Wall clock time and date at job start Sat Apr 11 2020 01:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47069 * 2 1 4 4 N 1.46504 * 109.46861 * 120.00171 * 2 1 3 5 5 C 1.46506 * 119.99738 * 299.99714 * 4 2 1 6 6 C 1.50699 * 109.46928 * 85.00452 * 5 4 2 7 7 H 1.08003 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99749 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00236 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47160 * 89.99730 * 10 8 6 12 12 H 1.48503 * 109.47061 * 209.99752 * 10 8 6 13 13 H 1.48500 * 109.46598 * 329.99398 * 10 8 6 14 14 S 1.65593 * 120.00121 * 120.00251 * 4 2 1 15 15 O 1.42098 * 106.40615 * 23.53545 * 14 4 2 16 16 O 1.42104 * 106.40292 * 156.45650 * 14 4 2 17 17 C 1.76204 * 107.21858 * 269.99723 * 14 4 2 18 18 C 1.38281 * 119.98653 * 114.72509 * 17 14 4 19 19 C 1.38210 * 120.14417 * 179.68312 * 18 17 14 20 20 C 1.38286 * 120.13966 * 0.64774 * 19 18 17 21 21 C 1.38501 * 120.02939 * 359.63394 * 20 19 18 22 22 C 1.38500 * 119.98240 * 294.99807 * 17 14 4 23 23 O 1.36504 * 131.54657 * 0.02562 * 22 17 14 24 24 C 1.43988 * 105.48863 * 162.67975 * 23 22 17 25 25 O 1.36498 * 131.53970 * 180.02562 * 21 20 19 26 26 H 1.08999 * 109.47573 * 299.99684 * 1 2 3 27 27 H 1.08998 * 109.47255 * 60.00480 * 1 2 3 28 28 H 1.09003 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47307 * 239.99586 * 2 1 3 30 30 H 1.09000 * 109.47002 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47354 * 299.99992 * 3 2 1 32 32 H 1.08999 * 109.47093 * 60.00085 * 3 2 1 33 33 H 1.09004 * 109.47073 * 205.00280 * 5 4 2 34 34 H 1.09000 * 109.47212 * 325.00363 * 5 4 2 35 35 H 0.97001 * 119.99269 * 180.02562 * 9 8 6 36 36 H 1.08000 * 119.92322 * 0.02562 * 18 17 14 37 37 H 1.07992 * 119.93103 * 180.28482 * 19 18 17 38 38 H 1.08001 * 119.98297 * 179.66168 * 20 19 18 39 39 H 1.09006 * 110.56696 * 268.56025 * 24 23 22 40 40 H 1.08994 * 110.69650 * 145.75355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 0.3224 -0.7438 2.9312 7 1 -0.2131 -1.4031 2.2640 8 6 -0.2213 -0.4097 4.1533 9 7 -1.3927 -0.8926 4.5060 10 14 0.7051 0.7299 5.3077 11 1 0.3185 2.1366 5.0303 12 1 0.3673 0.3918 6.7137 13 1 2.1660 0.5672 5.0967 14 16 2.9703 -2.0370 1.0443 15 8 3.5794 -1.9554 -0.2369 16 8 3.7118 -2.1425 2.2520 17 6 1.8960 -3.4328 0.9964 18 6 1.8132 -4.2022 -0.1496 19 6 0.9765 -5.3016 -0.1885 20 6 0.2085 -5.6291 0.9139 21 6 0.2820 -4.8596 2.0631 22 6 1.1306 -3.7555 2.1047 23 8 1.0234 -3.1692 3.3327 24 6 -0.1981 -3.6809 3.8978 25 8 -0.3564 -4.9645 3.2650 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 2.4196 -0.5059 3.2466 34 1 1.6164 0.8986 2.5045 35 1 -1.7754 -0.6572 5.3657 36 1 2.4078 -3.9467 -1.0142 37 1 0.9180 -5.9028 -1.0837 38 1 -0.4485 -6.4855 0.8788 39 1 -1.0360 -3.0277 3.6539 40 1 -0.1047 -3.7951 4.9777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548979780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:51:03 Heat of formation + Delta-G solvation = -113.641689 kcal Electronic energy + Delta-G solvation = -28447.115565 eV Core-core repulsion = 24548.131072 eV Total energy + Delta-G solvation = -3898.984493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.08572 -38.83839 -38.53926 -38.26486 -37.17283 -36.92914 -34.65418 -32.45178 -31.94517 -30.90918 -29.25634 -27.90495 -26.62538 -24.52598 -24.18557 -23.92708 -21.81366 -20.04507 -19.40632 -19.00896 -18.91330 -18.51317 -18.01409 -17.54395 -16.91099 -16.66736 -16.16203 -15.58059 -15.50084 -15.07817 -15.00063 -14.68683 -14.52716 -14.40051 -13.97744 -13.92829 -13.66780 -13.57845 -13.51319 -13.23867 -13.05832 -13.03120 -12.98963 -12.68369 -12.56469 -12.40513 -12.12239 -11.89448 -11.85813 -11.70080 -11.54514 -11.27425 -10.56973 -10.30472 -9.72006 -9.03440 -8.14186 -6.07177 -0.57384 -0.23818 0.15027 1.36299 1.43559 1.52398 1.83767 2.00509 2.42969 2.43643 2.51303 2.73287 3.19793 3.29408 3.61649 3.88094 3.92974 4.06042 4.20735 4.26460 4.27485 4.34917 4.40164 4.56354 4.68600 4.79951 4.89349 4.94151 4.95517 5.01003 5.10945 5.14675 5.16420 5.20065 5.30909 5.50188 5.54204 5.63117 5.73723 5.93406 6.14418 6.46140 6.84349 7.47801 8.97534 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.008814 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.212876 B = 3175.843254 C = 4621.971522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.138 3.862 3 C -0.155 4.155 4 N -0.975 5.975 5 C 0.216 3.784 6 C -0.483 4.483 7 H 0.063 0.937 8 C 0.037 3.963 9 N -0.927 5.927 10 Si 0.899 3.101 11 H -0.269 1.269 12 H -0.289 1.289 13 H -0.266 1.266 14 S 2.699 3.301 15 O -0.972 6.972 16 O -0.993 6.993 17 C -0.682 4.682 18 C -0.029 4.029 19 C -0.125 4.125 20 C -0.048 4.048 21 C -0.022 4.022 22 C 0.130 3.870 23 O -0.280 6.280 24 C 0.217 3.783 25 O -0.326 6.326 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.173 0.827 37 H 0.193 0.807 38 H 0.171 0.829 39 H 0.108 0.892 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 -4.609 -10.941 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.033 3.967 3 C -0.214 4.214 4 N -0.813 5.813 5 C 0.092 3.908 6 C -0.522 4.522 7 H 0.081 0.919 8 C -0.161 4.161 9 N -0.569 5.569 10 Si 0.726 3.274 11 H -0.194 1.194 12 H -0.215 1.215 13 H -0.191 1.191 14 S 2.792 3.208 15 O -0.963 6.963 16 O -0.984 6.984 17 C -0.771 4.771 18 C -0.049 4.049 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.067 4.067 22 C 0.082 3.918 23 O -0.193 6.193 24 C 0.107 3.893 25 O -0.243 6.243 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.190 0.810 37 H 0.210 0.790 38 H 0.188 0.812 39 H 0.126 0.874 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.801 -4.603 -10.571 11.865 hybrid contribution -0.675 0.350 1.800 1.954 sum 2.127 -4.253 -8.771 9.977 Atomic orbital electron populations 1.22075 0.94504 1.01390 1.02581 1.21064 0.95277 0.94620 0.85704 1.22106 1.01143 0.94910 1.03243 1.57224 1.69221 1.41709 1.13172 1.19422 0.95888 0.96313 0.79212 1.21430 1.01757 1.27436 1.01611 0.91867 1.25125 0.95265 0.97291 0.98409 1.69817 1.17709 1.46700 1.22683 0.86439 0.80521 0.80874 0.79535 1.19441 1.21540 1.19056 1.01366 0.73890 0.73203 0.72355 1.93483 1.74506 1.86943 1.41345 1.93513 1.69887 1.86795 1.48172 1.29848 1.23371 1.25331 0.98514 1.21150 0.96400 0.92809 0.94505 1.21472 0.95781 0.97808 0.99266 1.20836 0.99014 0.99099 0.87708 1.20389 0.98334 0.98731 0.89277 1.19516 0.94406 0.91783 0.86099 1.87761 1.41968 1.64203 1.25406 1.25970 0.87081 0.78412 0.97844 1.87271 1.73757 1.35718 1.27569 0.92409 0.90169 0.94439 0.87968 0.92584 0.88935 0.92723 0.95336 0.93422 0.92720 0.81006 0.79029 0.81200 0.87414 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 8.21 71.98 0.59 -4.09 16 2 C 0.14 4.39 3.24 44.99 0.15 4.54 16 3 C -0.16 -4.22 9.16 71.98 0.66 -3.56 16 4 N -0.97 -38.16 2.73 -497.40 -1.36 -39.52 16 5 C 0.22 9.68 4.07 85.63 0.35 10.03 16 6 C -0.48 -23.47 4.42 25.60 0.11 -23.36 16 7 H 0.06 3.29 6.14 -2.91 -0.02 3.27 16 8 C 0.04 1.88 5.05 84.65 0.43 2.31 16 9 N -0.93 -48.38 12.15 21.45 0.26 -48.12 16 10 Si 0.90 41.06 27.47 68.60 1.88 42.95 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.27 6.54 99.48 0.65 -11.62 16 14 S 2.70 108.03 5.62 -56.49 -0.32 107.71 16 15 O -0.97 -36.45 15.53 -128.00 -1.99 -38.43 16 16 O -0.99 -47.33 16.48 -128.00 -2.11 -49.44 16 17 C -0.68 -25.45 5.92 22.34 0.13 -25.31 16 18 C -0.03 -0.82 9.54 22.27 0.21 -0.61 16 19 C -0.12 -2.76 10.04 22.27 0.22 -2.54 16 20 C -0.05 -1.27 10.06 22.34 0.22 -1.05 16 21 C -0.02 -0.83 7.15 22.59 0.16 -0.67 16 22 C 0.13 5.43 6.16 22.59 0.14 5.57 16 23 O -0.28 -13.08 8.25 -76.10 -0.63 -13.71 16 24 C 0.22 9.32 7.85 113.37 0.89 10.21 16 25 O -0.33 -12.91 11.40 -76.03 -0.87 -13.78 16 26 H 0.06 2.17 6.65 -2.39 -0.02 2.15 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.28 7.93 -2.39 -0.02 1.26 16 29 H 0.10 2.90 6.91 -2.39 -0.02 2.88 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.60 6.69 -2.39 -0.02 1.58 16 33 H 0.03 1.42 5.97 -2.38 -0.01 1.40 16 34 H 0.05 2.03 5.88 -2.39 -0.01 2.01 16 35 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 36 H 0.17 3.90 7.33 -2.91 -0.02 3.87 16 37 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.11 5.12 5.81 -2.38 -0.01 5.11 16 40 H 0.13 5.01 8.14 -2.39 -0.02 4.99 16 Total: -1.00 -64.55 327.56 0.17 -64.38 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.02 Total: 16.50 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 4.27 Total: -28.54 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -1.10 Total: -87.64 kcal Atomic # 8 Polarization: -109.77 SS G_CDS: -5.59 Total: -115.36 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.88 Total: 42.95 kcal Atomic # 16 Polarization: 108.03 SS G_CDS: -0.32 Total: 107.71 kcal Total: -64.55 0.17 -64.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548979780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.258 kcal (2) G-P(sol) polarization free energy of solvation -64.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds