Wall clock time and date at job start Sat Apr 11 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39791 * 120.08149 * 280.54120 * 3 2 1 5 5 C 1.37680 * 119.91692 * 179.75120 * 4 3 2 6 6 C 1.39121 * 120.08020 * 0.54876 * 5 4 3 7 7 N 1.39547 * 119.91941 * 179.72543 * 6 5 4 8 8 C 1.34778 * 119.99811 * 335.10196 * 7 6 5 9 9 O 1.21271 * 120.00168 * 354.48282 * 8 7 6 10 10 C 1.50702 * 119.99805 * 174.48168 * 8 7 6 11 11 H 1.08998 * 109.47181 * 39.99451 * 10 8 7 12 12 N 1.46901 * 109.47207 * 160.00128 * 10 8 7 13 13 C 1.53006 * 109.46978 * 279.99936 * 10 8 7 14 14 C 1.53006 * 109.46815 * 174.99869 * 13 10 8 15 15 C 1.53002 * 109.46961 * 179.97438 * 14 13 10 16 16 C 1.50693 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00255 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99936 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00251 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47121 * 89.99846 * 20 18 16 22 22 H 1.48496 * 109.47079 * 209.99951 * 20 18 16 23 23 H 1.48500 * 109.47037 * 329.99813 * 20 18 16 24 24 C 1.39078 * 120.16112 * 359.44650 * 6 5 4 25 25 C 1.50699 * 119.96071 * 180.25229 * 24 6 5 26 26 C 1.53001 * 117.49981 * 188.62470 * 25 24 6 27 27 C 1.52997 * 60.00092 * 252.51263 * 26 25 24 28 28 C 1.37713 * 120.08006 * 0.27932 * 24 6 5 29 29 H 1.07999 * 120.03871 * 0.04484 * 4 3 2 30 30 H 1.08004 * 119.95962 * 180.29597 * 5 4 3 31 31 H 0.97004 * 119.99992 * 155.09414 * 7 6 5 32 32 H 1.00900 * 110.99363 * 296.04291 * 12 10 8 33 33 H 1.00893 * 111.00086 * 59.99655 * 12 10 8 34 34 H 1.08998 * 109.46986 * 294.99992 * 13 10 8 35 35 H 1.08995 * 109.47227 * 55.00285 * 13 10 8 36 36 H 1.08994 * 109.47658 * 300.00301 * 14 13 10 37 37 H 1.09005 * 109.46839 * 60.00223 * 14 13 10 38 38 H 1.08998 * 109.47190 * 300.00337 * 15 14 13 39 39 H 1.08996 * 109.46825 * 59.99988 * 15 14 13 40 40 H 0.97001 * 119.99938 * 180.02562 * 19 18 16 41 41 H 1.08997 * 115.54940 * 334.33627 * 25 24 6 42 42 H 1.09000 * 117.49562 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.50081 * 145.02176 * 26 25 24 44 44 H 1.09000 * 117.49872 * 252.51149 * 27 26 25 45 45 H 1.09000 * 117.52105 * 107.48198 * 27 26 25 46 46 H 1.08001 * 120.04498 * 179.97438 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.2203 1.1892 5 6 4.6455 -0.2241 1.1844 6 6 5.3393 0.0030 0.0001 7 7 6.7348 0.0041 0.0001 8 6 7.4083 0.2884 1.1324 9 8 6.8059 0.6406 2.1242 10 6 8.9102 0.1687 1.1658 11 1 9.3255 0.5419 0.2297 12 7 9.4396 0.9583 2.2858 13 6 9.3008 -1.2995 1.3474 14 6 10.8219 -1.4375 1.2567 15 6 11.2126 -2.9055 1.4389 16 6 12.7108 -3.0414 1.3501 17 1 13.3231 -2.1679 1.1811 18 6 13.2998 -4.2807 1.4847 19 7 12.5541 -5.3443 1.6910 20 14 15.1570 -4.4491 1.3754 21 1 15.7484 -4.2964 2.7290 22 1 15.5016 -5.7877 0.8328 23 1 15.6974 -3.3969 0.4775 24 6 4.6455 0.2231 -1.1850 25 6 5.4015 0.4630 -2.4663 26 6 4.5951 0.8976 -3.6918 27 6 5.1703 -0.5182 -3.6173 28 6 3.2683 0.2227 -1.1889 29 1 2.7308 -0.3926 2.1097 30 1 5.1876 -0.3995 2.1019 31 1 7.2200 -0.1998 -0.8147 32 1 9.2505 1.9409 2.1565 33 1 9.0693 0.6315 3.1655 34 1 8.9619 -1.6476 2.3232 35 1 8.8344 -1.8989 0.5657 36 1 11.1608 -1.0894 0.2810 37 1 11.2884 -0.8380 2.0385 38 1 10.8738 -3.2533 2.4148 39 1 10.7461 -3.5053 0.6575 40 1 12.9686 -6.2161 1.7861 41 1 6.4036 0.8759 -2.3506 42 1 3.5177 1.0104 -3.5710 43 1 5.0664 1.5967 -4.3825 44 1 6.0202 -0.7505 -4.2590 45 1 4.4717 -1.3374 -3.4476 46 1 2.7301 0.3942 -2.1094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:56:20 Heat of formation + Delta-G solvation = 10.509163 kcal Electronic energy + Delta-G solvation = -26346.820781 eV Core-core repulsion = 22621.734862 eV Total energy + Delta-G solvation = -3725.085919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06743 -40.37848 -38.16233 -37.48289 -36.98091 -35.94010 -35.23063 -33.11032 -31.75119 -31.34653 -29.50959 -27.00701 -25.41285 -25.01321 -23.61782 -23.09424 -21.96398 -21.71448 -21.15947 -19.47470 -19.01208 -18.40441 -18.36874 -17.15595 -16.76257 -16.44990 -16.19115 -15.94448 -15.80344 -15.45976 -15.31018 -15.07300 -14.91514 -14.66187 -14.52916 -14.25603 -13.93134 -13.75969 -13.67040 -13.59169 -13.08766 -12.89910 -12.80527 -12.47377 -12.35057 -12.32275 -12.19945 -12.12179 -11.65417 -11.63108 -11.40645 -11.32988 -11.23947 -11.16837 -10.90025 -10.49160 -9.83179 -9.68748 -9.10092 -8.14721 -6.24549 -0.37191 0.24836 1.27084 1.43581 1.44470 1.55422 1.56772 1.91410 1.92996 2.45350 2.70352 2.82006 3.14206 3.18685 3.42123 3.49291 3.66764 3.77857 3.94971 4.00150 4.09339 4.14684 4.17850 4.28899 4.35355 4.47836 4.56334 4.69836 4.74061 4.85735 4.96259 5.00641 5.10117 5.12813 5.18490 5.23936 5.28486 5.31773 5.33570 5.35747 5.38884 5.64571 5.78905 5.88889 5.98049 6.04399 6.29393 6.33700 6.40177 6.50568 6.92711 6.94017 7.44482 8.96837 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.002237 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.376035 B =12512.180095 C =12952.107476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.283 3.717 3 C -0.058 4.058 4 C -0.048 4.048 5 C -0.149 4.149 6 C 0.183 3.817 7 N -0.654 5.654 8 C 0.488 3.512 9 O -0.546 6.546 10 C 0.091 3.909 11 H 0.130 0.870 12 N -0.818 5.818 13 C -0.096 4.096 14 C -0.084 4.084 15 C 0.021 3.979 16 C -0.537 4.537 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.261 1.261 24 C -0.081 4.081 25 C -0.133 4.133 26 C -0.167 4.167 27 C -0.166 4.166 28 C -0.044 4.044 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.429 0.571 32 H 0.351 0.649 33 H 0.348 0.652 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.056 0.944 38 H -0.017 1.017 39 H -0.007 1.007 40 H 0.262 0.738 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.252 15.015 -10.497 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.031 4.031 3 C -0.062 4.062 4 C -0.069 4.069 5 C -0.169 4.169 6 C 0.086 3.914 7 N -0.299 5.299 8 C 0.275 3.725 9 O -0.423 6.423 10 C -0.025 4.025 11 H 0.148 0.852 12 N -0.347 5.347 13 C -0.134 4.134 14 C -0.122 4.122 15 C -0.016 4.016 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.185 1.185 24 C -0.084 4.084 25 C -0.152 4.152 26 C -0.203 4.203 27 C -0.202 4.202 28 C -0.064 4.064 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.269 0.731 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.002 0.998 39 H 0.011 0.989 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.115 0.885 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.584 14.818 -9.966 25.061 hybrid contribution 0.394 -0.478 0.253 0.669 sum -17.189 14.340 -9.713 24.402 Atomic orbital electron populations 1.81282 1.13217 1.11044 1.08710 1.25789 0.92601 0.92208 0.92501 1.15921 0.83436 1.11166 0.95707 1.21154 0.93293 0.95166 0.97252 1.21293 0.94086 1.02771 0.98748 1.17981 0.83374 0.95907 0.94184 1.43695 1.04435 1.67207 1.14529 1.22811 0.92766 0.74699 0.82240 1.90655 1.70517 1.46008 1.35077 1.21669 0.85685 0.96450 0.98695 0.85226 1.59021 1.63515 1.07747 1.04430 1.21487 0.97436 0.92626 1.01892 1.21281 0.93488 0.96172 1.01220 1.19062 0.94793 0.93369 0.94424 1.21747 0.94025 0.93427 1.48286 0.92131 1.25976 1.03221 0.95816 0.95084 1.70101 1.37211 0.99320 1.50965 0.85503 0.79767 0.77560 0.78562 1.20151 1.20964 1.18502 1.18813 0.92752 1.03613 0.93204 1.20943 1.00575 1.07055 0.86577 1.23175 1.00312 0.98256 0.98603 1.23166 1.04114 0.93434 0.99526 1.20997 0.92784 0.95499 0.97152 0.83594 0.84208 0.73138 0.83480 0.83835 0.93270 0.90671 0.92371 0.92485 0.99818 0.98872 0.92975 0.85885 0.87857 0.87103 0.87154 0.88541 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.17 18.54 19.00 0.35 -10.82 16 2 C 0.28 5.41 15.33 88.33 1.35 6.76 16 3 C -0.06 -0.91 5.74 -21.29 -0.12 -1.03 16 4 C -0.05 -0.79 9.75 22.51 0.22 -0.57 16 5 C -0.15 -2.90 8.69 22.35 0.19 -2.71 16 6 C 0.18 3.13 6.41 38.33 0.25 3.38 16 7 N -0.65 -10.23 5.06 -303.46 -1.54 -11.77 16 8 C 0.49 9.91 6.87 87.66 0.60 10.52 16 9 O -0.55 -14.09 13.39 -3.00 -0.04 -14.13 16 10 C 0.09 1.87 3.15 44.17 0.14 2.01 16 11 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 12 N -0.82 -17.81 8.44 -171.79 -1.45 -19.26 16 13 C -0.10 -2.70 4.84 30.60 0.15 -2.55 16 14 C -0.08 -3.10 5.04 30.60 0.15 -2.94 16 15 C 0.02 1.04 4.97 29.85 0.15 1.19 16 16 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 19 N -0.94 -56.45 13.29 21.45 0.28 -56.16 16 20 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 24 C -0.08 -1.08 5.62 -19.79 -0.11 -1.19 16 25 C -0.13 -1.24 5.41 -11.54 -0.06 -1.30 16 26 C -0.17 -1.19 9.86 30.59 0.30 -0.89 16 27 C -0.17 -1.34 10.16 30.59 0.31 -1.03 16 28 C -0.04 -0.56 8.99 22.51 0.20 -0.36 16 29 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.14 3.26 5.77 -2.91 -0.02 3.25 16 31 H 0.43 4.51 7.35 -92.71 -0.68 3.83 16 32 H 0.35 6.27 9.06 -89.69 -0.81 5.45 16 33 H 0.35 8.19 8.58 -89.70 -0.77 7.42 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.19 7.75 -2.38 -0.02 2.17 16 38 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.12 0.93 7.16 -2.39 -0.02 0.91 16 42 H 0.10 0.64 6.17 -2.39 -0.01 0.62 16 43 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.15 1.37 6.01 -2.91 -0.02 1.35 16 Total: -1.00 -70.83 390.22 2.84 -67.99 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -1.22 Total: 18.52 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 4.42 Total: -20.09 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -2.35 Total: -98.01 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.04 Total: -14.13 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.83 2.84 -67.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.498 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds