19083 -19.19027 -19.12638 -18.71750 -18.50898 -18.16087 -17.44641 -17.00287 -16.73740 -16.44063 -16.37109 -15.85976 -15.79251 -15.44295 -15.19768 -14.75485 -14.54700 -14.33757 -14.27474 -13.77276 -13.69304 -13.55255 -13.50534 -13.32727 -13.19184 -12.61314 -12.37764 -12.16975 -12.08411 -12.06924 -11.90114 -11.75855 -11.65740 -10.82436 -10.69841 -10.29491 -9.84338 -9.48354 -8.45744 -8.34192 -6.39126 -0.39767 -0.14895 0.14519 0.41152 1.23586 1.30665 1.35842 1.46308 2.20289 2.30563 2.31315 2.44302 2.99978 3.04946 3.11552 3.39677 3.71442 3.87028 4.01604 4.09218 4.26120 4.38948 4.41429 4.51596 4.68380 4.70365 4.77094 4.81611 4.85488 4.90131 4.97304 5.00195 5.02370 5.04251 5.40545 5.47179 5.64289 5.64962 6.23225 6.61994 6.67372 7.19527 7.34305 8.82746 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.016515 B = 0.003115 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.030722 B = 8986.174432 C =10036.953018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.534 4.534 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.251 1.251 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.514 3.486 14 O -0.569 6.569 15 C -0.194 4.194 16 C -0.119 4.119 17 S 0.112 5.888 18 C -0.183 4.183 19 C -0.147 4.147 20 C 0.102 3.898 21 F -0.134 7.134 22 C -0.120 4.120 23 C -0.099 4.099 24 C 0.083 3.917 25 F -0.141 7.141 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.185 0.815 35 H 0.193 0.807 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 -1.672 -23.451 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.026 4.026 3 N -0.322 5.322 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.175 1.175 11 H -0.208 1.208 12 H -0.181 1.181 13 C 0.307 3.693 14 O -0.455 6.455 15 C -0.227 4.227 16 C -0.253 4.253 17 S 0.369 5.631 18 C -0.295 4.295 19 C -0.170 4.170 20 C 0.081 3.919 21 F -0.113 7.113 22 C -0.141 4.141 23 C -0.119 4.119 24 C 0.059 3.941 25 F -0.120 7.120 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.202 0.798 35 H 0.210 0.790 36 H 0.179 0.821 37 H 0.198 0.802 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.230 -0.239 -22.297 24.533 hybrid contribution 0.103 -0.467 0.087 0.487 sum -10.127 -0.707 -22.210 24.420 Atomic orbital electron populations 1.22165 0.93843 1.03697 1.02127 1.21858 0.95681 0.80944 1.04119 1.47907 1.63281 1.15238 1.05757 1.19279 0.94672 0.93136 0.82539 1.21549 0.97064 1.32039 1.06633 0.95341 1.25836 0.96713 0.97130 0.98969 1.70048 1.17458 1.46584 1.24450 0.85728 0.79168 0.79142 0.79048 1.17469 1.20788 1.18065 1.17851 0.78766 0.86551 0.86149 1.90584 1.48767 1.20227 1.85933 1.21949 1.07775 1.03196 0.89793 1.26673 0.98085 0.97879 1.02702 1.87691 1.72127 1.10288 0.93009 1.23273 1.06203 0.95762 1.04276 1.21208 1.04302 0.99523 0.91941 1.17670 1.02097 0.85087 0.87020 1.91530 1.93637 1.56038 1.70055 1.21364 1.00421 0.89562 1.02738 1.21274 0.99263 1.02091 0.89232 1.17552 1.05017 0.82488 0.89069 1.91515 1.93705 1.55394 1.71383 0.91931 0.88599 0.93638 0.88112 0.90943 0.96223 0.93608 0.92288 0.79782 0.79043 0.82056 0.80188 0.80438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.24 71.98 0.74 -2.69 16 2 C 0.10 2.72 5.82 86.38 0.50 3.23 16 3 N -0.59 -23.96 2.46 -837.03 -2.06 -26.01 16 4 C 0.23 11.14 4.23 85.63 0.36 11.50 16 5 C -0.53 -31.81 9.94 25.60 0.25 -31.56 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 9 Si 0.95 45.08 27.47 68.60 1.88 46.96 16 10 H -0.25 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 13 C 0.51 20.76 7.42 84.99 0.63 21.39 16 14 O -0.57 -28.02 12.91 -4.69 -0.06 -28.08 16 15 C -0.19 -5.38 9.10 22.30 0.20 -5.17 16 16 C -0.12 -2.96 9.56 67.10 0.64 -2.32 16 17 S 0.11 3.67 18.42 -56.49 -1.04 2.63 16 18 C -0.18 -4.63 6.09 22.63 0.14 -4.49 16 19 C -0.15 -2.88 9.19 22.44 0.21 -2.68 16 20 C 0.10 1.74 7.29 22.35 0.16 1.90 16 21 F -0.13 -2.29 17.26 44.97 0.78 -1.51 16 22 C -0.12 -1.59 10.02 22.34 0.22 -1.37 16 23 C -0.10 -1.55 10.02 22.29 0.22 -1.33 16 24 C 0.08 2.00 7.28 22.49 0.16 2.17 16 25 F -0.14 -4.08 16.75 44.97 0.75 -3.32 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 2.22 6.07 -2.38 -0.01 2.20 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.02 1.06 6.48 -2.39 -0.02 1.04 16 32 H 0.05 2.06 7.50 -2.39 -0.02 2.04 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.19 3.40 6.07 -2.91 -0.02 3.38 16 35 H 0.19 2.95 5.24 -2.91 -0.02 2.93 16 36 H 0.16 2.51 5.05 -2.91 -0.01 2.49 16 37 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -80.40 343.03 6.52 -73.88 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.05 Total: 5.87 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.91 Total: -10.25 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.76 Total: -86.17 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.53 Total: -4.83 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.04 Total: 2.63 kcal Total: -80.40 6.52 -73.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493528346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.071 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds