Wall clock time and date at job start Sat Apr 11 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47319 * 270.00298 * 3 2 1 5 5 H 1.48503 * 109.47311 * 29.99834 * 3 2 1 6 6 H 1.48498 * 109.47206 * 149.99725 * 3 2 1 7 7 C 1.38812 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99777 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99843 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99700 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46720 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46916 * 299.99518 * 10 9 7 13 13 C 1.52998 * 109.47087 * 295.00475 * 12 10 9 14 14 N 1.46502 * 109.47096 * 180.02562 * 13 12 10 15 15 C 1.34779 * 120.00350 * 179.97438 * 14 13 12 16 16 O 1.21627 * 119.99475 * 0.02562 * 15 14 13 17 17 C 1.47256 * 120.00424 * 179.97438 * 15 14 13 18 18 C 1.46694 * 126.93910 * 0.33503 * 17 15 14 19 19 C 1.34487 * 106.33088 * 180.11674 * 18 17 15 20 20 N 1.36455 * 108.85650 * 359.60056 * 19 18 17 21 21 H 0.97001 * 124.84872 * 180.26003 * 20 19 18 22 22 C 1.34653 * 110.29669 * 0.26539 * 20 19 18 23 23 C 1.52997 * 109.47346 * 59.99885 * 10 9 7 24 24 C 1.50694 * 109.47481 * 64.99879 * 23 10 9 25 25 C 1.38240 * 120.00024 * 269.73008 * 24 23 10 26 26 C 1.38237 * 119.99862 * 179.76613 * 25 24 23 27 27 C 1.38242 * 119.99854 * 0.49994 * 26 25 24 28 28 C 1.38231 * 119.99997 * 359.75506 * 27 26 25 29 29 C 1.38233 * 120.00008 * 89.99590 * 24 23 10 30 30 H 0.97009 * 120.00237 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00587 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47092 * 175.00075 * 12 10 9 33 33 H 1.08996 * 109.47008 * 54.99962 * 12 10 9 34 34 H 1.08995 * 109.47481 * 59.99838 * 13 12 10 35 35 H 1.08998 * 109.47280 * 299.99505 * 13 12 10 36 36 H 0.96998 * 119.99908 * 359.97438 * 14 13 12 37 37 H 1.07995 * 126.83555 * 359.97438 * 18 17 15 38 38 H 1.08002 * 125.57471 * 179.87081 * 19 18 17 39 39 H 1.07999 * 125.80515 * 180.02562 * 22 20 19 40 40 H 1.09000 * 109.46831 * 185.00058 * 23 10 9 41 41 H 1.09002 * 109.46770 * 305.00044 * 23 10 9 42 42 H 1.08001 * 119.99738 * 359.97438 * 25 24 23 43 43 H 1.07997 * 120.00111 * 180.23470 * 26 25 24 44 44 H 1.07993 * 119.99783 * 179.72389 * 27 26 25 45 45 H 1.08000 * 120.00132 * 179.97438 * 28 27 26 46 46 H 1.08001 * 120.00030 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 5.1838 -2.2716 0.0020 12 6 3.7421 -3.2733 1.2501 13 6 4.2235 -2.5279 2.4964 14 7 3.8697 -3.2966 3.6923 15 6 4.1966 -2.8307 4.9141 16 8 4.7849 -1.7719 5.0237 17 6 3.8405 -3.6031 6.1162 18 6 3.1412 -4.8918 6.1609 19 6 3.0307 -5.2172 7.4611 20 7 3.6128 -4.2376 8.2119 21 1 3.6673 -4.2401 9.1804 22 6 4.1005 -3.2670 7.4162 23 6 3.7430 -3.2729 -1.2484 24 6 4.2181 -2.5383 -2.4755 25 6 3.3864 -1.6291 -3.1021 26 6 3.8240 -0.9517 -4.2248 27 6 5.0895 -1.1912 -4.7270 28 6 5.9192 -2.1042 -4.1035 29 6 5.4835 -2.7777 -2.9777 30 1 -0.4851 0.8401 -0.0004 31 1 3.8647 -0.3620 0.0007 32 1 4.2175 -4.2532 1.2064 33 1 2.6600 -3.3962 1.2956 34 1 3.7481 -1.5480 2.5400 35 1 5.3056 -2.4050 2.4510 36 1 3.4002 -4.1408 3.6049 37 1 2.7839 -5.4642 5.3177 38 1 2.5622 -6.1102 7.8478 39 1 4.6107 -2.3748 7.7480 40 1 4.2184 -4.2528 -1.2047 41 1 2.6609 -3.3957 -1.2947 42 1 2.3959 -1.4456 -2.7124 43 1 3.1756 -0.2386 -4.7122 44 1 5.4297 -0.6653 -5.6068 45 1 6.9077 -2.2916 -4.4961 46 1 6.1315 -3.4915 -2.4909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755724357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:57:34 Heat of formation + Delta-G solvation = 39.920917 kcal Electronic energy + Delta-G solvation = -26877.180051 eV Core-core repulsion = 23153.369521 eV Total energy + Delta-G solvation = -3723.810530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14852 -38.97991 -38.68286 -36.59085 -34.25676 -32.41440 -31.49443 -30.83453 -30.34900 -29.54440 -29.13957 -27.11703 -24.16932 -23.39696 -22.01840 -21.91163 -20.86328 -20.55546 -19.68586 -19.12424 -18.67728 -17.79951 -16.24694 -15.79652 -15.47478 -15.30974 -14.84059 -14.64537 -14.35027 -14.21334 -13.96242 -13.92381 -13.52908 -13.13599 -12.97943 -12.92320 -12.86430 -12.75757 -12.43602 -12.16662 -11.70478 -11.59335 -11.48339 -10.97521 -10.88145 -10.77272 -10.43170 -10.35014 -10.17978 -9.92492 -9.61626 -9.42562 -8.98431 -8.91795 -8.62577 -8.40463 -8.38399 -8.12449 -7.21868 -5.73920 -3.08419 1.82688 1.86391 1.94335 2.33311 3.03478 3.43985 3.49210 3.52688 3.73805 3.82381 4.31807 4.64622 4.80611 5.01743 5.17059 5.24133 5.30914 5.36057 5.36927 5.43140 5.49787 5.58523 5.67883 5.73853 5.81577 5.93784 5.97603 6.03083 6.06687 6.12729 6.24221 6.34226 6.38211 6.52922 6.60145 6.64253 6.72228 6.77268 6.79685 6.90649 6.95384 6.97125 7.09255 7.27808 7.33207 7.58378 7.96622 8.00663 8.44939 8.67463 9.23951 9.97776 10.17355 11.43891 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003013 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.696129 B = 9290.562551 C =10518.268815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.010 3.990 3 Si 0.875 3.125 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.234 4.234 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.193 3.807 11 H 0.056 0.944 12 C -0.139 4.139 13 C 0.128 3.872 14 N -0.720 5.720 15 C 0.585 3.415 16 O -0.558 6.558 17 C -0.228 4.228 18 C -0.169 4.169 19 C -0.021 4.021 20 N -0.556 5.556 21 H 0.416 0.584 22 C 0.069 3.931 23 C -0.094 4.094 24 C -0.057 4.057 25 C -0.087 4.087 26 C -0.127 4.127 27 C -0.137 4.137 28 C -0.132 4.132 29 C -0.130 4.130 30 H 0.258 0.742 31 H 0.363 0.637 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.397 0.603 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.254 -12.355 7.535 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.705 3.295 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.364 4.364 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.179 4.179 13 C 0.005 3.995 14 N -0.369 5.369 15 C 0.373 3.627 16 O -0.437 6.437 17 C -0.238 4.238 18 C -0.193 4.193 19 C -0.149 4.149 20 N -0.151 5.151 21 H 0.252 0.748 22 C -0.067 4.067 23 C -0.133 4.133 24 C -0.057 4.057 25 C -0.105 4.105 26 C -0.145 4.145 27 C -0.155 4.155 28 C -0.150 4.150 29 C -0.148 4.148 30 H 0.068 0.932 31 H 0.195 0.805 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.230 0.770 37 H 0.163 0.837 38 H 0.185 0.815 39 H 0.193 0.807 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.156 0.844 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.418 -11.666 7.713 16.861 hybrid contribution 0.244 0.932 0.354 1.026 sum 9.662 -10.734 8.067 16.543 Atomic orbital electron populations 1.69689 1.05081 1.25689 1.57607 1.24584 0.95026 0.96893 1.02087 0.86693 0.79522 0.85536 0.77712 1.21171 1.22100 1.20179 1.18890 0.80589 0.94319 1.42617 0.89059 1.42767 1.04117 1.01834 1.89668 1.20016 0.94498 0.86806 0.90524 0.92557 1.22232 1.02835 0.97782 0.95048 1.21314 0.99179 0.96465 0.82499 1.45838 1.59822 1.25354 1.05931 1.17369 0.78402 0.84366 0.82593 1.90764 1.42829 1.23146 1.87009 1.20506 1.11575 0.98763 0.92947 1.22100 1.04442 0.96579 0.96220 1.21761 1.05742 0.95925 0.91455 1.41627 1.46071 1.18038 1.09392 0.74763 1.21835 1.00693 0.94262 0.89878 1.21132 1.02451 0.96679 0.93044 1.19846 0.93389 0.96657 0.95802 1.21412 1.01173 0.94263 0.93650 1.21188 0.96089 0.99964 0.97243 1.20994 0.94851 0.99372 1.00300 1.20945 0.99193 0.98024 0.96880 1.20995 0.96066 1.00767 0.96937 0.93210 0.80473 0.92849 0.90322 0.90049 0.92811 0.76983 0.83682 0.81503 0.80677 0.92426 0.90082 0.84396 0.86827 0.87194 0.87133 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.97 55.49 0.78 -27.46 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.87 22.14 27.74 -169.99 -4.71 17.42 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 7 C -0.23 -5.95 8.39 -15.06 -0.13 -6.07 16 8 H 0.09 2.47 6.87 -52.49 -0.36 2.11 16 9 N -0.74 -16.04 3.95 -53.42 -0.21 -16.25 16 10 C 0.19 3.35 2.67 -67.93 -0.18 3.17 16 11 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 12 C -0.14 -2.21 4.73 -26.73 -0.13 -2.33 16 13 C 0.13 2.23 5.56 -4.04 -0.02 2.20 16 14 N -0.72 -11.21 5.55 -61.44 -0.34 -11.55 16 15 C 0.58 10.02 7.81 -12.59 -0.10 9.92 16 16 O -0.56 -11.66 16.91 5.25 0.09 -11.57 16 17 C -0.23 -3.11 6.29 -103.35 -0.65 -3.76 16 18 C -0.17 -1.81 10.56 -37.49 -0.40 -2.20 16 19 C -0.02 -0.17 11.89 -16.82 -0.20 -0.37 16 20 N -0.56 -4.28 5.90 -12.85 -0.08 -4.36 16 21 H 0.42 1.65 8.96 -40.82 -0.37 1.29 16 22 C 0.07 0.77 11.69 -16.84 -0.20 0.57 16 23 C -0.09 -1.53 4.75 -27.89 -0.13 -1.66 16 24 C -0.06 -0.97 4.95 -104.63 -0.52 -1.49 16 25 C -0.09 -1.62 9.32 -39.58 -0.37 -1.99 16 26 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 27 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 28 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 29 C -0.13 -1.95 9.70 -39.58 -0.38 -2.34 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.36 8.23 5.89 -40.82 -0.24 7.99 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.40 7.11 -51.93 -0.37 1.03 16 34 H 0.08 1.74 7.75 -51.93 -0.40 1.33 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 5.06 7.60 -40.82 -0.31 4.75 16 37 H 0.15 1.29 7.70 -52.49 -0.40 0.89 16 38 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.08 1.49 7.05 -51.93 -0.37 1.12 16 42 H 0.14 2.93 7.39 -52.49 -0.39 2.54 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -34.10 384.19 -9.98 -44.08 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -6.60 Total: 17.35 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -4.69 Total: -13.45 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.15 Total: -59.62 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.10 -9.98 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755724357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.999 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds