Wall clock time and date at job start Sat Apr 11 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47174 * 270.00363 * 3 2 1 5 5 H 1.48503 * 109.46898 * 30.00338 * 3 2 1 6 6 H 1.48503 * 109.47025 * 150.00257 * 3 2 1 7 7 C 1.38622 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00383 * 0.02562 * 7 2 1 9 9 O 1.34809 * 120.00389 * 179.97438 * 7 2 1 10 10 C 1.35796 * 117.00833 * 185.05605 * 9 7 2 11 11 C 1.38893 * 119.99965 * 174.73324 * 10 9 7 12 12 C 1.38014 * 120.00778 * 180.23531 * 11 10 9 13 13 C 1.38943 * 119.99201 * 359.49313 * 12 11 10 14 14 N 1.39777 * 120.00777 * 180.27420 * 13 12 11 15 15 C 1.46505 * 120.00305 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.47041 * 180.02562 * 15 14 13 17 17 C 1.39870 * 126.03784 * 90.02604 * 16 15 14 18 18 N 1.30837 * 108.20451 * 179.97438 * 17 16 15 19 19 N 1.40093 * 108.19831 * 0.02562 * 18 17 16 20 20 C 1.46501 * 126.03021 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47048 * 304.97332 * 20 19 18 22 22 C 1.53777 * 113.61159 * 272.50085 * 21 20 19 23 23 C 1.53784 * 87.07725 * 220.02039 * 22 21 20 24 24 C 1.53776 * 87.08182 * 25.43699 * 23 22 21 25 25 C 1.34938 * 107.92849 * 359.75570 * 19 18 17 26 26 C 1.38954 * 119.98932 * 0.25430 * 13 12 11 27 27 C 1.38011 * 119.99420 * 0.02562 * 26 13 12 28 28 H 0.96994 * 120.00021 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99862 * 0.02562 * 11 10 9 30 30 H 1.08000 * 120.00120 * 179.76863 * 12 11 10 31 31 H 0.97000 * 119.99714 * 0.02562 * 14 13 12 32 32 H 1.08997 * 109.46968 * 300.00085 * 15 14 13 33 33 H 1.08999 * 109.46784 * 60.00183 * 15 14 13 34 34 H 1.08009 * 125.89787 * 359.96141 * 17 16 15 35 35 H 1.09002 * 109.47340 * 64.97194 * 20 19 18 36 36 H 1.08999 * 109.46770 * 184.97788 * 20 19 18 37 37 H 1.08998 * 112.85064 * 43.80952 * 21 20 19 38 38 H 1.09001 * 113.61621 * 334.56549 * 22 21 20 39 39 H 1.08999 * 113.61611 * 105.47259 * 22 21 20 40 40 H 1.08997 * 113.61595 * 270.88135 * 23 22 21 41 41 H 1.09009 * 113.61607 * 139.98403 * 23 22 21 42 42 H 1.09005 * 113.60958 * 220.02057 * 24 23 22 43 43 H 1.08995 * 113.69665 * 89.12902 * 24 23 22 44 44 H 1.08005 * 126.13103 * 180.23881 * 25 19 18 45 45 H 1.07997 * 120.00520 * 180.02562 * 26 13 12 46 46 H 1.07991 * 119.99810 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4400 0.7000 7 6 2.0089 -1.2005 -0.0005 8 1 1.4689 -2.1359 -0.0014 9 8 3.3570 -1.2006 -0.0011 10 6 3.9735 -2.4058 -0.1082 11 6 5.3559 -2.4707 -0.2253 12 6 5.9823 -3.6952 -0.3391 13 6 5.2307 -4.8637 -0.3259 14 7 5.8652 -6.1043 -0.4353 15 6 5.0726 -7.3364 -0.4208 16 6 5.9896 -8.5252 -0.5518 17 6 6.5870 -9.2238 0.5025 18 7 7.3102 -10.1890 -0.0046 19 7 7.1960 -10.1346 -1.3998 20 6 7.8465 -11.0367 -2.3534 21 6 9.3565 -11.0370 -2.1067 22 6 10.1053 -9.9309 -2.8687 23 6 11.2085 -10.9690 -3.1334 24 6 10.1227 -12.0467 -2.9776 25 6 6.3765 -9.1084 -1.7098 26 6 3.8481 -4.7988 -0.2034 27 6 3.2217 -3.5738 -0.0955 28 1 -0.4850 0.8400 0.0004 29 1 5.9406 -1.5626 -0.2308 30 1 7.0570 -3.7453 -0.4339 31 1 6.8305 -6.1496 -0.5201 32 1 4.5229 -7.4037 0.5180 33 1 4.3696 -7.3259 -1.2536 34 1 6.4714 -9.0041 1.5537 35 1 7.4568 -12.0463 -2.2225 36 1 7.6444 -10.6981 -3.3696 37 1 9.6125 -11.0903 -1.0486 38 1 9.5927 -9.5987 -3.7715 39 1 10.4264 -9.1044 -2.2347 40 1 11.9719 -11.0027 -2.3562 41 1 11.6280 -10.9139 -4.1380 42 1 10.4579 -12.9284 -2.4313 43 1 9.6141 -12.2941 -3.9093 44 1 6.0836 -8.8054 -2.7043 45 1 3.2636 -5.7069 -0.1927 46 1 2.1472 -3.5233 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339869306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:55:56 Heat of formation + Delta-G solvation = 84.225159 kcal Electronic energy + Delta-G solvation = -25730.113008 eV Core-core repulsion = 22008.223654 eV Total energy + Delta-G solvation = -3721.889354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22369 -40.73902 -39.74042 -38.77181 -36.01541 -34.33488 -33.93875 -31.86084 -31.67712 -29.80605 -28.56711 -26.91649 -26.53501 -25.86973 -24.34676 -23.49239 -22.14803 -21.72759 -21.23734 -20.17535 -19.77047 -19.07321 -18.05524 -17.49895 -16.66421 -16.62060 -16.24508 -16.02326 -15.67893 -15.57002 -15.40198 -15.13480 -15.08515 -14.72485 -14.41045 -14.15058 -14.02986 -13.73112 -13.65020 -13.50091 -13.36656 -13.05138 -13.01559 -12.93811 -12.54096 -12.39677 -12.34588 -11.89901 -11.70942 -11.52946 -11.32507 -11.21051 -11.14987 -10.93528 -10.32376 -10.21254 -9.74273 -9.42939 -8.40250 -7.90316 -6.07338 0.62209 0.93391 0.94928 1.35143 1.39992 1.56769 1.60646 1.70368 2.35337 2.88659 2.97268 3.22464 3.35540 3.45766 3.58557 3.68728 3.86768 3.92599 4.00745 4.16847 4.21008 4.22949 4.29353 4.34051 4.51356 4.53896 4.62153 4.75385 4.79971 4.80890 4.81884 4.83182 4.93367 4.97648 5.03948 5.07692 5.23858 5.26009 5.26346 5.36924 5.51058 5.53641 5.67340 5.69764 5.88320 5.92944 6.12561 6.18585 6.66905 6.74121 6.95797 7.11512 7.77260 8.72132 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.028826 B = 0.001806 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.108512 B =15500.147321 C =16032.786813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.389 4.389 8 H 0.078 0.922 9 O -0.256 6.256 10 C 0.062 3.938 11 C -0.141 4.141 12 C -0.146 4.146 13 C 0.164 3.836 14 N -0.739 5.739 15 C 0.213 3.787 16 C -0.264 4.264 17 C 0.054 3.946 18 N -0.327 5.327 19 N -0.367 5.367 20 C 0.137 3.863 21 C -0.124 4.124 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.123 4.123 25 C 0.081 3.919 26 C -0.154 4.154 27 C -0.187 4.187 28 H 0.281 0.719 29 H 0.128 0.872 30 H 0.149 0.851 31 H 0.401 0.599 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.190 0.810 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.200 0.800 45 H 0.132 0.868 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.391 -25.853 -7.864 34.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.466 4.466 8 H 0.095 0.905 9 O -0.165 6.165 10 C 0.014 3.986 11 C -0.161 4.161 12 C -0.168 4.168 13 C 0.062 3.938 14 N -0.373 5.373 15 C 0.088 3.912 16 C -0.276 4.276 17 C -0.132 4.132 18 N -0.148 5.148 19 N -0.148 5.148 20 C 0.017 3.983 21 C -0.143 4.143 22 C -0.175 4.175 23 C -0.180 4.180 24 C -0.161 4.161 25 C -0.067 4.067 26 C -0.177 4.177 27 C -0.207 4.207 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.236 0.764 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.207 0.793 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.217 0.783 45 H 0.150 0.850 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.019 -26.788 -7.691 35.519 hybrid contribution -0.732 1.400 0.176 1.590 sum 21.287 -25.387 -7.515 33.973 Atomic orbital electron populations 1.69750 1.06820 1.29198 1.51601 1.25247 0.95890 1.02052 0.96197 0.85200 0.78731 0.77570 0.79080 1.19246 1.19512 1.18830 1.20674 0.78558 0.95828 1.51517 0.90472 1.83495 1.20687 1.27389 1.84949 1.19470 0.93146 0.85076 1.00909 1.20272 0.90450 0.99073 1.06287 1.20469 0.99955 0.89536 1.06839 1.17578 0.91102 0.86467 0.98624 1.44511 1.08430 1.01022 1.83306 1.19295 0.91310 0.79601 1.01000 1.20001 1.10996 1.04097 0.92493 1.24081 0.95127 0.93046 1.00970 1.77304 1.24841 1.23833 0.88843 1.48866 1.36305 1.24861 1.04769 1.22114 0.92078 0.93372 0.90768 1.22823 0.92565 0.98860 1.00033 1.23022 0.97924 0.96368 1.00217 1.22793 0.96515 0.96190 1.02471 1.22904 0.96534 0.96561 1.00133 1.22841 0.93332 0.89474 1.01073 1.20480 0.93365 0.96592 1.07242 1.21072 0.99804 0.92767 1.07023 0.90931 0.85443 0.83296 0.76386 0.92383 0.91990 0.79288 0.89128 0.85873 0.90302 0.88802 0.93210 0.90695 0.90276 0.91030 0.88028 0.78347 0.85011 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.96 21.61 0.30 -56.92 16 2 C 0.00 0.17 5.49 84.82 0.47 0.64 16 3 Si 0.97 47.02 28.62 68.60 1.96 48.98 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.39 -23.64 9.94 67.91 0.68 -22.96 16 8 H 0.08 4.90 5.43 -2.91 -0.02 4.89 16 9 O -0.26 -14.40 8.58 -23.04 -0.20 -14.60 16 10 C 0.06 3.01 6.65 22.59 0.15 3.16 16 11 C -0.14 -5.51 9.98 22.37 0.22 -5.29 16 12 C -0.15 -4.54 9.89 22.39 0.22 -4.32 16 13 C 0.16 4.97 6.66 38.21 0.25 5.22 16 14 N -0.74 -16.48 5.73 -342.96 -1.96 -18.44 16 15 C 0.21 4.12 5.39 85.63 0.46 4.58 16 16 C -0.26 -4.58 5.47 -20.14 -0.11 -4.69 16 17 C 0.05 1.02 11.96 85.24 1.02 2.04 16 18 N -0.33 -6.71 12.27 -57.02 -0.70 -7.41 16 19 N -0.37 -5.59 3.68 -348.06 -1.28 -6.87 16 20 C 0.14 1.22 6.35 86.38 0.55 1.76 16 21 C -0.12 -1.25 3.87 -10.27 -0.04 -1.28 16 22 C -0.14 -1.33 7.63 31.12 0.24 -1.10 16 23 C -0.14 -1.12 8.08 31.12 0.25 -0.87 16 24 C -0.12 -0.79 7.64 31.12 0.24 -0.55 16 25 C 0.08 1.15 11.36 83.54 0.95 2.10 16 26 C -0.15 -5.46 9.30 22.39 0.21 -5.25 16 27 C -0.19 -8.44 9.16 22.38 0.20 -8.24 16 28 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.40 7.82 8.48 -92.71 -0.79 7.03 16 32 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 33 H 0.06 1.18 7.95 -2.39 -0.02 1.16 16 34 H 0.19 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.43 7.77 -2.39 -0.02 0.41 16 37 H 0.08 1.22 7.96 -2.39 -0.02 1.20 16 38 H 0.09 0.68 7.90 -2.39 -0.02 0.66 16 39 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 43 H 0.10 0.31 8.10 -2.39 -0.02 0.29 16 44 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.13 4.00 6.73 -2.91 -0.02 3.98 16 46 H 0.11 5.26 5.63 -2.92 -0.02 5.24 16 Total: -1.00 -73.12 384.13 4.29 -68.83 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.21 Total: 21.46 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 5.96 Total: -35.04 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.64 Total: -89.64 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.20 Total: -14.60 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.96 Total: 48.98 kcal Total: -73.12 4.29 -68.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339869306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.058 kcal (2) G-P(sol) polarization free energy of solvation -73.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds