Wall clock time and date at job start Sat Apr 11 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39545 * 120.11745 * 276.07119 * 3 2 1 5 5 C 1.38584 * 119.77171 * 179.97438 * 4 3 2 6 6 N 1.39955 * 119.99304 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00180 * 324.91350 * 6 5 4 8 8 O 1.21288 * 120.00087 * 4.61398 * 7 6 5 9 9 C 1.50701 * 120.00347 * 184.61648 * 7 6 5 10 10 H 1.08996 * 109.46811 * 320.00547 * 9 7 6 11 11 N 1.46891 * 109.47223 * 199.99869 * 9 7 6 12 12 C 1.53004 * 109.46961 * 79.99939 * 9 7 6 13 13 C 1.53002 * 109.46998 * 185.00231 * 12 9 7 14 14 C 1.53004 * 109.46998 * 179.97438 * 13 12 9 15 15 C 1.50696 * 109.46755 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00679 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99862 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99673 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00203 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46974 * 90.00129 * 19 17 15 21 21 H 1.48499 * 109.47230 * 209.99804 * 19 17 15 22 22 H 1.48493 * 109.47037 * 329.99864 * 19 17 15 23 23 C 1.38996 * 120.01152 * 359.97438 * 5 4 3 24 24 C 1.38222 * 120.23103 * 0.02562 * 23 5 4 25 25 C 1.38004 * 120.23097 * 0.25032 * 24 23 5 26 26 C 1.50702 * 120.00912 * 179.74356 * 25 24 23 27 27 C 1.53001 * 117.49468 * 8.62765 * 26 25 24 28 28 C 1.52998 * 117.49617 * 300.00373 * 26 25 24 29 29 H 1.07993 * 120.11375 * 359.96165 * 4 3 2 30 30 H 0.97004 * 119.99769 * 144.91980 * 6 5 4 31 31 H 1.00906 * 111.00324 * 176.04427 * 11 9 7 32 32 H 1.00900 * 111.00561 * 300.00424 * 11 9 7 33 33 H 1.09003 * 109.46722 * 305.00440 * 12 9 7 34 34 H 1.09000 * 109.47116 * 64.99861 * 12 9 7 35 35 H 1.08998 * 109.47164 * 300.00308 * 13 12 9 36 36 H 1.09001 * 109.47014 * 60.00087 * 13 12 9 37 37 H 1.09003 * 109.46722 * 300.00209 * 14 13 12 38 38 H 1.09000 * 109.47116 * 59.99630 * 14 13 12 39 39 H 0.97003 * 119.99745 * 180.02562 * 18 17 15 40 40 H 1.07998 * 119.88465 * 180.02562 * 23 5 4 41 41 H 1.08001 * 119.88038 * 179.97438 * 24 23 5 42 42 H 1.09000 * 115.54844 * 154.32759 * 26 25 24 43 43 H 1.09001 * 117.50006 * 359.97438 * 27 26 25 44 44 H 1.08999 * 117.49849 * 145.01969 * 27 26 25 45 45 H 1.09002 * 117.49626 * 214.97133 * 28 26 25 46 46 H 1.08996 * 117.50370 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 -0.1267 1.2003 5 6 4.6540 -0.1257 1.1919 6 7 5.3610 -0.2526 2.3931 7 6 4.8772 0.3027 3.5217 8 8 3.7898 0.8399 3.5154 9 6 5.6872 0.2562 4.7917 10 1 6.1686 -0.7177 4.8801 11 7 4.8029 0.4718 5.9446 12 6 6.7549 1.3515 4.7560 13 6 7.6559 1.2258 5.9862 14 6 8.7239 2.3207 5.9501 15 6 9.6117 2.1964 7.1615 16 1 9.4319 1.4150 7.8849 17 6 10.6529 3.0811 7.3467 18 7 10.8716 4.0330 6.4660 19 14 11.7530 2.9275 8.8486 20 1 12.8964 2.0331 8.5353 21 1 12.2637 4.2695 9.2274 22 1 10.9735 2.3579 9.9769 23 6 5.3419 0.0012 -0.0092 24 6 4.6486 0.1274 -1.1983 25 6 3.2686 0.1333 -1.2007 26 6 2.5177 0.2770 -2.4994 27 6 3.3284 0.2091 -3.7952 28 6 2.7590 1.5467 -3.3181 29 1 2.7321 -0.2255 2.1325 30 1 6.1994 -0.7402 2.4132 31 1 5.3108 0.3813 6.8119 32 1 4.3444 1.3687 5.8860 33 1 7.3557 1.2438 3.8529 34 1 6.2727 2.3291 4.7571 35 1 7.0549 1.3334 6.8892 36 1 8.1380 0.2482 5.9850 37 1 9.3247 2.2126 5.0470 38 1 8.2421 3.2985 5.9510 39 1 11.6044 4.6551 6.5961 40 1 6.4219 0.0013 -0.0134 41 1 5.1888 0.2261 -2.1282 42 1 1.5133 -0.1462 -2.5110 43 1 4.4048 0.0610 -3.7084 44 1 2.8573 -0.2588 -4.6597 45 1 1.9134 1.9588 -3.8688 46 1 3.4611 2.2780 -2.9177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:56:28 Heat of formation + Delta-G solvation = 28.663269 kcal Electronic energy + Delta-G solvation = -26009.329386 eV Core-core repulsion = 22285.030687 eV Total energy + Delta-G solvation = -3724.298698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02527 -39.69471 -37.37324 -36.76256 -36.08371 -34.69413 -33.44187 -31.69235 -31.33256 -30.14573 -27.91911 -25.77906 -24.43687 -24.14809 -22.82970 -22.54873 -21.01513 -20.31955 -20.22272 -19.43575 -17.64738 -16.83232 -16.53785 -16.40323 -16.02290 -15.32353 -15.02195 -14.98345 -14.78576 -14.54645 -14.34445 -14.17128 -13.95053 -13.49941 -13.37792 -13.29601 -12.98514 -12.78090 -12.56095 -12.21254 -12.09752 -11.92741 -11.77017 -11.68040 -11.39754 -11.31587 -10.89432 -10.86497 -10.78535 -10.62557 -10.27409 -9.95366 -9.85153 -9.48431 -9.30062 -9.20856 -8.62052 -8.43177 -8.36550 -6.08250 -4.11426 0.40138 0.88102 2.33423 2.42003 2.68712 2.81781 3.26060 3.28649 3.33037 3.35818 3.61503 3.69504 4.06747 4.33893 4.38290 4.46942 4.53446 4.57654 4.68149 4.70219 4.85637 5.04835 5.06752 5.11391 5.17688 5.20869 5.27724 5.37247 5.46694 5.59653 5.63864 5.67930 5.78535 5.83699 5.89556 6.03364 6.06565 6.14602 6.47119 6.54776 6.63749 6.93466 6.97566 7.19362 7.25962 7.47990 7.56132 7.68148 7.90381 7.93909 8.31965 8.95675 9.53420 11.02866 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002035 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.420788 B =13753.753376 C =14728.550656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.262 3.738 3 C -0.009 4.009 4 C -0.070 4.070 5 C 0.147 3.853 6 N -0.675 5.675 7 C 0.525 3.475 8 O -0.512 6.512 9 C 0.078 3.922 10 H 0.104 0.896 11 N -0.830 5.830 12 C -0.147 4.147 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.109 4.109 24 C -0.104 4.104 25 C -0.021 4.021 26 C -0.129 4.129 27 C -0.170 4.170 28 C -0.165 4.165 29 H 0.151 0.849 30 H 0.416 0.584 31 H 0.355 0.645 32 H 0.350 0.650 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.261 0.739 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 -10.441 -18.879 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.053 4.053 3 C -0.013 4.013 4 C -0.093 4.093 5 C 0.053 3.947 6 N -0.322 5.322 7 C 0.313 3.687 8 O -0.385 6.385 9 C -0.037 4.037 10 H 0.122 0.878 11 N -0.363 5.363 12 C -0.187 4.187 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.024 4.024 26 C -0.147 4.147 27 C -0.207 4.207 28 C -0.202 4.202 29 H 0.169 0.831 30 H 0.253 0.747 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.276 -10.519 -19.071 26.041 hybrid contribution 2.256 0.638 1.059 2.573 sum -12.020 -9.881 -18.012 23.802 Atomic orbital electron populations 1.81234 1.11928 1.08692 1.07499 1.25531 0.92553 0.93763 0.93495 1.15603 0.84433 1.07615 0.93687 1.21313 0.92937 0.97325 0.97739 1.17531 0.90741 1.00532 0.85923 1.43586 1.26329 1.55484 1.06753 1.21041 0.86519 0.76493 0.84660 1.90678 1.20715 1.42610 1.84498 1.21431 0.91982 1.01539 0.88766 0.87828 1.58692 1.33340 1.40564 1.03725 1.22434 0.96912 0.97766 1.01609 1.21660 0.97302 1.01340 0.94354 1.19078 0.92403 0.92845 0.97174 1.21230 1.13130 1.14193 1.07588 0.92664 1.25040 0.97645 0.95283 0.96531 1.69962 1.30764 1.17267 1.35384 0.86590 0.80847 0.77375 0.83172 1.20634 1.21205 1.19854 1.21180 1.00680 1.00123 0.91027 1.20737 0.92586 1.00685 0.98206 1.19058 0.93176 0.98399 0.91804 1.21043 1.00047 1.04212 0.89397 1.23095 1.00201 1.00771 0.96617 1.23075 1.03707 0.90958 1.02445 0.83099 0.74732 0.82990 0.83575 0.91420 0.91587 0.93255 0.92934 0.96609 0.96694 0.92935 0.84453 0.84414 0.87095 0.87897 0.88223 0.88287 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.74 18.54 41.84 0.78 -4.97 16 2 C 0.26 3.12 13.91 -22.47 -0.31 2.81 16 3 C -0.01 -0.10 5.73 -106.96 -0.61 -0.71 16 4 C -0.07 -0.77 8.40 -38.97 -0.33 -1.10 16 5 C 0.15 1.40 6.29 -83.74 -0.53 0.87 16 6 N -0.68 -6.20 5.34 -9.89 -0.05 -6.25 16 7 C 0.52 6.45 6.92 -10.99 -0.08 6.38 16 8 O -0.51 -7.90 13.68 5.55 0.08 -7.82 16 9 C 0.08 0.93 3.21 -68.87 -0.22 0.71 16 10 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 11 N -0.83 -10.44 8.93 -5.66 -0.05 -10.49 16 12 C -0.15 -2.10 4.84 -26.73 -0.13 -2.23 16 13 C -0.11 -1.92 4.92 -26.73 -0.13 -2.06 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 19 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 C -0.11 -0.78 9.96 -39.31 -0.39 -1.17 16 24 C -0.10 -0.70 9.28 -39.67 -0.37 -1.07 16 25 C -0.02 -0.17 5.65 -104.18 -0.59 -0.76 16 26 C -0.13 -0.93 5.53 -91.77 -0.51 -1.44 16 27 C -0.17 -0.87 9.86 -26.73 -0.26 -1.14 16 28 C -0.16 -1.01 10.16 -26.73 -0.27 -1.28 16 29 H 0.15 1.93 6.22 -52.49 -0.33 1.60 16 30 H 0.42 2.58 8.82 -40.82 -0.36 2.22 16 31 H 0.35 4.20 7.55 -39.29 -0.30 3.91 16 32 H 0.35 4.62 8.58 -39.29 -0.34 4.29 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.85 6.87 -51.93 -0.36 0.49 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.14 0.61 6.01 -52.49 -0.32 0.29 16 42 H 0.11 0.89 7.34 -51.93 -0.38 0.51 16 43 H 0.10 0.41 6.17 -51.93 -0.32 0.09 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -32.75 389.79 -9.40 -42.16 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.46 Total: 5.70 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -5.28 Total: -14.76 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 1.41 Total: -47.13 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.75 -9.40 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.820 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds