Wall clock time and date at job start Sat Apr 11 2020 01:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36543 * 120.08770 * 2 1 4 4 C 1.40722 * 118.23748 * 180.24204 * 3 2 1 5 5 C 1.40426 * 121.27380 * 179.80880 * 4 3 2 6 6 C 1.36128 * 119.64925 * 179.97438 * 5 4 3 7 7 C 1.39445 * 120.91703 * 359.97438 * 6 5 4 8 8 C 1.35994 * 121.09051 * 0.02562 * 7 6 5 9 9 C 1.40836 * 119.73482 * 359.96122 * 8 7 6 10 10 N 1.33242 * 120.99226 * 180.02562 * 9 8 7 11 11 C 1.31908 * 121.28934 * 179.97438 * 10 9 8 12 12 C 1.48279 * 119.23206 * 179.97438 * 11 10 9 13 13 O 1.21501 * 120.00227 * 104.51904 * 12 11 10 14 14 N 1.34779 * 119.99963 * 284.50643 * 12 11 10 15 15 C 1.46501 * 119.99736 * 4.51679 * 14 12 11 16 16 C 1.46497 * 120.00154 * 184.50841 * 14 12 11 17 17 C 1.52997 * 109.47426 * 270.00512 * 16 14 12 18 18 H 1.09003 * 109.47104 * 295.00413 * 17 16 14 19 19 C 1.52999 * 109.47495 * 174.99666 * 17 16 14 20 20 N 1.46507 * 109.47214 * 54.99780 * 17 16 14 21 21 C 1.36931 * 120.00173 * 205.00290 * 20 17 16 22 22 H 1.08001 * 120.00120 * 359.97438 * 21 20 17 23 23 C 1.38816 * 119.99838 * 180.02562 * 21 20 17 24 24 N 1.31616 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99780 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47379 * 89.99993 * 25 23 21 27 27 H 1.48500 * 109.46991 * 210.00035 * 25 23 21 28 28 H 1.48504 * 109.47246 * 329.99503 * 25 23 21 29 29 H 1.09009 * 109.46658 * 265.09228 * 1 2 3 30 30 H 1.09002 * 109.47733 * 25.09246 * 1 2 3 31 31 H 1.09001 * 109.47474 * 145.09917 * 1 2 3 32 32 H 1.07993 * 120.88374 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.17244 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.54009 * 179.97438 * 6 5 4 35 35 H 1.07994 * 119.45020 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.12762 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.47023 * 265.28665 * 15 14 12 38 38 H 1.08998 * 109.47610 * 25.29089 * 15 14 12 39 39 H 1.09001 * 109.46761 * 145.29322 * 15 14 12 40 40 H 1.08996 * 109.47135 * 150.00076 * 16 14 12 41 41 H 1.08998 * 109.47074 * 30.00383 * 16 14 12 42 42 H 1.08993 * 109.47012 * 300.00547 * 19 17 16 43 43 H 1.09003 * 109.46889 * 60.00082 * 19 17 16 44 44 H 1.09003 * 109.47354 * 179.97438 * 19 17 16 45 45 H 0.96999 * 119.99279 * 25.00035 * 20 17 16 46 46 H 0.97000 * 120.00371 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1915 1.1814 0.0000 4 6 3.5980 1.1360 -0.0052 5 6 4.3653 2.3121 -0.0096 6 6 5.7241 2.2296 -0.0140 7 6 6.3668 0.9920 -0.0139 8 6 5.6569 -0.1679 -0.0098 9 6 4.2492 -0.1253 -0.0048 10 7 3.5289 -1.2463 -0.0001 11 6 2.2102 -1.2132 0.0051 12 6 1.4539 -2.4887 0.0095 13 8 0.9212 -2.8756 1.0306 14 7 1.3572 -3.2187 -1.1193 15 6 2.0805 -2.8040 -2.3240 16 6 0.5290 -4.4269 -1.1416 17 6 1.3774 -5.6343 -0.7378 18 1 2.1515 -5.8014 -1.4869 19 6 0.4862 -6.8741 -0.6400 20 7 2.0031 -5.3789 0.5621 21 6 3.1620 -6.0237 0.9027 22 1 3.6147 -6.7210 0.2133 23 6 3.7544 -5.7820 2.1346 24 7 3.2025 -4.9326 2.9750 25 14 5.3350 -6.6622 2.5995 26 1 6.5000 -5.8533 2.1595 27 1 5.3860 -6.8429 4.0726 28 1 5.3756 -7.9903 1.9363 29 1 -0.3633 -0.0879 1.0240 30 1 -0.3635 0.9307 -0.4358 31 1 -0.3634 -0.8428 -0.5880 32 1 1.6675 2.1257 0.0004 33 1 3.8800 3.2769 -0.0093 34 1 6.3126 3.1352 -0.0178 35 1 7.4460 0.9542 -0.0171 36 1 6.1706 -1.1179 -0.0093 37 1 1.4217 -2.2090 -2.9566 38 1 2.9476 -2.2077 -2.0401 39 1 2.4101 -3.6868 -2.8718 40 1 0.1355 -4.5791 -2.1466 41 1 -0.2981 -4.3134 -0.4409 42 1 -0.2877 -6.7070 0.1091 43 1 0.0208 -7.0642 -1.6071 44 1 1.0908 -7.7345 -0.3527 45 1 1.5962 -4.7529 1.1813 46 1 3.6166 -4.7634 3.8356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755597432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:57:30 Heat of formation + Delta-G solvation = 17.400863 kcal Electronic energy + Delta-G solvation = -28554.634033 eV Core-core repulsion = 24829.846960 eV Total energy + Delta-G solvation = -3724.787073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.16092 -40.69083 -38.22139 -37.43673 -36.00506 -35.14794 -33.89807 -32.70493 -31.34262 -30.53371 -28.38421 -28.06476 -27.43040 -25.81041 -25.24170 -23.57788 -23.01408 -21.92318 -20.76990 -19.40564 -19.02236 -18.48937 -17.74285 -17.47001 -16.89892 -16.35599 -16.22241 -15.64571 -15.56279 -15.43705 -15.24310 -14.82012 -14.64385 -14.22819 -14.10033 -13.99192 -13.97284 -13.82212 -13.60680 -13.38304 -13.20114 -13.04019 -12.90260 -12.78555 -12.55368 -12.51865 -12.41240 -12.37925 -12.16352 -11.87825 -11.59882 -11.38129 -11.19245 -10.93670 -10.39364 -9.68014 -9.55243 -9.21136 -8.89148 -7.83895 -5.12302 -0.65709 -0.29776 0.99809 1.37282 1.41274 1.43809 1.49089 1.86560 2.08745 2.56335 2.99986 3.23015 3.45533 3.49539 3.64840 3.75101 3.85990 3.97286 4.07815 4.16537 4.20840 4.22982 4.34808 4.40322 4.49549 4.53008 4.57393 4.65857 4.68879 4.70411 4.79100 4.82511 4.90696 4.92651 5.05294 5.07219 5.09881 5.16753 5.26248 5.39226 5.44256 5.46183 5.52876 5.54914 5.70163 5.90131 6.31790 6.36940 6.80994 7.16660 7.42968 8.29807 8.52612 9.37572 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.004932 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.665449 B = 5675.716275 C = 7344.594494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.047 4.047 4 C -0.106 4.106 5 C -0.092 4.092 6 C -0.108 4.108 7 C -0.091 4.091 8 C -0.123 4.123 9 C 0.092 3.908 10 N -0.478 5.478 11 C 0.118 3.882 12 C 0.576 3.424 13 O -0.550 6.550 14 N -0.595 5.595 15 C 0.081 3.919 16 C 0.114 3.886 17 C 0.142 3.858 18 H 0.043 0.957 19 C -0.152 4.152 20 N -0.738 5.738 21 C -0.232 4.232 22 H 0.069 0.931 23 C -0.080 4.080 24 N -0.960 5.960 25 Si 0.965 3.035 26 H -0.293 1.293 27 H -0.297 1.297 28 H -0.266 1.266 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.192 0.808 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.386 0.614 46 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 19.471 -15.132 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.129 4.129 3 C -0.072 4.072 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.126 4.126 7 C -0.110 4.110 8 C -0.142 4.142 9 C -0.031 4.031 10 N -0.188 5.188 11 C -0.036 4.036 12 C 0.363 3.637 13 O -0.426 6.426 14 N -0.326 5.326 15 C -0.062 4.062 16 C -0.008 4.008 17 C 0.032 3.968 18 H 0.061 0.939 19 C -0.212 4.212 20 N -0.384 5.384 21 C -0.365 4.365 22 H 0.087 0.913 23 C -0.273 4.273 24 N -0.611 5.611 25 Si 0.795 3.205 26 H -0.221 1.221 27 H -0.224 1.224 28 H -0.190 1.190 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.209 0.791 33 H 0.190 0.810 34 H 0.187 0.813 35 H 0.174 0.826 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.223 0.777 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.692 18.355 -14.633 23.535 hybrid contribution 0.691 -0.466 1.221 1.478 sum -1.001 17.889 -13.412 22.381 Atomic orbital electron populations 1.20798 0.87942 1.04535 1.02912 1.20705 0.99047 0.91944 1.01185 1.21754 0.92037 0.98973 0.94445 1.19270 0.95206 0.94449 1.01839 1.21421 0.94343 0.97190 0.98102 1.21439 0.94933 0.98520 0.97702 1.21286 1.01701 0.91461 0.96580 1.20991 0.91148 1.00279 1.01737 1.19369 0.95017 0.88462 1.00232 1.67921 1.07009 1.32267 1.11601 1.21192 0.90147 0.94101 0.98173 1.18224 0.79256 0.82968 0.83297 1.90750 1.48787 1.70533 1.32518 1.47588 1.48211 1.25282 1.11538 1.21910 0.96534 1.01662 0.86060 1.21942 0.92581 0.82689 1.03606 1.21002 0.94022 0.93891 0.87839 0.93938 1.22232 0.99249 0.98288 1.01417 1.43041 1.26876 1.51926 1.16520 1.19565 1.00483 1.17454 0.98987 0.91295 1.25541 1.02564 1.01504 0.97646 1.69973 1.41903 1.40276 1.08961 0.85256 0.80132 0.78527 0.76629 1.22082 1.22426 1.19023 0.91364 0.86790 0.92348 0.79070 0.81022 0.81295 0.82599 0.86798 0.89560 0.92890 0.89795 0.85409 0.91603 0.94401 0.89789 0.94710 0.77725 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 9.51 71.24 0.68 -1.79 16 2 C -0.13 -3.75 5.89 -19.78 -0.12 -3.87 16 3 C -0.05 -1.06 9.51 22.48 0.21 -0.85 16 4 C -0.11 -2.74 5.75 -21.22 -0.12 -2.87 16 5 C -0.09 -1.55 9.77 22.31 0.22 -1.34 16 6 C -0.11 -1.67 9.96 22.07 0.22 -1.45 16 7 C -0.09 -1.88 9.94 22.04 0.22 -1.66 16 8 C -0.12 -3.81 9.99 22.38 0.22 -3.58 16 9 C 0.09 3.24 6.61 40.49 0.27 3.51 16 10 N -0.48 -20.67 9.18 -177.77 -1.63 -22.30 16 11 C 0.12 4.76 5.10 42.29 0.22 4.98 16 12 C 0.58 25.75 5.18 86.91 0.45 26.20 16 13 O -0.55 -29.88 14.19 -3.72 -0.05 -29.93 16 14 N -0.59 -22.04 2.77 -849.71 -2.36 -24.40 16 15 C 0.08 2.32 10.29 127.77 1.31 3.63 16 16 C 0.11 3.97 5.16 86.38 0.45 4.42 16 17 C 0.14 6.04 3.20 44.99 0.14 6.19 16 18 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 19 C -0.15 -5.62 9.49 71.98 0.68 -4.93 16 20 N -0.74 -42.18 4.52 -322.93 -1.46 -43.64 16 21 C -0.23 -14.41 9.93 84.04 0.83 -13.57 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -5.19 5.50 84.86 0.47 -4.72 16 24 N -0.96 -67.12 13.06 21.65 0.28 -66.83 16 25 Si 0.96 51.42 29.55 68.60 2.03 53.45 16 26 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 27 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 28 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.11 1.60 8.05 -2.39 -0.02 1.59 16 31 H 0.06 1.48 7.24 -2.39 -0.02 1.47 16 32 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.11 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.05 1.76 6.01 -2.39 -0.01 1.75 16 39 H 0.08 2.16 8.11 -2.39 -0.02 2.14 16 40 H 0.13 3.01 8.07 -2.39 -0.02 2.99 16 41 H 0.07 2.49 7.49 -2.39 -0.02 2.47 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.39 24.40 4.82 -92.71 -0.45 23.95 16 46 H 0.24 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -94.04 380.36 3.70 -90.34 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.54 Total: 35.03 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.35 Total: 8.28 kcal Atomic # 7 Polarization: -152.01 SS G_CDS: -5.17 Total: -157.18 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.05 Total: -29.93 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.03 Total: 53.45 kcal Total: -94.04 3.70 -90.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755597432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.740 kcal (2) G-P(sol) polarization free energy of solvation -94.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds