Wall clock time and date at job start Sat Apr 11 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99803 * 2 1 4 4 H 1.09003 * 109.46598 * 179.29348 * 3 2 1 5 5 C 1.50696 * 109.47117 * 299.29540 * 3 2 1 6 6 O 1.20824 * 120.00387 * 0.02562 * 5 3 2 7 7 O 1.34234 * 119.99464 * 180.02562 * 5 3 2 8 8 C 1.50700 * 109.47164 * 59.30207 * 3 2 1 9 9 C 1.38232 * 120.00205 * 122.05270 * 8 3 2 10 10 C 1.38235 * 119.99867 * 179.80881 * 9 8 3 11 11 C 1.38230 * 120.00031 * 0.39680 * 10 9 8 12 12 C 1.38238 * 120.00065 * 359.85593 * 11 10 9 13 13 C 1.38235 * 120.00232 * 359.95912 * 12 11 10 14 14 S 1.65600 * 119.99730 * 180.02562 * 2 1 3 15 15 O 1.42096 * 104.27535 * 153.92964 * 14 2 1 16 16 O 1.42099 * 104.27928 * 26.07069 * 14 2 1 17 17 C 1.81400 * 104.44878 * 270.00113 * 14 2 1 18 18 C 1.52999 * 109.47179 * 180.02562 * 17 14 2 19 19 C 1.50703 * 109.47228 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99502 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99988 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46906 * 89.99664 * 23 21 19 25 25 H 1.48497 * 109.47071 * 209.99512 * 23 21 19 26 26 H 1.48491 * 109.47077 * 329.99725 * 23 21 19 27 27 H 1.08994 * 109.47168 * 274.73566 * 1 2 3 28 28 H 1.08998 * 109.46744 * 34.74125 * 1 2 3 29 29 H 1.09005 * 109.46877 * 154.73431 * 1 2 3 30 30 H 0.96705 * 116.99348 * 179.97438 * 7 5 3 31 31 H 1.08002 * 120.00075 * 359.97438 * 9 8 3 32 32 H 1.08000 * 119.99831 * 180.23129 * 10 9 8 33 33 H 1.08001 * 120.00389 * 179.83788 * 11 10 9 34 34 H 1.08005 * 120.00158 * 179.97438 * 12 11 10 35 35 H 1.07991 * 120.00296 * 179.97438 * 13 12 11 36 36 H 1.08998 * 109.47353 * 300.00173 * 17 14 2 37 37 H 1.09002 * 109.47385 * 60.00241 * 17 14 2 38 38 H 1.08995 * 109.47194 * 299.99749 * 18 17 14 39 39 H 1.08999 * 109.47223 * 60.00192 * 18 17 14 40 40 H 0.97002 * 119.99894 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2691 1.0695 0.0127 5 6 1.8466 2.0514 -1.2391 6 8 1.0645 1.5963 -2.0398 7 8 2.4029 3.2541 -1.4531 8 6 1.8205 2.0664 1.2217 9 6 2.7962 2.4608 2.1179 10 6 2.4509 3.1959 3.2365 11 6 1.1287 3.5296 3.4631 12 6 0.1523 3.1308 2.5696 13 6 0.4981 2.3989 1.4490 14 16 2.2930 -1.4342 -0.0006 15 8 3.5395 -1.1189 -0.6057 16 8 1.3970 -2.3559 -0.6063 17 6 2.5193 -1.8270 1.7558 18 6 3.2818 -3.1467 1.8892 19 6 3.4693 -3.4733 3.3484 20 1 3.0834 -2.8061 4.1049 21 6 4.1341 -4.6233 3.7175 22 7 4.6044 -5.4355 2.7962 23 14 4.3671 -5.0279 5.5263 24 1 3.2167 -5.8359 6.0049 25 1 5.6226 -5.8009 5.7029 26 1 4.4470 -3.7684 6.3088 27 1 -0.3633 0.0848 1.0241 28 1 -0.3633 0.8445 -0.5856 29 1 -0.3633 -0.9294 -0.4386 30 1 2.1473 3.7182 -2.2621 31 1 3.8288 2.1969 1.9428 32 1 3.2137 3.5072 3.9348 33 1 0.8585 4.1017 4.3384 34 1 -0.8808 3.3911 2.7468 35 1 -0.2648 2.0870 0.7511 36 1 3.0865 -1.0298 2.2363 37 1 1.5451 -1.9198 2.2358 38 1 2.7149 -3.9440 1.4087 39 1 4.2561 -3.0535 1.4093 40 1 5.0718 -6.2448 3.0559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548565696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:50:58 Heat of formation + Delta-G solvation = -153.973461 kcal Electronic energy + Delta-G solvation = -26461.953282 eV Core-core repulsion = 22561.219872 eV Total energy + Delta-G solvation = -3900.733410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81101 -40.00511 -38.36209 -37.72099 -37.13572 -36.72155 -35.90115 -33.14293 -32.69991 -31.77312 -29.32366 -27.64470 -26.58927 -23.66337 -23.53842 -23.40334 -22.04215 -20.02995 -19.42453 -19.05136 -18.39437 -18.26661 -17.82032 -17.20933 -16.91968 -16.71843 -16.50998 -16.20660 -15.77214 -15.26225 -15.06876 -14.92669 -14.46536 -14.38689 -13.95824 -13.76851 -13.69774 -13.65523 -13.54236 -13.29675 -13.12912 -12.92944 -12.82810 -12.78526 -12.60302 -12.26845 -12.18463 -12.08017 -11.87301 -11.81020 -11.70194 -11.17347 -10.63544 -10.23459 -9.78229 -9.75474 -8.24779 -6.38761 -0.90308 0.30997 0.52474 1.02965 1.42738 1.44272 1.44631 1.55531 2.02349 2.39352 2.74333 2.86360 3.08221 3.09704 3.34913 3.57148 3.79477 4.03157 4.08567 4.10008 4.21760 4.24770 4.34444 4.59385 4.64363 4.67006 4.73139 4.81966 4.89394 5.02837 5.18311 5.21134 5.26619 5.30701 5.48858 5.56925 5.59719 5.65480 5.69239 6.06291 6.09811 6.74645 6.88497 7.31597 8.87590 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.004290 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.179803 B = 6524.777653 C = 7844.060091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.980 5.980 3 C 0.196 3.804 4 H 0.144 0.856 5 C 0.484 3.516 6 O -0.528 6.528 7 O -0.499 6.499 8 C -0.109 4.109 9 C -0.108 4.108 10 C -0.123 4.123 11 C -0.112 4.112 12 C -0.123 4.123 13 C -0.117 4.117 14 S 2.605 3.395 15 O -0.989 6.989 16 O -0.985 6.985 17 C -0.574 4.574 18 C 0.021 3.979 19 C -0.535 4.535 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.256 1.256 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.430 0.570 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.006 0.994 39 H 0.009 0.991 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 23.154 0.263 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.816 5.816 3 C 0.087 3.913 4 H 0.161 0.839 5 C 0.325 3.675 6 O -0.417 6.417 7 O -0.312 6.312 8 C -0.111 4.111 9 C -0.126 4.126 10 C -0.140 4.140 11 C -0.130 4.130 12 C -0.140 4.140 13 C -0.135 4.135 14 S 2.705 3.295 15 O -0.979 6.979 16 O -0.976 6.976 17 C -0.708 4.708 18 C -0.018 4.018 19 C -0.574 4.574 20 H 0.095 0.905 21 C -0.201 4.201 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.180 1.180 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.293 0.707 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.024 0.976 39 H 0.027 0.973 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.161 22.222 -0.491 23.678 hybrid contribution 0.092 -0.382 0.301 0.495 sum -8.069 21.840 -0.190 23.283 Atomic orbital electron populations 1.22031 0.76847 1.04897 1.03437 1.57256 1.16461 1.18335 1.89547 1.19190 0.99383 0.83073 0.89604 0.83871 1.23511 0.77088 0.80082 0.86860 1.90706 1.34504 1.69736 1.46786 1.84492 1.66734 1.30769 1.49246 1.19481 0.95381 1.00764 0.95434 1.21311 0.99581 0.97590 0.94153 1.21442 0.97506 0.97907 0.97181 1.21588 0.92883 0.98884 0.99618 1.21418 1.00859 0.97728 0.94028 1.21421 0.95264 0.97905 0.98929 1.05126 0.72807 0.72695 0.78912 1.93486 1.45347 1.83235 1.75838 1.93496 1.65327 1.62994 1.75736 1.30295 1.11151 1.08147 1.21178 1.18845 0.94214 0.89583 0.99179 1.21473 1.36721 1.07427 0.91824 0.90479 1.26093 0.94899 0.96011 1.03056 1.70104 1.38404 1.13379 1.35565 0.85325 0.77663 0.78829 0.78526 1.19711 1.20924 1.17973 0.89715 0.89277 0.90274 0.70740 0.84536 0.83750 0.83596 0.83711 0.85040 0.83620 0.83778 0.97594 0.97277 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.72 8.19 127.77 1.05 2.76 16 2 N -0.98 -27.87 2.76 -524.40 -1.45 -29.31 16 3 C 0.20 4.86 2.80 43.50 0.12 4.98 16 4 H 0.14 3.54 6.62 -2.39 -0.02 3.52 16 5 C 0.48 11.74 7.09 71.23 0.50 12.25 16 6 O -0.53 -15.54 15.24 21.97 0.33 -15.20 16 7 O -0.50 -8.58 13.34 -51.46 -0.69 -9.26 16 8 C -0.11 -2.23 4.89 -19.86 -0.10 -2.33 16 9 C -0.11 -2.01 9.67 22.27 0.22 -1.79 16 10 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 11 C -0.11 -1.55 10.05 22.27 0.22 -1.33 16 12 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 13 C -0.12 -2.10 7.89 22.27 0.18 -1.92 16 14 S 2.60 97.26 5.41 -56.49 -0.31 96.95 16 15 O -0.99 -41.56 16.58 -127.65 -2.12 -43.68 16 16 O -0.99 -42.86 16.53 -127.65 -2.11 -44.97 16 17 C -0.57 -21.58 6.12 71.98 0.44 -21.14 16 18 C 0.02 1.08 4.98 29.85 0.15 1.23 16 19 C -0.54 -29.16 9.11 25.60 0.23 -28.93 16 20 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 21 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 22 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 23 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 H 0.08 1.56 7.13 -2.39 -0.02 1.54 16 28 H 0.09 1.97 5.13 -2.39 -0.01 1.96 16 29 H 0.08 2.11 6.82 -2.38 -0.02 2.09 16 30 H 0.43 3.43 9.10 -74.05 -0.67 2.75 16 31 H 0.14 2.26 7.95 -2.91 -0.02 2.24 16 32 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.13 2.19 5.20 -2.92 -0.02 2.17 16 36 H 0.15 4.71 8.14 -2.39 -0.02 4.69 16 37 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -79.62 351.08 0.31 -79.31 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.41 Total: 16.83 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.92 Total: -39.12 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -1.16 Total: -85.50 kcal Atomic # 8 Polarization: -108.53 SS G_CDS: -4.58 Total: -113.11 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 97.26 SS G_CDS: -0.31 Total: 96.95 kcal Total: -79.62 0.31 -79.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548565696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.664 kcal (2) G-P(sol) polarization free energy of solvation -79.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds