Wall clock time and date at job start Sat Apr 11 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39555 * 120.11945 * 36.32302 * 3 2 1 5 5 C 1.38580 * 119.77330 * 180.23102 * 4 3 2 6 6 N 1.39950 * 119.99705 * 179.77167 * 5 4 3 7 7 C 1.34787 * 119.99682 * 326.48199 * 6 5 4 8 8 O 1.21286 * 119.99825 * 354.71606 * 7 6 5 9 9 C 1.50696 * 119.99897 * 174.72843 * 7 6 5 10 10 H 1.08997 * 109.47407 * 39.99311 * 9 7 6 11 11 N 1.46892 * 109.47356 * 159.99578 * 9 7 6 12 12 C 1.53001 * 109.47002 * 279.99519 * 9 7 6 13 13 C 1.53001 * 109.47383 * 175.00169 * 12 9 7 14 14 C 1.52993 * 109.47158 * 179.97438 * 13 12 9 15 15 C 1.50705 * 109.46907 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00161 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99641 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00355 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99690 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47045 * 60.00174 * 19 17 15 21 21 H 1.48497 * 109.47156 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47287 * 300.00210 * 19 17 15 23 23 C 1.38997 * 120.00727 * 359.49137 * 5 4 3 24 24 C 1.38215 * 120.23816 * 0.25759 * 23 5 4 25 25 C 1.38009 * 120.22695 * 359.97438 * 24 23 5 26 26 C 1.50700 * 120.00511 * 179.97438 * 25 24 23 27 27 C 1.53001 * 117.49873 * 8.62039 * 26 25 24 28 28 C 1.52998 * 59.99961 * 252.51236 * 27 26 25 29 29 H 1.07998 * 120.10932 * 0.02562 * 4 3 2 30 30 H 0.96997 * 120.00821 * 146.47366 * 6 5 4 31 31 H 1.00904 * 111.00432 * 59.99256 * 11 9 7 32 32 H 1.00898 * 111.00562 * 183.95608 * 11 9 7 33 33 H 1.09002 * 109.47077 * 55.00122 * 12 9 7 34 34 H 1.09004 * 109.46746 * 295.00128 * 12 9 7 35 35 H 1.09003 * 109.47281 * 59.99440 * 13 12 9 36 36 H 1.09003 * 109.46700 * 300.00005 * 13 12 9 37 37 H 1.09003 * 109.47349 * 299.99644 * 14 13 12 38 38 H 1.09002 * 109.47159 * 60.00039 * 14 13 12 39 39 H 0.97001 * 119.99761 * 179.97438 * 18 17 15 40 40 H 1.08005 * 119.88124 * 180.23527 * 23 5 4 41 41 H 1.07997 * 119.88621 * 180.02562 * 24 23 5 42 42 H 1.09006 * 115.55243 * 154.33126 * 26 25 24 43 43 H 1.08998 * 117.49940 * 359.97438 * 27 26 25 44 44 H 1.09000 * 117.50030 * 145.02455 * 27 26 25 45 45 H 1.09007 * 117.49800 * 252.51448 * 28 27 26 46 46 H 1.09000 * 117.50112 * 107.48911 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2686 -0.9716 -0.7150 5 6 4.6544 -0.9671 -0.7062 6 7 5.3618 -1.9428 -1.4177 7 6 4.8606 -3.1887 -1.5330 8 8 3.8460 -3.4913 -0.9414 9 6 5.5611 -4.2056 -2.3967 10 1 6.6393 -4.1102 -2.2687 11 7 5.1390 -5.5564 -2.0030 12 6 5.1985 -3.9653 -3.8636 13 6 6.0047 -4.9160 -4.7507 14 6 5.6416 -4.6760 -6.2174 15 6 6.4362 -5.6121 -7.0913 16 1 7.1304 -6.3087 -6.6451 17 6 6.2761 -5.5797 -8.4603 18 7 5.4304 -4.7317 -9.0037 19 14 7.2616 -6.7395 -9.5435 20 1 6.9477 -8.1443 -9.1787 21 1 6.9091 -6.5067 -10.9672 22 1 8.7120 -6.4891 -9.3459 23 6 5.3419 0.0098 0.0046 24 6 4.6483 0.9760 0.7086 25 6 3.2682 0.9779 0.7104 26 6 2.5170 2.0334 1.4802 27 6 3.3281 3.1887 2.0705 28 6 2.7534 2.1091 2.9899 29 1 2.7327 -1.7269 -1.2706 30 1 6.2127 -1.7225 -1.8279 31 1 4.1424 -5.6703 -2.1127 32 1 5.6427 -6.2588 -2.5236 33 1 5.4305 -2.9343 -4.1310 34 1 4.1337 -4.1476 -4.0092 35 1 5.7728 -5.9470 -4.4833 36 1 7.0695 -4.7336 -4.6051 37 1 4.5769 -4.8587 -6.3628 38 1 5.8733 -3.6451 -6.4851 39 1 5.3181 -4.7088 -9.9669 40 1 6.4219 0.0136 0.0070 41 1 5.1882 1.7326 1.2585 42 1 1.5141 2.2566 1.1160 43 1 4.4050 3.1850 1.9025 44 1 2.8589 4.1722 2.0947 45 1 1.9061 2.3825 3.6189 46 1 3.4523 1.3955 3.4263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:56:25 Heat of formation + Delta-G solvation = 7.342783 kcal Electronic energy + Delta-G solvation = -26030.128875 eV Core-core repulsion = 22304.905651 eV Total energy + Delta-G solvation = -3725.223224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83270 -40.48060 -38.06506 -37.72443 -37.26092 -35.50160 -35.26958 -32.99635 -32.40167 -30.87387 -29.35995 -27.12615 -25.19321 -25.15453 -23.96318 -23.17953 -21.96086 -21.63948 -21.02343 -20.22818 -18.60300 -18.44450 -17.40712 -17.34580 -16.88879 -16.54056 -16.15021 -15.99434 -15.88816 -15.60454 -15.29080 -15.17825 -14.85334 -14.62513 -14.27536 -14.25482 -14.05026 -13.82465 -13.67915 -13.65077 -13.50406 -12.91621 -12.75597 -12.54504 -12.45045 -12.37470 -12.30620 -12.17425 -12.03954 -11.48397 -11.43378 -11.33178 -11.27380 -10.99158 -10.75422 -10.54978 -10.01423 -9.68852 -9.04625 -8.19920 -6.31108 -0.31501 0.17227 1.40802 1.43177 1.43336 1.48967 1.51161 1.87856 1.96764 2.41058 2.65142 2.78332 3.10978 3.13654 3.48306 3.61018 3.69040 3.79640 3.95826 3.98006 4.06338 4.09033 4.16202 4.26855 4.37024 4.41372 4.48852 4.56698 4.70041 4.77370 4.85359 4.92924 5.02160 5.10789 5.14979 5.19705 5.20467 5.25342 5.28387 5.39370 5.43173 5.53081 5.74360 5.84014 5.86192 6.03715 6.24148 6.31702 6.39994 6.47830 6.87365 7.08768 7.38772 8.91352 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001991 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.649641 B =14059.749451 C =14203.722836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.276 3.724 3 C -0.029 4.029 4 C -0.089 4.089 5 C 0.133 3.867 6 N -0.659 5.659 7 C 0.523 3.477 8 O -0.549 6.549 9 C 0.088 3.912 10 H 0.134 0.866 11 N -0.833 5.833 12 C -0.137 4.137 13 C -0.094 4.094 14 C 0.022 3.978 15 C -0.541 4.541 16 H 0.065 0.935 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.963 3.037 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.263 1.263 23 C -0.088 4.088 24 C -0.094 4.094 25 C -0.013 4.013 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.165 4.165 29 H 0.115 0.885 30 H 0.432 0.568 31 H 0.344 0.656 32 H 0.359 0.641 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.069 0.931 37 H -0.019 1.019 38 H -0.007 1.007 39 H 0.262 0.738 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 15.647 24.281 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.038 4.038 3 C -0.033 4.033 4 C -0.112 4.112 5 C 0.039 3.961 6 N -0.307 5.307 7 C 0.311 3.689 8 O -0.425 6.425 9 C -0.027 4.027 10 H 0.151 0.849 11 N -0.365 5.365 12 C -0.177 4.177 13 C -0.132 4.132 14 C -0.015 4.015 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.016 4.016 26 C -0.173 4.173 27 C -0.185 4.185 28 C -0.202 4.202 29 H 0.133 0.867 30 H 0.273 0.727 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.000 1.000 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.110 0.890 43 H 0.143 0.857 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.056 15.594 25.219 29.808 hybrid contribution -0.115 -0.831 -2.516 2.652 sum 2.941 14.763 22.703 27.240 Atomic orbital electron populations 1.81217 1.13203 1.09446 1.10045 1.25975 0.93083 0.92339 0.92425 1.15674 0.83309 0.99615 1.04739 1.20995 0.94088 0.97233 0.98869 1.17663 0.90103 0.91828 0.96519 1.43415 1.25337 1.08573 1.53349 1.21075 0.84563 0.82843 0.80431 1.90697 1.26116 1.79416 1.46276 1.21386 1.01681 0.89012 0.90623 0.84881 1.58715 1.11684 1.02446 1.63700 1.22258 0.99935 1.01571 0.93896 1.21429 0.99534 0.98154 0.94068 1.19015 0.94532 0.95293 0.92662 1.21714 1.23799 1.20178 0.92191 0.91691 1.26010 0.96546 0.97449 1.00147 1.70097 1.37538 1.38360 1.11584 0.85526 0.79333 0.79209 0.77145 1.19304 1.21312 1.18794 1.21520 1.02296 0.93205 0.93866 1.21142 0.91587 0.99294 0.99182 1.19259 0.94197 0.93008 0.95158 1.21026 0.99989 0.99571 0.96696 1.23242 1.01008 0.93455 1.00831 1.23156 1.04029 1.02741 0.90229 0.86677 0.72746 0.84252 0.82533 0.90596 0.93666 0.92678 0.91251 1.00016 0.98862 0.92923 0.80725 0.80748 0.88952 0.85741 0.87469 0.88255 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.34 18.54 19.00 0.35 -13.99 16 2 C 0.28 7.39 13.92 88.33 1.23 8.62 16 3 C -0.03 -0.64 5.73 -21.38 -0.12 -0.76 16 4 C -0.09 -2.08 8.36 22.67 0.19 -1.89 16 5 C 0.13 2.33 6.27 38.11 0.24 2.56 16 6 N -0.66 -10.92 5.34 -303.60 -1.62 -12.55 16 7 C 0.52 12.53 6.81 87.65 0.60 13.13 16 8 O -0.55 -17.51 13.95 -3.05 -0.04 -17.56 16 9 C 0.09 1.97 3.21 44.17 0.14 2.12 16 10 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 11 N -0.83 -20.31 8.93 -171.82 -1.54 -21.85 16 12 C -0.14 -3.87 4.84 30.59 0.15 -3.72 16 13 C -0.09 -3.28 4.92 30.59 0.15 -3.13 16 14 C 0.02 1.10 4.97 29.85 0.15 1.25 16 15 C -0.54 -29.43 9.11 25.60 0.23 -29.19 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.94 -56.34 13.29 21.45 0.28 -56.05 16 19 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 C -0.09 -0.85 9.95 22.45 0.22 -0.62 16 24 C -0.09 -0.84 9.28 22.21 0.21 -0.64 16 25 C -0.01 -0.19 5.65 -19.58 -0.11 -0.30 16 26 C -0.15 -2.04 5.53 -11.54 -0.06 -2.11 16 27 C -0.15 -1.00 9.86 30.59 0.30 -0.70 16 28 C -0.16 -1.55 10.16 30.59 0.31 -1.24 16 29 H 0.12 3.37 6.43 -2.91 -0.02 3.35 16 30 H 0.43 3.99 8.82 -92.71 -0.82 3.17 16 31 H 0.34 9.23 8.58 -89.69 -0.77 8.46 16 32 H 0.36 8.04 7.55 -89.70 -0.68 7.36 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 35 H 0.05 1.85 6.87 -2.39 -0.02 1.84 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 37 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.18 0.32 6.01 -2.91 -0.02 0.30 16 42 H 0.09 1.57 7.35 -2.38 -0.02 1.55 16 43 H 0.12 0.28 6.17 -2.39 -0.01 0.27 16 44 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 46 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -76.28 390.10 2.53 -73.75 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -1.22 Total: 19.46 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 4.28 Total: -16.39 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -2.52 Total: -104.43 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.04 Total: -17.56 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -76.28 2.53 -73.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.097 kcal (2) G-P(sol) polarization free energy of solvation -76.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds