Wall clock time and date at job start Sat Apr 11 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39791 * 120.08149 * 280.54120 * 3 2 1 5 5 C 1.37680 * 119.91692 * 179.75120 * 4 3 2 6 6 C 1.39121 * 120.08020 * 0.54876 * 5 4 3 7 7 N 1.39547 * 119.91941 * 179.72543 * 6 5 4 8 8 C 1.34778 * 119.99811 * 335.10196 * 7 6 5 9 9 O 1.21271 * 120.00168 * 354.48282 * 8 7 6 10 10 C 1.50702 * 119.99805 * 174.48168 * 8 7 6 11 11 H 1.08998 * 109.47181 * 39.99451 * 10 8 7 12 12 N 1.46901 * 109.47207 * 160.00128 * 10 8 7 13 13 C 1.53006 * 109.46978 * 279.99936 * 10 8 7 14 14 C 1.53006 * 109.46815 * 174.99869 * 13 10 8 15 15 C 1.53002 * 109.46961 * 179.97438 * 14 13 10 16 16 C 1.50693 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00255 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99936 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00251 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47121 * 89.99846 * 20 18 16 22 22 H 1.48496 * 109.47079 * 209.99951 * 20 18 16 23 23 H 1.48500 * 109.47037 * 329.99813 * 20 18 16 24 24 C 1.39078 * 120.16112 * 359.44650 * 6 5 4 25 25 C 1.50699 * 119.96071 * 180.25229 * 24 6 5 26 26 C 1.53001 * 117.49981 * 188.62470 * 25 24 6 27 27 C 1.52997 * 60.00092 * 252.51263 * 26 25 24 28 28 C 1.37713 * 120.08006 * 0.27932 * 24 6 5 29 29 H 1.07999 * 120.03871 * 0.04484 * 4 3 2 30 30 H 1.08004 * 119.95962 * 180.29597 * 5 4 3 31 31 H 0.97004 * 119.99992 * 155.09414 * 7 6 5 32 32 H 1.00900 * 110.99363 * 296.04291 * 12 10 8 33 33 H 1.00893 * 111.00086 * 59.99655 * 12 10 8 34 34 H 1.08998 * 109.46986 * 294.99992 * 13 10 8 35 35 H 1.08995 * 109.47227 * 55.00285 * 13 10 8 36 36 H 1.08994 * 109.47658 * 300.00301 * 14 13 10 37 37 H 1.09005 * 109.46839 * 60.00223 * 14 13 10 38 38 H 1.08998 * 109.47190 * 300.00337 * 15 14 13 39 39 H 1.08996 * 109.46825 * 59.99988 * 15 14 13 40 40 H 0.97001 * 119.99938 * 180.02562 * 19 18 16 41 41 H 1.08997 * 115.54940 * 334.33627 * 25 24 6 42 42 H 1.09000 * 117.49562 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.50081 * 145.02176 * 26 25 24 44 44 H 1.09000 * 117.49872 * 252.51149 * 27 26 25 45 45 H 1.09000 * 117.52105 * 107.48198 * 27 26 25 46 46 H 1.08001 * 120.04498 * 179.97438 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.2203 1.1892 5 6 4.6455 -0.2241 1.1844 6 6 5.3393 0.0030 0.0001 7 7 6.7348 0.0041 0.0001 8 6 7.4083 0.2884 1.1324 9 8 6.8059 0.6406 2.1242 10 6 8.9102 0.1687 1.1658 11 1 9.3255 0.5419 0.2297 12 7 9.4396 0.9583 2.2858 13 6 9.3008 -1.2995 1.3474 14 6 10.8219 -1.4375 1.2567 15 6 11.2126 -2.9055 1.4389 16 6 12.7108 -3.0414 1.3501 17 1 13.3231 -2.1679 1.1811 18 6 13.2998 -4.2807 1.4847 19 7 12.5541 -5.3443 1.6910 20 14 15.1570 -4.4491 1.3754 21 1 15.7484 -4.2964 2.7290 22 1 15.5016 -5.7877 0.8328 23 1 15.6974 -3.3969 0.4775 24 6 4.6455 0.2231 -1.1850 25 6 5.4015 0.4630 -2.4663 26 6 4.5951 0.8976 -3.6918 27 6 5.1703 -0.5182 -3.6173 28 6 3.2683 0.2227 -1.1889 29 1 2.7308 -0.3926 2.1097 30 1 5.1876 -0.3995 2.1019 31 1 7.2200 -0.1998 -0.8147 32 1 9.2505 1.9409 2.1565 33 1 9.0693 0.6315 3.1655 34 1 8.9619 -1.6476 2.3232 35 1 8.8344 -1.8989 0.5657 36 1 11.1608 -1.0894 0.2810 37 1 11.2884 -0.8380 2.0385 38 1 10.8738 -3.2533 2.4148 39 1 10.7461 -3.5053 0.6575 40 1 12.9686 -6.2161 1.7861 41 1 6.4036 0.8759 -2.3506 42 1 3.5177 1.0104 -3.5710 43 1 5.0664 1.5967 -4.3825 44 1 6.0202 -0.7505 -4.2590 45 1 4.4717 -1.3374 -3.4476 46 1 2.7301 0.3942 -2.1094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:56:21 Heat of formation + Delta-G solvation = 29.906524 kcal Electronic energy + Delta-G solvation = -26345.979648 eV Core-core repulsion = 22621.734862 eV Total energy + Delta-G solvation = -3724.244787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31195 -39.63211 -37.53659 -36.66364 -35.86977 -35.14646 -33.43330 -31.45023 -31.11624 -30.60369 -28.03955 -25.68003 -24.77429 -23.84344 -22.79617 -22.29591 -21.31989 -20.35230 -20.11162 -18.85194 -18.25195 -17.52583 -16.50185 -16.15633 -15.92175 -15.45810 -15.22556 -14.99364 -14.74732 -14.50298 -14.34645 -14.18196 -14.11458 -13.92981 -13.19175 -13.08355 -13.00368 -12.95072 -12.46387 -12.29402 -11.90118 -11.85513 -11.65660 -11.60039 -11.23459 -11.16950 -10.88219 -10.84797 -10.79532 -10.62773 -10.48905 -10.30112 -9.68346 -9.29434 -9.18577 -9.10465 -8.74947 -8.39783 -8.33496 -5.99093 -4.00928 0.34759 0.88973 2.10379 2.36909 2.66892 2.69357 3.30492 3.32476 3.38798 3.41878 3.56892 3.67000 4.01517 4.23235 4.35435 4.45305 4.47108 4.53862 4.55936 4.64032 4.84999 4.97177 5.01569 5.11499 5.21838 5.23913 5.31971 5.36879 5.48764 5.61073 5.67327 5.72135 5.79656 5.87387 5.94224 5.98842 6.01380 6.32608 6.49883 6.72565 6.85881 6.92884 7.06800 7.16902 7.18819 7.36171 7.69657 7.71285 7.84324 8.01840 8.44831 9.06685 9.63119 11.12239 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.002237 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.376035 B =12512.180095 C =12952.107476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.261 3.739 3 C -0.055 4.055 4 C -0.049 4.049 5 C -0.133 4.133 6 C 0.194 3.806 7 N -0.666 5.666 8 C 0.483 3.517 9 O -0.521 6.521 10 C 0.080 3.920 11 H 0.104 0.896 12 N -0.809 5.809 13 C -0.105 4.105 14 C -0.100 4.100 15 C 0.019 3.981 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.088 4.088 25 C -0.123 4.123 26 C -0.172 4.172 27 C -0.166 4.166 28 C -0.050 4.050 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.417 0.583 32 H 0.340 0.660 33 H 0.352 0.648 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.014 0.986 39 H 0.012 0.988 40 H 0.260 0.740 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 13.685 -8.667 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.054 4.054 3 C -0.059 4.059 4 C -0.070 4.070 5 C -0.153 4.153 6 C 0.097 3.903 7 N -0.310 5.310 8 C 0.270 3.730 9 O -0.396 6.396 10 C -0.036 4.036 11 H 0.122 0.878 12 N -0.338 5.338 13 C -0.143 4.143 14 C -0.137 4.137 15 C -0.018 4.018 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.091 4.091 25 C -0.142 4.142 26 C -0.209 4.209 27 C -0.203 4.203 28 C -0.071 4.071 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.255 0.745 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.210 13.469 -8.104 24.056 hybrid contribution 0.607 -0.046 -0.304 0.681 sum -17.603 13.422 -8.408 23.679 Atomic orbital electron populations 1.81259 1.12070 1.09460 1.07380 1.25685 0.92594 0.93434 0.93728 1.15910 0.84271 1.10535 0.95234 1.21081 0.93672 0.95628 0.96627 1.21379 0.93581 1.01434 0.98906 1.17851 0.83254 0.95421 0.93804 1.43857 1.04465 1.68036 1.14639 1.23014 0.93048 0.74816 0.82118 1.90650 1.70202 1.44728 1.34045 1.21843 0.85228 0.98804 0.97694 0.87773 1.59014 1.63393 1.06861 1.04505 1.21698 1.00537 0.89800 1.02283 1.21545 0.90500 1.00728 1.00967 1.19118 0.96079 0.89662 0.96914 1.21262 0.92402 0.93139 1.48756 0.92651 1.25037 0.98027 0.96075 0.95452 1.69966 1.35034 0.98767 1.49879 0.86614 0.85949 0.77284 0.78266 1.20693 1.21323 1.19893 1.18671 0.92685 1.04737 0.93001 1.20880 1.00081 1.06026 0.87169 1.23073 1.00059 0.98366 0.99418 1.23118 1.03831 0.93326 1.00009 1.20770 0.92742 0.96698 0.96863 0.84624 0.82492 0.74538 0.84763 0.83335 0.91676 0.91710 0.93577 0.91738 0.96768 0.96929 0.93076 0.86784 0.88316 0.88100 0.87911 0.88219 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.20 18.54 41.84 0.78 -4.42 16 2 C 0.26 2.60 15.33 -22.47 -0.34 2.26 16 3 C -0.06 -0.47 5.74 -106.82 -0.61 -1.08 16 4 C -0.05 -0.42 9.75 -39.21 -0.38 -0.80 16 5 C -0.13 -1.32 8.69 -39.46 -0.34 -1.66 16 6 C 0.19 1.79 6.41 -83.71 -0.54 1.25 16 7 N -0.67 -5.75 5.06 -9.85 -0.05 -5.80 16 8 C 0.48 5.19 6.87 -10.98 -0.08 5.12 16 9 O -0.52 -6.82 13.39 5.57 0.07 -6.74 16 10 C 0.08 0.89 3.15 -68.86 -0.22 0.67 16 11 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 12 N -0.81 -9.27 8.44 -5.65 -0.05 -9.32 16 13 C -0.10 -1.51 4.84 -26.72 -0.13 -1.64 16 14 C -0.10 -1.87 5.04 -26.73 -0.13 -2.00 16 15 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 16 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.09 -0.67 5.62 -104.50 -0.59 -1.26 16 25 C -0.12 -0.74 5.41 -91.77 -0.50 -1.23 16 26 C -0.17 -0.86 9.86 -26.73 -0.26 -1.12 16 27 C -0.17 -0.88 10.16 -26.73 -0.27 -1.15 16 28 C -0.05 -0.37 8.99 -39.21 -0.35 -0.72 16 29 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.16 1.79 5.77 -52.48 -0.30 1.48 16 31 H 0.42 2.69 7.35 -40.82 -0.30 2.39 16 32 H 0.34 3.29 9.06 -39.29 -0.36 2.94 16 33 H 0.35 4.20 8.58 -39.30 -0.34 3.86 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.26 7.75 -51.93 -0.40 0.85 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.11 0.60 7.16 -51.93 -0.37 0.23 16 42 H 0.10 0.45 6.17 -51.93 -0.32 0.13 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.14 0.78 6.01 -52.49 -0.32 0.46 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -32.49 390.22 -9.42 -41.91 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.48 Total: 4.23 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -5.30 Total: -16.21 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 1.41 Total: -45.43 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.07 Total: -6.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.49 -9.42 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.821 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds