Wall clock time and date at job start Sat Apr 11 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99803 * 2 1 4 4 H 1.09003 * 109.46598 * 179.29348 * 3 2 1 5 5 C 1.50696 * 109.47117 * 299.29540 * 3 2 1 6 6 O 1.20824 * 120.00387 * 0.02562 * 5 3 2 7 7 O 1.34234 * 119.99464 * 180.02562 * 5 3 2 8 8 C 1.50700 * 109.47164 * 59.30207 * 3 2 1 9 9 C 1.38232 * 120.00205 * 122.05270 * 8 3 2 10 10 C 1.38235 * 119.99867 * 179.80881 * 9 8 3 11 11 C 1.38230 * 120.00031 * 0.39680 * 10 9 8 12 12 C 1.38238 * 120.00065 * 359.85593 * 11 10 9 13 13 C 1.38235 * 120.00232 * 359.95912 * 12 11 10 14 14 S 1.65600 * 119.99730 * 180.02562 * 2 1 3 15 15 O 1.42096 * 104.27535 * 153.92964 * 14 2 1 16 16 O 1.42099 * 104.27928 * 26.07069 * 14 2 1 17 17 C 1.81400 * 104.44878 * 270.00113 * 14 2 1 18 18 C 1.52999 * 109.47179 * 180.02562 * 17 14 2 19 19 C 1.50703 * 109.47228 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99502 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99988 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46906 * 89.99664 * 23 21 19 25 25 H 1.48497 * 109.47071 * 209.99512 * 23 21 19 26 26 H 1.48491 * 109.47077 * 329.99725 * 23 21 19 27 27 H 1.08994 * 109.47168 * 274.73566 * 1 2 3 28 28 H 1.08998 * 109.46744 * 34.74125 * 1 2 3 29 29 H 1.09005 * 109.46877 * 154.73431 * 1 2 3 30 30 H 0.96705 * 116.99348 * 179.97438 * 7 5 3 31 31 H 1.08002 * 120.00075 * 359.97438 * 9 8 3 32 32 H 1.08000 * 119.99831 * 180.23129 * 10 9 8 33 33 H 1.08001 * 120.00389 * 179.83788 * 11 10 9 34 34 H 1.08005 * 120.00158 * 179.97438 * 12 11 10 35 35 H 1.07991 * 120.00296 * 179.97438 * 13 12 11 36 36 H 1.08998 * 109.47353 * 300.00173 * 17 14 2 37 37 H 1.09002 * 109.47385 * 60.00241 * 17 14 2 38 38 H 1.08995 * 109.47194 * 299.99749 * 18 17 14 39 39 H 1.08999 * 109.47223 * 60.00192 * 18 17 14 40 40 H 0.97002 * 119.99894 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2691 1.0695 0.0127 5 6 1.8466 2.0514 -1.2391 6 8 1.0645 1.5963 -2.0398 7 8 2.4029 3.2541 -1.4531 8 6 1.8205 2.0664 1.2217 9 6 2.7962 2.4608 2.1179 10 6 2.4509 3.1959 3.2365 11 6 1.1287 3.5296 3.4631 12 6 0.1523 3.1308 2.5696 13 6 0.4981 2.3989 1.4490 14 16 2.2930 -1.4342 -0.0006 15 8 3.5395 -1.1189 -0.6057 16 8 1.3970 -2.3559 -0.6063 17 6 2.5193 -1.8270 1.7558 18 6 3.2818 -3.1467 1.8892 19 6 3.4693 -3.4733 3.3484 20 1 3.0834 -2.8061 4.1049 21 6 4.1341 -4.6233 3.7175 22 7 4.6044 -5.4355 2.7962 23 14 4.3671 -5.0279 5.5263 24 1 3.2167 -5.8359 6.0049 25 1 5.6226 -5.8009 5.7029 26 1 4.4470 -3.7684 6.3088 27 1 -0.3633 0.0848 1.0241 28 1 -0.3633 0.8445 -0.5856 29 1 -0.3633 -0.9294 -0.4386 30 1 2.1473 3.7182 -2.2621 31 1 3.8288 2.1969 1.9428 32 1 3.2137 3.5072 3.9348 33 1 0.8585 4.1017 4.3384 34 1 -0.8808 3.3911 2.7468 35 1 -0.2648 2.0870 0.7511 36 1 3.0865 -1.0298 2.2363 37 1 1.5451 -1.9198 2.2358 38 1 2.7149 -3.9440 1.4087 39 1 4.2561 -3.0535 1.4093 40 1 5.0718 -6.2448 3.0559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548565696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:59 Heat of formation + Delta-G solvation = -127.662112 kcal Electronic energy + Delta-G solvation = -26460.812337 eV Core-core repulsion = 22561.219872 eV Total energy + Delta-G solvation = -3899.592464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88016 -39.23472 -36.80169 -36.75826 -35.79678 -35.49117 -33.92173 -31.85560 -31.19198 -31.06744 -28.43610 -25.82800 -25.37513 -22.81787 -22.70765 -21.73035 -21.05601 -18.72005 -18.31403 -17.68858 -17.36278 -16.90152 -16.50148 -16.10449 -15.76538 -15.39741 -15.03878 -14.96253 -14.56555 -14.31760 -13.94820 -13.66903 -13.45177 -13.03425 -12.83207 -12.75499 -12.53568 -12.45810 -11.90124 -11.79283 -11.73258 -11.68108 -11.49870 -11.27345 -11.09914 -11.02014 -10.99226 -10.83946 -10.45287 -10.40884 -9.80640 -9.41962 -9.10705 -9.03680 -8.94505 -8.52044 -6.14065 -4.19811 0.56767 1.05551 1.21486 1.99744 2.62201 2.98621 3.25143 3.31503 3.34039 3.63690 4.15746 4.29873 4.37364 4.46862 4.52812 4.75388 4.79469 4.92773 4.98905 5.10223 5.21240 5.28892 5.39775 5.52820 5.56237 5.65146 5.69528 5.78650 5.88342 5.90402 6.23378 6.28605 6.29828 6.32312 6.39039 6.44307 6.76421 7.26872 7.32380 7.70052 7.78874 8.14955 8.83555 9.45136 10.96971 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.004290 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.179803 B = 6524.777653 C = 7844.060091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.986 5.986 3 C 0.204 3.796 4 H 0.145 0.855 5 C 0.479 3.521 6 O -0.498 6.498 7 O -0.509 6.509 8 C -0.097 4.097 9 C -0.094 4.094 10 C -0.116 4.116 11 C -0.111 4.111 12 C -0.120 4.120 13 C -0.108 4.108 14 S 2.584 3.416 15 O -0.963 6.963 16 O -0.953 6.953 17 C -0.582 4.582 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.410 0.590 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 20.814 -1.963 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.820 5.820 3 C 0.095 3.905 4 H 0.163 0.837 5 C 0.318 3.682 6 O -0.385 6.385 7 O -0.320 6.320 8 C -0.099 4.099 9 C -0.112 4.112 10 C -0.134 4.134 11 C -0.130 4.130 12 C -0.138 4.138 13 C -0.126 4.126 14 S 2.684 3.316 15 O -0.953 6.953 16 O -0.943 6.943 17 C -0.716 4.716 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.268 0.732 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.281 19.849 -2.713 21.316 hybrid contribution -0.168 0.195 1.040 1.071 sum -7.448 20.045 -1.674 21.449 Atomic orbital electron populations 1.21832 0.78270 1.05111 1.01601 1.57688 1.15753 1.18888 1.89657 1.19001 0.99637 0.83642 0.88203 0.83727 1.23628 0.77621 0.79537 0.87432 1.90713 1.33020 1.68843 1.45904 1.84546 1.67517 1.32037 1.47946 1.19601 0.94567 0.99910 0.95867 1.21116 0.99293 0.97073 0.93749 1.21157 0.96555 0.98381 0.97347 1.21234 0.93208 0.99439 0.99073 1.21120 0.99556 0.98492 0.94667 1.21295 0.95625 0.97462 0.98226 1.06060 0.73551 0.72383 0.79605 1.93530 1.43774 1.82608 1.75394 1.93543 1.64599 1.61020 1.75145 1.30451 1.10556 1.10767 1.19797 1.18989 0.94948 0.87048 1.00135 1.20979 1.37120 1.07114 0.90665 0.91986 1.25059 0.95261 0.96082 0.98005 1.69955 1.37245 1.12687 1.32946 0.86470 0.77750 0.78525 0.84548 1.20453 1.20997 1.19743 0.92401 0.90312 0.88998 0.73159 0.85080 0.85515 0.85952 0.85875 0.85391 0.86045 0.85929 0.94805 0.94782 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 8.19 59.85 0.49 1.45 16 2 N -0.99 -14.32 2.76 -117.10 -0.32 -14.64 16 3 C 0.20 2.63 2.80 -70.24 -0.20 2.43 16 4 H 0.15 1.81 6.62 -51.93 -0.34 1.46 16 5 C 0.48 6.04 7.09 36.00 0.26 6.29 16 6 O -0.50 -7.47 15.24 -18.75 -0.29 -7.76 16 7 O -0.51 -4.79 13.34 -39.27 -0.52 -5.32 16 8 C -0.10 -1.09 4.89 -104.62 -0.51 -1.60 16 9 C -0.09 -0.97 9.67 -39.58 -0.38 -1.35 16 10 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 11 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 12 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 13 C -0.11 -1.10 7.89 -39.58 -0.31 -1.41 16 14 S 2.58 47.55 5.41 -107.50 -0.58 46.97 16 15 O -0.96 -19.73 16.58 -57.54 -0.95 -20.69 16 16 O -0.95 -20.15 16.53 -57.54 -0.95 -21.10 16 17 C -0.58 -11.02 6.12 37.16 0.23 -10.79 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 23 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.06 0.59 7.13 -51.93 -0.37 0.22 16 28 H 0.08 0.92 5.13 -51.93 -0.27 0.65 16 29 H 0.09 1.23 6.82 -51.93 -0.35 0.88 16 30 H 0.41 2.03 9.10 45.56 0.41 2.44 16 31 H 0.13 1.17 7.95 -52.49 -0.42 0.76 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.13 1.21 5.20 -52.49 -0.27 0.93 16 36 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -36.42 351.08 -8.90 -45.32 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.11 Total: 3.13 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.17 Total: -21.63 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.41 Total: -40.16 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -2.71 Total: -54.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 47.55 SS G_CDS: -0.58 Total: 46.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.42 -8.90 -45.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548565696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.347 kcal (2) G-P(sol) polarization free energy of solvation -36.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds