Wall clock time and date at job start Sat Apr 11 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47566 * 345.15212 * 3 2 1 5 5 N 1.46907 * 109.47629 * 183.14392 * 4 3 2 6 6 C 1.46902 * 110.99693 * 67.29607 * 5 4 3 7 7 C 1.50691 * 109.46990 * 71.63037 * 6 5 4 8 8 H 1.08002 * 120.00442 * 5.04865 * 7 6 5 9 9 C 1.37877 * 119.99854 * 185.05340 * 7 6 5 10 10 N 1.31515 * 120.00238 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 120.00197 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46769 * 59.99677 * 11 9 7 13 13 H 1.48493 * 109.47265 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46922 * 300.00090 * 11 9 7 15 15 C 1.46903 * 110.99588 * 303.34422 * 5 4 3 16 16 N 1.46497 * 109.47386 * 292.48157 * 15 5 4 17 17 C 1.34608 * 134.66554 * 91.01770 * 16 15 5 18 18 O 1.21283 * 131.84732 * 0.03597 * 17 16 15 19 19 C 1.50370 * 96.31441 * 179.97438 * 17 16 15 20 20 C 1.46355 * 134.66567 * 271.02582 * 16 15 5 21 21 H 1.08999 * 113.05614 * 64.61115 * 20 16 15 22 22 C 1.53003 * 113.04915 * 295.44583 * 20 16 15 23 23 C 1.50699 * 109.46628 * 66.24754 * 22 20 16 24 24 C 1.38234 * 119.99910 * 261.18862 * 23 22 20 25 25 C 1.38244 * 119.99859 * 179.78693 * 24 23 22 26 26 C 1.38235 * 119.99969 * 0.46705 * 25 24 23 27 27 C 1.38238 * 119.99980 * 359.76842 * 26 25 24 28 28 C 1.38237 * 120.00061 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47111 * 225.14901 * 3 2 1 30 30 H 1.09008 * 109.47334 * 105.15481 * 3 2 1 31 31 H 1.09004 * 109.47373 * 63.14185 * 4 3 2 32 32 H 1.08998 * 109.47292 * 303.14266 * 4 3 2 33 33 H 1.09003 * 109.46778 * 191.62573 * 6 5 4 34 34 H 1.09004 * 109.47141 * 311.62632 * 6 5 4 35 35 H 0.97002 * 120.00348 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.46945 * 172.47968 * 15 5 4 37 37 H 1.09002 * 109.47176 * 52.48226 * 15 5 4 38 38 H 1.08995 * 114.35523 * 246.61431 * 19 17 16 39 39 H 1.09008 * 114.35902 * 113.45602 * 19 17 16 40 40 H 1.08993 * 109.46939 * 186.24373 * 22 20 16 41 41 H 1.09000 * 109.47128 * 306.25200 * 22 20 16 42 42 H 1.07994 * 120.00476 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.99567 * 180.24785 * 25 24 23 44 44 H 1.07997 * 119.99916 * 179.78342 * 26 25 24 45 45 H 1.08000 * 120.00229 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.00228 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3933 0.3696 5 7 4.5858 -1.3739 0.4432 6 6 5.0454 -0.5515 1.5704 7 6 4.7515 -1.2645 2.8650 8 1 4.3465 -2.2656 2.8504 9 6 4.9997 -0.6388 4.0683 10 7 5.4933 0.5801 4.0862 11 14 4.6348 -1.5223 5.6733 12 1 5.4374 -2.7696 5.7452 13 1 4.9875 -0.6407 6.8150 14 1 3.1899 -1.8592 5.7354 15 6 5.1701 -0.9077 -0.8214 16 7 4.9174 -1.8983 -1.8707 17 6 3.9405 -2.0883 -2.7771 18 8 2.9248 -1.4693 -3.0139 19 6 4.5303 -3.3237 -3.3993 20 6 5.6243 -3.0831 -2.3588 21 1 5.6888 -3.8781 -1.6158 22 6 6.9826 -2.7557 -2.9824 23 6 7.9114 -2.2329 -1.9170 24 6 8.1028 -0.8713 -1.7744 25 6 8.9514 -0.3915 -0.7942 26 6 9.6160 -1.2736 0.0371 27 6 9.4283 -2.6354 -0.1087 28 6 8.5764 -3.1151 -1.0860 29 1 2.9710 0.7256 0.7285 30 1 2.9712 0.2695 -0.9920 31 1 2.8024 -2.1092 -0.3891 32 1 2.7103 -1.6852 1.3371 33 1 6.1189 -0.3837 1.4836 34 1 4.5256 0.4065 1.5570 35 1 5.6683 1.0201 4.9328 36 1 6.2449 -0.7753 -0.6980 37 1 4.7169 0.0429 -1.1025 38 1 4.8555 -3.1956 -4.4317 39 1 3.9473 -4.2305 -3.2379 40 1 7.4068 -3.6577 -3.4234 41 1 6.8543 -1.9986 -3.7559 42 1 7.5872 -0.1822 -2.4268 43 1 9.0978 0.6724 -0.6803 44 1 10.2816 -0.8989 0.8005 45 1 9.9471 -3.3247 0.5410 46 1 8.4301 -4.1790 -1.2002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328632898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:55:54 Heat of formation + Delta-G solvation = 61.436993 kcal Electronic energy + Delta-G solvation = -28476.449970 eV Core-core repulsion = 24753.572447 eV Total energy + Delta-G solvation = -3722.877523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11140 -38.99373 -37.62406 -36.49549 -35.78488 -32.84537 -32.58604 -31.08546 -30.64751 -29.75181 -27.43996 -26.62677 -24.89551 -23.22716 -22.78603 -22.42977 -20.93351 -20.25499 -18.22960 -17.49551 -16.92862 -16.85361 -16.40987 -16.13678 -15.81085 -15.12052 -14.93727 -14.87940 -14.58700 -14.23017 -13.81481 -13.47319 -13.37135 -13.30928 -13.15577 -12.90735 -12.46787 -12.41729 -12.19585 -12.06123 -11.92071 -11.78118 -11.73375 -11.46920 -11.15493 -11.07453 -10.90138 -10.84172 -10.78512 -10.63713 -10.28709 -10.06577 -9.68660 -9.42043 -8.92313 -8.73385 -8.50213 -8.38402 -7.47270 -6.10761 -4.12223 1.46644 1.53228 2.65017 3.11990 3.20383 3.24296 3.29612 3.34132 3.37321 3.86918 3.94293 4.33906 4.43021 4.47414 4.76076 4.90763 4.96450 5.00781 5.12555 5.17251 5.25086 5.26111 5.34040 5.36363 5.48370 5.51697 5.59906 5.66301 5.67531 5.69635 5.79965 5.93305 5.97604 6.13028 6.15837 6.26160 6.53850 6.58644 6.63189 6.68062 6.71175 6.94576 7.06196 7.12654 7.17265 7.68704 7.85847 7.99706 8.02653 8.32099 8.43974 8.94748 9.52674 10.99153 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.005832 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.077211 B = 4799.563524 C = 7403.337778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.229 3.771 3 C -0.072 4.072 4 C 0.075 3.925 5 N -0.539 5.539 6 C 0.194 3.806 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.284 3.716 16 N -0.606 5.606 17 C 0.512 3.488 18 O -0.523 6.523 19 C -0.173 4.173 20 C 0.133 3.867 21 H 0.098 0.902 22 C -0.083 4.083 23 C -0.082 4.082 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.113 4.113 28 C -0.112 4.112 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.006 0.994 35 H 0.262 0.738 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 -6.559 -14.589 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.088 4.088 3 C -0.113 4.113 4 C -0.055 4.055 5 N -0.264 5.264 6 C 0.070 3.930 7 C -0.546 4.546 8 H 0.081 0.919 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.075 3.925 16 N -0.342 5.342 17 C 0.298 3.702 18 O -0.398 6.398 19 C -0.214 4.214 20 C 0.029 3.971 21 H 0.116 0.884 22 C -0.121 4.121 23 C -0.082 4.082 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.131 4.131 28 C -0.130 4.130 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.855 -6.369 -14.311 17.524 hybrid contribution 0.098 0.510 1.129 1.243 sum 7.952 -5.859 -13.182 16.472 Atomic orbital electron populations 1.81099 1.13116 1.09546 1.10079 1.29077 0.95135 0.92501 0.92091 1.20166 0.82183 1.04200 1.04796 1.21973 0.89006 0.91991 1.02545 1.62303 1.05359 1.55495 1.03263 1.19763 0.95754 0.90976 0.86520 1.21038 1.42600 1.01374 0.89565 0.91866 1.24930 0.95268 0.94870 0.99154 1.69921 1.44485 1.12602 1.26572 0.86608 0.78848 0.79500 0.82782 1.20185 1.21366 1.20268 1.22190 1.01005 0.86768 0.82565 1.50215 1.23344 1.27940 1.32713 1.21978 0.82593 0.85213 0.80460 1.90716 1.25026 1.56306 1.67760 1.23511 0.97745 0.99273 1.00825 1.22085 0.91918 0.88480 0.94597 0.88392 1.20872 0.93085 1.02031 0.96159 1.19646 0.97530 0.93527 0.97517 1.20962 0.98741 0.94824 0.98932 1.21130 0.96851 0.99760 0.95552 1.21140 0.99831 0.93522 0.98840 1.21104 0.98576 0.95619 0.97790 1.20939 0.96993 0.99237 0.95785 0.86670 0.88124 0.92069 0.89061 0.95167 0.97656 0.92798 0.87777 0.93177 0.86629 0.86437 0.89421 0.90548 0.86498 0.86193 0.86288 0.86317 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.43 18.54 42.15 0.78 -8.65 16 2 C 0.23 4.30 15.43 -20.76 -0.32 3.98 16 3 C -0.07 -1.22 4.99 -29.52 -0.15 -1.37 16 4 C 0.08 1.37 5.03 -3.82 -0.02 1.35 16 5 N -0.54 -10.08 4.79 -239.98 -1.15 -11.23 16 6 C 0.19 4.40 4.62 -4.98 -0.02 4.38 16 7 C -0.51 -13.05 8.41 -34.44 -0.29 -13.34 16 8 H 0.06 1.65 7.69 -52.49 -0.40 1.24 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -24.82 13.29 55.43 0.74 -24.08 16 11 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.28 4.41 5.95 -63.32 -0.38 4.04 16 16 N -0.61 -8.00 3.00 -195.88 -0.59 -8.58 16 17 C 0.51 7.00 8.23 -23.48 -0.19 6.81 16 18 O -0.52 -9.24 17.78 5.56 0.10 -9.14 16 19 C -0.17 -1.48 8.13 -28.10 -0.23 -1.71 16 20 C 0.13 1.30 4.25 -80.33 -0.34 0.95 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 22 C -0.08 -0.68 5.27 -27.88 -0.15 -0.82 16 23 C -0.08 -0.88 4.43 -104.62 -0.46 -1.34 16 24 C -0.12 -1.33 6.84 -39.58 -0.27 -1.60 16 25 C -0.11 -1.39 10.04 -39.58 -0.40 -1.79 16 26 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 27 C -0.11 -1.34 10.05 -39.58 -0.40 -1.73 16 28 C -0.11 -1.23 9.73 -39.58 -0.39 -1.61 16 29 H 0.12 2.03 6.26 -51.93 -0.33 1.70 16 30 H 0.10 1.64 6.15 -51.92 -0.32 1.32 16 31 H 0.06 1.10 6.93 -51.93 -0.36 0.74 16 32 H 0.09 1.84 7.22 -51.93 -0.37 1.47 16 33 H 0.03 0.73 7.80 -51.93 -0.40 0.33 16 34 H 0.01 0.14 6.05 -51.93 -0.31 -0.18 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.10 1.61 4.18 -51.93 -0.22 1.40 16 37 H 0.05 0.78 5.91 -51.93 -0.31 0.48 16 38 H 0.12 0.72 8.00 -51.93 -0.42 0.30 16 39 H 0.12 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 42 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -31.60 382.40 -10.25 -41.85 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.37 Total: 2.39 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -4.50 Total: -4.15 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.22 Total: -52.55 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.10 Total: -9.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.60 -10.25 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328632898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.284 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds