Wall clock time and date at job start Sat Apr 11 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47069 * 2 1 4 4 N 1.46504 * 109.46861 * 120.00171 * 2 1 3 5 5 C 1.46506 * 119.99738 * 299.99714 * 4 2 1 6 6 C 1.50699 * 109.46928 * 85.00452 * 5 4 2 7 7 H 1.08003 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99749 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00236 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47160 * 89.99730 * 10 8 6 12 12 H 1.48503 * 109.47061 * 209.99752 * 10 8 6 13 13 H 1.48500 * 109.46598 * 329.99398 * 10 8 6 14 14 S 1.65593 * 120.00121 * 120.00251 * 4 2 1 15 15 O 1.42098 * 106.40615 * 23.53545 * 14 4 2 16 16 O 1.42104 * 106.40292 * 156.45650 * 14 4 2 17 17 C 1.76204 * 107.21858 * 269.99723 * 14 4 2 18 18 C 1.38281 * 119.98653 * 114.72509 * 17 14 4 19 19 C 1.38210 * 120.14417 * 179.68312 * 18 17 14 20 20 C 1.38286 * 120.13966 * 0.64774 * 19 18 17 21 21 C 1.38501 * 120.02939 * 359.63394 * 20 19 18 22 22 C 1.38500 * 119.98240 * 294.99807 * 17 14 4 23 23 O 1.36504 * 131.54657 * 0.02562 * 22 17 14 24 24 C 1.43988 * 105.48863 * 162.67975 * 23 22 17 25 25 O 1.36498 * 131.53970 * 180.02562 * 21 20 19 26 26 H 1.08999 * 109.47573 * 299.99684 * 1 2 3 27 27 H 1.08998 * 109.47255 * 60.00480 * 1 2 3 28 28 H 1.09003 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47307 * 239.99586 * 2 1 3 30 30 H 1.09000 * 109.47002 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47354 * 299.99992 * 3 2 1 32 32 H 1.08999 * 109.47093 * 60.00085 * 3 2 1 33 33 H 1.09004 * 109.47073 * 205.00280 * 5 4 2 34 34 H 1.09000 * 109.47212 * 325.00363 * 5 4 2 35 35 H 0.97001 * 119.99269 * 180.02562 * 9 8 6 36 36 H 1.08000 * 119.92322 * 0.02562 * 18 17 14 37 37 H 1.07992 * 119.93103 * 180.28482 * 19 18 17 38 38 H 1.08001 * 119.98297 * 179.66168 * 20 19 18 39 39 H 1.09006 * 110.56696 * 268.56025 * 24 23 22 40 40 H 1.08994 * 110.69650 * 145.75355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 0.3224 -0.7438 2.9312 7 1 -0.2131 -1.4031 2.2640 8 6 -0.2213 -0.4097 4.1533 9 7 -1.3927 -0.8926 4.5060 10 14 0.7051 0.7299 5.3077 11 1 0.3185 2.1366 5.0303 12 1 0.3673 0.3918 6.7137 13 1 2.1660 0.5672 5.0967 14 16 2.9703 -2.0370 1.0443 15 8 3.5794 -1.9554 -0.2369 16 8 3.7118 -2.1425 2.2520 17 6 1.8960 -3.4328 0.9964 18 6 1.8132 -4.2022 -0.1496 19 6 0.9765 -5.3016 -0.1885 20 6 0.2085 -5.6291 0.9139 21 6 0.2820 -4.8596 2.0631 22 6 1.1306 -3.7555 2.1047 23 8 1.0234 -3.1692 3.3327 24 6 -0.1981 -3.6809 3.8978 25 8 -0.3564 -4.9645 3.2650 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 2.4196 -0.5059 3.2466 34 1 1.6164 0.8986 2.5045 35 1 -1.7754 -0.6572 5.3657 36 1 2.4078 -3.9467 -1.0142 37 1 0.9180 -5.9028 -1.0837 38 1 -0.4485 -6.4855 0.8788 39 1 -1.0360 -3.0277 3.6539 40 1 -0.1047 -3.7951 4.9777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548979780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:51:04 Heat of formation + Delta-G solvation = -94.115524 kcal Electronic energy + Delta-G solvation = -28446.268847 eV Core-core repulsion = 24548.131072 eV Total energy + Delta-G solvation = -3898.137775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64051 -37.50398 -37.05523 -36.66332 -35.66631 -35.28639 -32.83969 -30.92095 -30.62420 -29.55856 -27.52401 -26.65213 -25.09005 -23.12376 -22.61569 -22.43953 -20.38099 -18.56326 -17.80075 -17.59953 -17.30469 -16.88377 -16.42709 -16.07421 -15.34221 -15.27897 -14.40568 -14.16134 -13.94309 -13.66245 -13.58925 -13.33961 -13.00878 -12.75808 -12.53600 -12.35114 -12.28541 -12.05106 -11.96313 -11.80328 -11.63172 -11.53220 -11.33971 -11.18823 -10.98949 -10.88376 -10.52506 -10.40347 -10.31323 -10.13852 -10.09918 -9.51899 -8.98384 -8.66845 -8.13621 -7.61069 -6.24593 -4.17148 0.90495 1.16346 1.47033 3.20227 3.23242 3.29722 3.37528 3.50170 3.78311 3.96731 4.25554 4.31169 4.73321 4.98580 5.09163 5.14808 5.27449 5.39755 5.42621 5.61387 5.63370 5.65267 5.68365 5.91333 6.09291 6.12003 6.16775 6.23167 6.35001 6.40313 6.41020 6.47885 6.49606 6.64256 6.68300 6.89555 7.02253 7.19008 7.41836 7.51146 7.58548 8.34998 8.75217 9.38067 10.86313 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.008814 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.212876 B = 3175.843254 C = 4621.971522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 C -0.156 4.156 4 N -0.972 5.972 5 C 0.209 3.791 6 C -0.504 4.504 7 H 0.081 0.919 8 C 0.073 3.927 9 N -0.905 5.905 10 Si 0.864 3.136 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.261 1.261 14 S 2.695 3.305 15 O -0.976 6.976 16 O -0.954 6.954 17 C -0.670 4.670 18 C -0.028 4.028 19 C -0.148 4.148 20 C -0.062 4.062 21 C 0.008 3.992 22 C 0.169 3.831 23 O -0.250 6.250 24 C 0.210 3.790 25 O -0.322 6.322 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -3.758 -7.986 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 C -0.216 4.216 4 N -0.810 5.810 5 C 0.085 3.915 6 C -0.543 4.543 7 H 0.099 0.901 8 C -0.128 4.128 9 N -0.546 5.546 10 Si 0.691 3.309 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.185 1.185 14 S 2.785 3.215 15 O -0.967 6.967 16 O -0.944 6.944 17 C -0.756 4.756 18 C -0.047 4.047 19 C -0.167 4.167 20 C -0.081 4.081 21 C -0.038 4.038 22 C 0.120 3.880 23 O -0.162 6.162 24 C 0.100 3.900 25 O -0.239 6.239 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.695 -3.779 -7.588 8.895 hybrid contribution -0.651 0.214 1.085 1.283 sum 2.044 -3.565 -6.503 7.692 Atomic orbital electron populations 1.22182 0.94531 1.02364 1.02363 1.20724 0.95225 0.93392 0.86464 1.22098 1.00984 0.96268 1.02201 1.57275 1.69218 1.41359 1.13188 1.19668 0.97592 0.95938 0.78257 1.21477 1.01699 1.28792 1.02320 0.90069 1.24711 0.94693 0.96060 0.97359 1.69723 1.16796 1.45540 1.22517 0.87001 0.81602 0.81503 0.80768 1.20279 1.21159 1.18518 1.01751 0.73841 0.72915 0.73026 1.93494 1.74243 1.86782 1.42139 1.93565 1.68228 1.86173 1.46422 1.29912 1.23278 1.24988 0.97448 1.20646 0.96090 0.92792 0.95171 1.20824 0.98623 0.99021 0.98271 1.20197 0.99443 0.99308 0.89148 1.19910 0.97718 0.97784 0.88375 1.19221 0.92372 0.90311 0.86144 1.87849 1.41434 1.62986 1.23976 1.26262 0.88085 0.78280 0.97420 1.87319 1.73354 1.36491 1.26760 0.89647 0.93487 0.92899 0.89673 0.92786 0.92111 0.91618 0.93077 0.94418 0.92434 0.83519 0.84485 0.84902 0.84949 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.21 37.16 0.30 -2.27 16 2 C 0.15 2.46 3.24 -67.93 -0.22 2.24 16 3 C -0.16 -2.29 9.16 37.15 0.34 -1.95 16 4 N -0.97 -19.02 2.73 -108.57 -0.30 -19.32 16 5 C 0.21 4.57 4.07 -5.19 -0.02 4.55 16 6 C -0.50 -11.85 4.42 -34.44 -0.15 -12.01 16 7 H 0.08 2.02 6.14 -52.48 -0.32 1.70 16 8 C 0.07 1.78 5.05 -17.82 -0.09 1.69 16 9 N -0.91 -22.82 12.15 55.43 0.67 -22.14 16 10 Si 0.86 19.59 27.47 -169.99 -4.67 14.92 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 14 S 2.69 54.07 5.62 -107.50 -0.60 53.47 16 15 O -0.98 -19.07 15.53 -57.17 -0.89 -19.96 16 16 O -0.95 -22.06 16.48 -57.17 -0.94 -23.01 16 17 C -0.67 -12.75 5.92 -39.47 -0.23 -12.98 16 18 C -0.03 -0.43 9.54 -39.58 -0.38 -0.81 16 19 C -0.15 -2.01 10.04 -39.57 -0.40 -2.41 16 20 C -0.06 -0.93 10.06 -39.47 -0.40 -1.33 16 21 C 0.01 0.14 7.15 -39.08 -0.28 -0.14 16 22 C 0.17 3.48 6.16 -39.08 -0.24 3.24 16 23 O -0.25 -5.59 8.25 -45.70 -0.38 -5.96 16 24 C 0.21 4.28 7.85 101.05 0.79 5.07 16 25 O -0.32 -6.27 11.40 -45.68 -0.52 -6.79 16 26 H 0.08 1.61 6.65 -51.93 -0.35 1.26 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.92 7.93 -51.93 -0.41 0.51 16 29 H 0.09 1.32 6.91 -51.93 -0.36 0.96 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.00 6.69 -51.93 -0.35 0.66 16 33 H 0.05 1.22 5.97 -51.93 -0.31 0.91 16 34 H 0.04 0.79 5.88 -51.93 -0.31 0.49 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.15 1.98 7.33 -52.49 -0.38 1.59 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.96 5.81 -51.93 -0.30 2.66 16 40 H 0.12 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -28.44 327.56 -8.45 -36.89 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.79 Total: 4.07 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -0.97 Total: -17.10 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.38 Total: -41.46 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -2.73 Total: -55.72 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.60 Total: 53.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.44 -8.45 -36.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548979780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.224 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds