Wall clock time and date at job start Sat Apr 11 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46834 * 2 1 4 4 C 1.50706 * 109.46957 * 240.00717 * 2 1 3 5 5 H 1.08004 * 119.99489 * 274.96621 * 4 2 1 6 6 C 1.37871 * 120.00238 * 94.97344 * 4 2 1 7 7 N 1.31517 * 120.00136 * 184.89544 * 6 4 2 8 8 Si 1.86803 * 120.00111 * 4.89229 * 6 4 2 9 9 H 1.48505 * 109.47163 * 84.83206 * 8 6 4 10 10 H 1.48504 * 109.47318 * 204.83356 * 8 6 4 11 11 H 1.48502 * 109.47008 * 324.83270 * 8 6 4 12 12 N 1.46498 * 109.47804 * 120.00367 * 2 1 3 13 13 C 1.46502 * 119.99689 * 59.99816 * 12 2 1 14 14 S 1.65595 * 120.00230 * 240.00615 * 12 2 1 15 15 O 1.42102 * 106.40583 * 156.45450 * 14 12 2 16 16 O 1.42102 * 106.40493 * 23.53365 * 14 12 2 17 17 C 1.76204 * 107.21528 * 269.99559 * 14 12 2 18 18 C 1.38256 * 119.99973 * 269.97810 * 17 14 12 19 19 C 1.38213 * 120.00265 * 180.02562 * 18 17 14 20 20 C 1.38254 * 119.99958 * 359.81102 * 19 18 17 21 21 C 1.38223 * 119.99793 * 0.44163 * 20 19 18 22 22 C 1.50692 * 120.00168 * 179.79108 * 21 20 19 23 23 C 1.50706 * 109.47269 * 269.72817 * 22 21 20 24 24 O 1.20834 * 119.99612 * 359.97438 * 23 22 21 25 25 O 1.34227 * 120.00501 * 180.02562 * 23 22 21 26 26 C 1.38213 * 120.00318 * 90.00203 * 17 14 12 27 27 H 1.08997 * 109.47032 * 294.96786 * 1 2 3 28 28 H 1.09000 * 109.47570 * 54.97606 * 1 2 3 29 29 H 1.09005 * 109.47079 * 174.97596 * 1 2 3 30 30 H 0.97003 * 120.00023 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47312 * 270.00413 * 13 12 2 32 32 H 1.08994 * 109.47183 * 30.00707 * 13 12 2 33 33 H 1.09001 * 109.47114 * 150.00352 * 13 12 2 34 34 H 1.08002 * 120.00312 * 359.97438 * 18 17 14 35 35 H 1.07996 * 120.00167 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00325 * 180.23378 * 20 19 18 37 37 H 1.08999 * 109.47822 * 149.72730 * 22 21 20 38 38 H 1.09003 * 109.47120 * 29.72354 * 22 21 20 39 39 H 0.96698 * 117.00474 * 179.97438 * 25 23 22 40 40 H 1.08004 * 119.99505 * 359.97404 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1359 -1.7853 -1.2290 6 6 2.3596 0.0122 -2.3583 7 7 2.7056 -0.6130 -3.4624 8 14 2.3116 1.8792 -2.3180 9 1 3.5969 2.3960 -1.7828 10 1 2.1034 2.3989 -3.6935 11 1 1.1964 2.3270 -1.4456 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9704 0.1141 2.2861 15 8 2.8228 -0.5647 3.5258 16 8 2.6903 1.4972 2.1193 17 6 4.6445 -0.1182 1.7878 18 6 5.3649 -1.1968 2.2664 19 6 6.6782 -1.3787 1.8760 20 6 7.2703 -0.4843 1.0038 21 6 6.5517 0.5970 0.5294 22 6 7.1985 1.5746 -0.4176 23 6 7.8497 2.6818 0.3707 24 8 7.7938 2.6776 1.5777 25 8 8.4909 3.6731 -0.2680 26 6 5.2376 0.7782 0.9189 27 1 -0.3633 0.4338 0.9316 28 1 -0.3634 0.5898 -0.8415 29 1 -0.3633 -1.0238 -0.0900 30 1 2.9356 -0.1046 -4.2559 31 1 0.7377 -2.1446 1.9991 32 1 1.5296 -2.5969 0.4706 33 1 2.4630 -2.5820 1.9861 34 1 4.9017 -1.8968 2.9461 35 1 7.2410 -2.2210 2.2502 36 1 8.2953 -0.6285 0.6958 37 1 6.4409 1.9960 -1.0783 38 1 7.9532 1.0595 -1.0120 39 1 8.8925 4.3610 0.2802 40 1 4.6748 1.6208 0.5450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576948364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:51:11 Heat of formation + Delta-G solvation = -136.451177 kcal Electronic energy + Delta-G solvation = -26855.340987 eV Core-core repulsion = 22955.367401 eV Total energy + Delta-G solvation = -3899.973587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47914 -38.95747 -36.81020 -36.34680 -36.21044 -35.34397 -33.10072 -32.55231 -31.07727 -29.97783 -28.17614 -25.72697 -25.22520 -23.15371 -22.89632 -21.05308 -20.64431 -18.33952 -18.18341 -17.52483 -17.24235 -16.55351 -16.50187 -16.25433 -15.84016 -15.58134 -14.93534 -14.42048 -14.17862 -13.71051 -13.45365 -13.22985 -13.13422 -12.73070 -12.58399 -12.47638 -12.46856 -12.07252 -11.98920 -11.79522 -11.62379 -11.60991 -11.46977 -11.28195 -11.14769 -10.84091 -10.75026 -10.70552 -10.58105 -10.28362 -9.88380 -9.44766 -9.14585 -8.76622 -8.71423 -8.08475 -6.27409 -4.27431 0.84018 1.11829 1.39046 2.11058 2.92233 3.13212 3.24636 3.32330 3.48433 3.80540 4.24020 4.26952 4.42871 4.69390 4.93868 5.04085 5.06350 5.11137 5.21428 5.33308 5.40907 5.56138 5.58941 5.88198 6.01563 6.06302 6.12750 6.25637 6.32136 6.34930 6.36726 6.43130 6.44000 6.54915 6.64929 6.92711 6.96162 7.15513 7.38132 7.60011 7.77831 8.33817 8.78387 9.33765 10.84387 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.006410 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.515873 B = 4367.196517 C = 5696.924836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.230 3.770 3 H 0.057 0.943 4 C -0.517 4.517 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.886 5.886 8 Si 0.853 3.147 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.256 1.256 12 N -0.975 5.975 13 C 0.103 3.897 14 S 2.677 3.323 15 O -0.973 6.973 16 O -0.965 6.965 17 C -0.660 4.660 18 C -0.016 4.016 19 C -0.142 4.142 20 C -0.052 4.052 21 C -0.103 4.103 22 C -0.074 4.074 23 C 0.479 3.521 24 O -0.506 6.506 25 O -0.518 6.518 26 C 0.010 3.990 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.409 0.591 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 1.246 5.812 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.127 3.873 3 H 0.075 0.925 4 C -0.557 4.557 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.523 5.523 8 Si 0.679 3.321 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.181 1.181 12 N -0.815 5.815 13 C -0.043 4.043 14 S 2.768 3.232 15 O -0.964 6.964 16 O -0.955 6.955 17 C -0.746 4.746 18 C -0.035 4.035 19 C -0.161 4.161 20 C -0.071 4.071 21 C -0.104 4.104 22 C -0.112 4.112 23 C 0.320 3.680 24 O -0.393 6.393 25 O -0.330 6.330 26 C -0.009 4.009 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.268 0.732 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.514 1.427 6.446 10.774 hybrid contribution 0.991 1.159 -0.376 1.571 sum 9.505 2.586 6.070 11.571 Atomic orbital electron populations 1.22151 0.97539 1.01276 0.99284 1.19176 0.92026 0.92991 0.83090 0.92533 1.21210 1.43810 0.96134 0.94586 0.89790 1.24951 0.94160 0.97954 0.95351 1.69881 1.44855 1.35899 1.01628 0.87234 0.80160 0.86756 0.77980 1.19607 1.20809 1.18053 1.57656 1.63193 1.21674 1.38986 1.21276 0.99282 0.81503 1.02227 1.02372 0.73524 0.73747 0.73510 1.93511 1.86055 1.75564 1.41221 1.93535 1.83900 1.31649 1.86433 1.31152 1.26424 1.04973 1.12044 1.20883 0.94103 0.93904 0.94634 1.21141 0.95491 1.00109 0.99345 1.21168 0.98914 0.92823 0.94148 1.19235 0.94611 0.96584 0.99934 1.20290 1.01572 0.92117 0.97191 1.23466 0.75369 0.81957 0.87165 1.90756 1.56569 1.76112 1.15872 1.84539 1.66677 1.36083 1.45693 1.20708 0.93881 0.95761 0.90554 0.95181 0.92583 0.92717 0.92310 0.93483 0.89850 0.92681 0.84476 0.85146 0.85613 0.86076 0.86265 0.73248 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.10 37.15 0.34 -2.55 16 2 C 0.23 5.17 2.28 -69.08 -0.16 5.01 16 3 H 0.06 1.34 4.07 -51.93 -0.21 1.13 16 4 C -0.52 -13.01 8.72 -34.44 -0.30 -13.31 16 5 H 0.08 2.25 6.82 -52.48 -0.36 1.89 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -24.62 13.96 55.43 0.77 -23.85 16 8 Si 0.85 19.84 26.99 -169.99 -4.59 15.25 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.26 -5.85 6.82 56.52 0.39 -5.46 16 12 N -0.98 -19.52 3.06 -115.86 -0.35 -19.88 16 13 C 0.10 1.74 9.44 59.85 0.56 2.31 16 14 S 2.68 53.51 5.64 -107.50 -0.61 52.90 16 15 O -0.97 -19.63 16.36 -57.17 -0.94 -20.56 16 16 O -0.96 -21.55 15.85 -57.17 -0.91 -22.46 16 17 C -0.66 -12.27 5.97 -39.58 -0.24 -12.51 16 18 C -0.02 -0.26 9.52 -39.58 -0.38 -0.63 16 19 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 20 C -0.05 -0.72 9.70 -39.58 -0.38 -1.11 16 21 C -0.10 -1.62 4.37 -104.63 -0.46 -2.08 16 22 C -0.07 -0.95 5.94 -29.04 -0.17 -1.12 16 23 C 0.48 6.27 8.32 36.01 0.30 6.57 16 24 O -0.51 -8.32 16.79 -18.76 -0.31 -8.63 16 25 O -0.52 -5.18 13.42 -39.25 -0.53 -5.71 16 26 C 0.01 0.19 9.18 -39.59 -0.36 -0.17 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.44 6.56 -51.93 -0.34 1.10 16 33 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 34 H 0.14 1.91 7.62 -52.49 -0.40 1.51 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.55 8.09 -51.93 -0.42 1.13 16 38 H 0.12 1.14 8.08 -51.93 -0.42 0.72 16 39 H 0.41 2.34 9.10 45.56 0.41 2.75 16 40 H 0.13 2.58 7.62 -52.48 -0.40 2.18 16 LS Contribution 353.61 15.07 5.33 5.33 Total: -1.00 -33.61 353.61 -8.08 -41.69 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.21 Total: 5.87 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.74 Total: -19.95 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.42 Total: -43.73 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -2.68 Total: -57.37 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.59 Total: 15.25 kcal Atomic # 16 Polarization: 53.51 SS G_CDS: -0.61 Total: 52.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.61 -8.08 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576948364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.759 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds