Wall clock time and date at job start Sat Apr 11 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47429 * 2 1 4 4 C 1.53007 * 109.46812 * 239.99830 * 2 1 3 5 5 C 1.50700 * 109.47091 * 60.00112 * 4 2 1 6 6 H 1.08001 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.37869 * 119.99804 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00276 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46724 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47299 * 119.99947 * 9 7 5 12 12 H 1.48497 * 109.47313 * 240.00264 * 9 7 5 13 13 C 1.52997 * 109.47013 * 120.00194 * 2 1 3 14 14 N 1.46903 * 109.47036 * 302.65381 * 13 2 1 15 15 C 1.46903 * 110.99825 * 86.90125 * 14 13 2 16 16 C 1.50699 * 109.47111 * 59.53593 * 15 14 13 17 17 C 1.34513 * 125.79032 * 94.50818 * 16 15 14 18 18 C 1.41385 * 106.84140 * 179.89026 * 17 16 15 19 19 C 1.34505 * 106.83968 * 0.37137 * 18 17 16 20 20 O 1.34303 * 108.42479 * 359.77132 * 19 18 17 21 21 C 1.46901 * 110.99969 * 210.85365 * 14 13 2 22 22 C 1.50694 * 109.47202 * 162.68958 * 21 14 13 23 23 C 1.38239 * 120.00063 * 86.26522 * 22 21 14 24 24 C 1.38233 * 120.00156 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00187 * 0.08808 * 24 23 22 26 26 C 1.38234 * 119.99902 * 359.87321 * 25 24 23 27 27 C 1.38237 * 120.00337 * 266.25129 * 22 21 14 28 28 H 1.09005 * 109.46809 * 312.15905 * 1 2 3 29 29 H 1.08998 * 109.46789 * 72.15521 * 1 2 3 30 30 H 1.08995 * 109.47313 * 192.15532 * 1 2 3 31 31 H 1.09000 * 109.47165 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47152 * 299.99849 * 3 2 1 33 33 H 1.09001 * 109.47004 * 60.00028 * 3 2 1 34 34 H 1.09000 * 109.46908 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47111 * 300.00120 * 4 2 1 36 36 H 0.96998 * 119.99676 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47234 * 182.65624 * 13 2 1 38 38 H 1.08998 * 109.47443 * 62.65711 * 13 2 1 39 39 H 1.09002 * 109.46828 * 179.53196 * 15 14 13 40 40 H 1.08997 * 109.46996 * 299.53858 * 15 14 13 41 41 H 1.08000 * 126.58076 * 0.02562 * 17 16 15 42 42 H 1.08002 * 126.57782 * 180.16159 * 18 17 16 43 43 H 1.08003 * 125.79082 * 179.75198 * 19 18 17 44 44 H 1.09003 * 109.47104 * 42.68865 * 21 14 13 45 45 H 1.09000 * 109.47278 * 282.69348 * 21 14 13 46 46 H 1.08007 * 119.99737 * 359.70055 * 23 22 21 47 47 H 1.08005 * 119.99944 * 179.97438 * 24 23 22 48 48 H 1.07995 * 120.00358 * 179.97438 * 25 24 23 49 49 H 1.07995 * 120.00045 * 180.02562 * 26 25 24 50 50 H 1.08003 * 119.99780 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4798 6 1 0.9171 0.8674 -2.3806 7 6 1.8710 -0.4817 -3.7319 8 7 2.6271 -1.5511 -3.8526 9 14 1.2490 0.3992 -5.2572 10 1 0.4245 1.5663 -4.8530 11 1 2.4042 0.8660 -6.0651 12 1 0.4241 -0.5338 -6.0660 13 6 2.0400 -0.7213 1.2492 14 7 1.4986 -0.0668 2.4478 15 6 0.1817 -0.6156 2.7978 16 6 0.3069 -2.0946 3.0584 17 6 0.4835 -2.6692 4.2617 18 6 0.5453 -4.0649 4.0441 19 6 0.4110 -4.2591 2.7199 20 8 0.2669 -3.0623 2.1278 21 6 2.4325 -0.1791 3.5761 22 6 2.0687 0.8327 4.6320 23 6 1.1212 0.5221 5.5896 24 6 0.7878 1.4500 6.5584 25 6 1.4004 2.6891 6.5688 26 6 2.3484 2.9994 5.6117 27 6 2.6824 2.0712 4.6433 28 1 -0.3633 0.6898 0.7618 29 1 -0.3633 0.3149 -0.9782 30 1 -0.3634 -1.0046 0.2164 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7217 -1.2491 35 1 1.6766 -1.7490 -1.2493 36 1 2.8614 -1.8825 -4.7337 37 1 3.1290 -0.6802 1.2734 38 1 1.7161 -1.7618 1.2257 39 1 -0.1924 -0.1194 3.6934 40 1 -0.5119 -0.4494 1.9736 41 1 0.5608 -2.1620 5.2120 42 1 0.6785 -4.8283 4.7963 43 1 0.4182 -5.2153 2.2178 44 1 3.4480 0.0089 3.2274 45 1 2.3733 -1.1822 3.9984 46 1 0.6383 -0.4439 5.5780 47 1 0.0473 1.2075 7.3063 48 1 1.1397 3.4142 7.3254 49 1 2.8274 3.9673 5.6200 50 1 3.4231 2.3137 3.8956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162218912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:59:52 Heat of formation + Delta-G solvation = 28.357446 kcal Electronic energy + Delta-G solvation = -28827.759653 eV Core-core repulsion = 25206.988036 eV Total energy + Delta-G solvation = -3620.771616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.57787 -40.52077 -39.32116 -36.79705 -34.40863 -33.85085 -32.65576 -31.73106 -31.03482 -29.06558 -28.36815 -27.52862 -27.04389 -25.20252 -23.52575 -23.38850 -22.58623 -21.93386 -21.09651 -19.57274 -18.39312 -18.11314 -17.58062 -17.54746 -16.77915 -16.33777 -16.15677 -16.03396 -15.72477 -15.44755 -14.91980 -14.70356 -14.45169 -14.28042 -13.97480 -13.91605 -13.78027 -13.59670 -13.55013 -13.36147 -13.24752 -12.90118 -12.79372 -12.64679 -12.50872 -12.29955 -12.22335 -12.00282 -11.92206 -11.73994 -11.64503 -11.27426 -10.86259 -10.79178 -10.67733 -10.49778 -9.73047 -9.69319 -9.39935 -9.26455 -8.12777 -6.19429 0.50736 0.59994 0.81685 1.40161 1.41082 1.53488 1.70692 2.19069 2.44256 2.80174 3.21072 3.26852 3.78976 3.87636 3.94511 4.03775 4.13677 4.17371 4.25605 4.27911 4.30451 4.42285 4.45391 4.48373 4.65858 4.71880 4.73621 4.78855 4.83339 4.87539 4.93551 5.00730 5.03222 5.09349 5.19056 5.19971 5.23932 5.26915 5.29674 5.53845 5.55827 5.61354 5.62799 5.64756 5.67420 5.72063 5.80522 5.89238 5.94691 6.01583 6.08733 6.21656 6.29846 6.38835 6.95642 7.47614 8.99844 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.003733 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.359885 B = 7498.805444 C = 9214.551365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 C -0.106 4.106 4 C 0.043 3.957 5 C -0.510 4.510 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.070 3.930 14 N -0.503 5.503 15 C 0.109 3.891 16 C -0.054 4.054 17 C -0.209 4.209 18 C -0.220 4.220 19 C -0.057 4.057 20 O -0.195 6.195 21 C 0.084 3.916 22 C -0.077 4.077 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.115 4.115 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.067 0.933 34 H -0.018 1.018 35 H -0.021 1.021 36 H 0.259 0.741 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.220 0.780 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.126 0.874 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 3.010 23.952 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.044 4.044 3 C -0.164 4.164 4 C 0.006 3.994 5 C -0.548 4.548 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.057 4.057 14 N -0.224 5.224 15 C -0.019 4.019 16 C -0.105 4.105 17 C -0.229 4.229 18 C -0.239 4.239 19 C -0.125 4.125 20 O -0.091 6.091 21 C -0.043 4.043 22 C -0.077 4.077 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.134 4.134 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.000 1.000 35 H -0.003 1.003 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.237 0.763 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.144 0.856 47 H 0.158 0.842 48 H 0.159 0.841 49 H 0.154 0.846 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.257 3.487 23.397 24.036 hybrid contribution 0.317 -1.237 -1.063 1.661 sum -3.940 2.250 22.335 22.791 Atomic orbital electron populations 1.21859 0.95103 0.99811 1.00948 1.20365 0.95661 0.95831 0.92511 1.21513 0.98950 0.95324 1.00575 1.18968 0.93815 0.93828 0.92809 1.21633 1.30019 1.11787 0.91381 0.91574 1.25910 0.95739 0.95905 1.02526 1.70126 1.38985 1.25002 1.23879 0.85540 0.78146 0.78840 0.79416 1.18411 1.20797 1.20881 1.22239 0.98136 0.95629 0.89709 1.62319 1.02525 1.54283 1.03258 1.21606 0.93453 0.82165 1.04663 1.23822 1.06553 0.92507 0.87639 1.21924 1.08277 0.94441 0.98259 1.22124 1.08216 0.97003 0.96512 1.24717 1.05542 0.88360 0.93861 1.84199 1.70400 1.15884 1.38621 1.21215 0.96116 0.96918 0.90072 1.19703 0.97368 0.95128 0.95535 1.21282 0.97674 1.00298 0.95303 1.21396 1.00246 0.93815 0.98791 1.21444 0.96611 0.97289 0.99201 1.21397 0.98242 0.99791 0.95027 1.21194 1.00247 0.93269 0.98692 0.91174 0.93856 0.94612 0.95063 0.94278 0.91418 0.99974 1.00265 0.93237 0.92576 0.94699 0.86321 0.88028 0.81981 0.81291 0.76337 0.90516 0.93111 0.85621 0.84151 0.84146 0.84641 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 6.70 71.98 0.48 -4.14 16 2 C -0.04 -1.77 0.60 -52.18 -0.03 -1.80 16 3 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 4 C 0.04 2.31 4.04 29.85 0.12 2.43 16 5 C -0.51 -28.74 7.48 25.60 0.19 -28.55 16 6 H 0.07 3.59 5.76 -2.91 -0.02 3.57 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 9 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.07 2.53 4.03 86.30 0.35 2.87 16 14 N -0.50 -14.24 3.71 -905.36 -3.36 -17.60 16 15 C 0.11 2.85 5.12 85.56 0.44 3.29 16 16 C -0.05 -1.46 5.06 24.83 0.13 -1.34 16 17 C -0.21 -4.79 9.14 22.19 0.20 -4.59 16 18 C -0.22 -4.81 10.91 22.19 0.24 -4.56 16 19 C -0.06 -1.43 12.09 66.97 0.81 -0.62 16 20 O -0.19 -6.19 9.10 -2.52 -0.02 -6.21 16 21 C 0.08 2.08 4.99 85.56 0.43 2.51 16 22 C -0.08 -1.68 5.17 -19.87 -0.10 -1.78 16 23 C -0.13 -2.38 8.11 22.27 0.18 -2.20 16 24 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 25 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 27 C -0.12 -2.45 9.69 22.27 0.22 -2.23 16 28 H 0.07 2.29 6.47 -2.38 -0.02 2.27 16 29 H 0.04 1.83 6.31 -2.39 -0.02 1.81 16 30 H 0.03 1.38 7.31 -2.39 -0.02 1.36 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.61 6.62 -2.38 -0.02 1.60 16 33 H 0.07 2.28 7.68 -2.39 -0.02 2.26 16 34 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 35 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.06 2.06 7.43 -2.38 -0.02 2.04 16 38 H 0.03 1.36 5.33 -2.39 -0.01 1.35 16 39 H 0.12 2.62 5.71 -2.39 -0.01 2.61 16 40 H 0.10 2.90 4.10 -2.39 -0.01 2.89 16 41 H 0.16 2.95 5.79 -2.91 -0.02 2.93 16 42 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.22 4.04 8.06 -2.91 -0.02 4.01 16 44 H 0.08 1.96 7.49 -2.39 -0.02 1.94 16 45 H 0.05 1.26 5.76 -2.39 -0.01 1.25 16 46 H 0.13 2.09 4.96 -2.91 -0.01 2.08 16 47 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 48 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 49 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 50 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -67.95 381.54 5.23 -62.72 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.94 Total: 21.49 kcal Atomic # 6 Polarization: -54.96 SS G_CDS: 5.36 Total: -49.60 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -3.07 Total: -75.55 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.02 Total: -6.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.95 5.23 -62.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162218912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.078 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds