Wall clock time and date at job start Sat Apr 11 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 C 1.50697 * 109.46958 * 119.99678 * 2 1 3 5 5 C 1.38235 * 119.99744 * 59.73203 * 4 2 1 6 6 C 1.38237 * 119.99718 * 179.80681 * 5 4 2 7 7 C 1.38231 * 120.00033 * 0.39947 * 6 5 4 8 8 C 1.38230 * 120.00285 * 359.84983 * 7 6 5 9 9 C 1.38231 * 120.00240 * 240.00197 * 4 2 1 10 10 N 1.46500 * 109.47170 * 240.00164 * 2 1 3 11 11 N 1.40592 * 127.37897 * 305.81448 * 10 2 1 12 12 N 1.28909 * 106.81231 * 180.02562 * 11 10 2 13 13 N 1.28422 * 110.31867 * 0.02562 * 12 11 10 14 14 C 1.31476 * 110.50894 * 359.97438 * 13 12 11 15 15 N 1.38373 * 126.43868 * 180.02562 * 14 13 12 16 16 C 1.46839 * 111.00335 * 59.36989 * 15 14 13 17 17 C 1.53034 * 109.52527 * 174.16363 * 16 15 14 18 18 C 1.53116 * 109.28205 * 59.17671 * 17 16 15 19 19 C 1.53124 * 109.16056 * 302.35031 * 18 17 16 20 20 H 1.08995 * 109.50353 * 297.70823 * 19 18 17 21 21 C 1.50696 * 109.53290 * 177.60989 * 19 18 17 22 22 H 1.08004 * 120.00241 * 240.16949 * 21 19 18 23 23 C 1.37884 * 120.00174 * 60.18088 * 21 19 18 24 24 N 1.31508 * 119.99596 * 359.97438 * 23 21 19 25 25 Si 1.86800 * 119.99988 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47281 * 89.99845 * 25 23 21 27 27 H 1.48504 * 109.46918 * 209.99590 * 25 23 21 28 28 H 1.48504 * 109.47176 * 329.99599 * 25 23 21 29 29 C 1.46856 * 110.99584 * 295.15882 * 15 14 13 30 30 H 1.09005 * 109.47374 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47877 * 300.00236 * 1 2 3 32 32 H 1.09005 * 109.47235 * 60.00104 * 1 2 3 33 33 H 1.07999 * 120.00637 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.99933 * 180.23020 * 6 5 4 35 35 H 1.08004 * 119.99957 * 179.83942 * 7 6 5 36 36 H 1.07998 * 120.00243 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00005 * 359.97438 * 9 4 2 38 38 H 1.09005 * 109.46652 * 294.17668 * 16 15 14 39 39 H 1.08996 * 109.46558 * 54.14483 * 16 15 14 40 40 H 1.09004 * 109.50470 * 299.24012 * 17 16 15 41 41 H 1.08997 * 109.50941 * 179.11962 * 17 16 15 42 42 H 1.09002 * 109.53144 * 182.44122 * 18 17 16 43 43 H 1.09005 * 109.57717 * 62.28259 * 18 17 16 44 44 H 0.97007 * 119.99542 * 179.97438 * 24 23 21 45 45 H 1.08996 * 109.46496 * 305.85767 * 29 15 14 46 46 H 1.08998 * 109.46068 * 65.83928 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6937 -2.0321 1.4521 6 6 2.1577 -2.6849 2.5788 7 6 2.9535 -2.0135 3.4880 8 6 3.2878 -0.6902 3.2691 9 6 2.8269 -0.0385 2.1404 10 7 2.0183 -0.6906 -1.1962 11 7 1.6865 -1.9864 -1.6289 12 7 2.3391 -2.1934 -2.7211 13 7 3.0464 -1.1640 -3.0199 14 6 2.8860 -0.2182 -2.1207 15 7 3.4908 1.0263 -2.1201 16 6 3.1507 1.7774 -3.3352 17 6 3.7146 3.1964 -3.2341 18 6 5.2347 3.1255 -3.0642 19 6 5.5631 2.2974 -1.8188 20 1 5.1532 2.7888 -0.9365 21 6 7.0581 2.1728 -1.6764 22 1 7.5222 1.1976 -1.6862 23 6 7.8337 3.3039 -1.5335 24 7 7.2687 4.4913 -1.5219 25 14 9.6868 3.1494 -1.3563 26 1 10.3176 3.1884 -2.7000 27 1 10.2011 4.2749 -0.5352 28 1 10.0151 1.8621 -0.6925 29 6 4.9456 0.9043 -1.9611 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.0689 -2.5557 0.7436 34 1 1.8963 -3.7187 2.7500 35 1 3.3139 -2.5227 4.3696 36 1 3.9092 -0.1655 3.9797 37 1 3.0882 0.9953 1.9693 38 1 3.5797 1.2771 -4.2035 39 1 2.0669 1.8240 -3.4419 40 1 3.2756 3.7021 -2.3740 41 1 3.4754 3.7488 -4.1428 42 1 5.6357 4.1324 -2.9483 43 1 5.6787 2.6554 -3.9417 44 1 7.8143 5.2871 -1.4210 45 1 5.1656 0.3169 -1.0697 46 1 5.3663 0.4084 -2.8358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650045065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:58:43 Heat of formation + Delta-G solvation = 144.398376 kcal Electronic energy + Delta-G solvation = -28469.976634 eV Core-core repulsion = 24782.989338 eV Total energy + Delta-G solvation = -3686.987296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.78291 -39.54699 -38.56881 -36.04092 -34.17807 -32.29628 -31.87128 -31.02824 -30.34037 -30.00089 -29.40189 -25.19207 -25.10620 -24.16348 -23.01846 -22.74120 -21.81196 -21.28977 -20.63724 -18.79056 -17.65869 -17.14805 -16.51101 -16.20902 -15.83161 -15.51907 -14.84117 -14.66737 -14.23290 -14.06051 -13.78274 -13.75085 -13.53132 -13.21423 -13.09024 -12.74079 -12.68466 -12.56082 -12.39245 -12.21718 -11.95178 -11.67722 -11.40659 -11.06212 -11.02029 -10.92796 -10.82189 -10.81906 -10.30494 -10.27147 -10.11356 -9.84392 -9.63391 -9.34687 -9.02845 -8.99330 -8.90807 -8.58058 -8.36419 -6.08762 -4.15007 0.98141 1.22171 1.29937 1.97516 2.49348 3.26220 3.33370 3.36657 3.61549 3.84530 4.13578 4.38434 4.46510 4.75903 4.78738 4.90809 4.94813 5.02758 5.21324 5.23672 5.28221 5.37052 5.39640 5.46672 5.56964 5.59999 5.62985 5.80220 5.81643 5.86334 5.93841 5.95236 6.13698 6.24780 6.25959 6.32608 6.39387 6.43972 6.47645 6.53901 6.68776 6.84658 6.86643 7.14032 7.22162 7.42840 7.64412 7.87954 8.00718 8.31413 8.70866 8.87569 9.50238 10.97383 Molecular weight = 327.18amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004223 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.468792 B = 6628.336081 C = 7973.115810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.197 3.803 3 H 0.130 0.870 4 C -0.112 4.112 5 C -0.092 4.092 6 C -0.126 4.126 7 C -0.111 4.111 8 C -0.121 4.121 9 C -0.092 4.092 10 N -0.360 5.360 11 N -0.093 5.093 12 N -0.044 5.044 13 N -0.355 5.355 14 C 0.430 3.570 15 N -0.471 5.471 16 C 0.071 3.929 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.060 3.940 20 H 0.037 0.963 21 C -0.517 4.517 22 H 0.055 0.945 23 C 0.067 3.933 24 N -0.887 5.887 25 Si 0.891 3.109 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.076 3.924 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.037 0.963 44 H 0.261 0.739 45 H 0.062 0.938 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.451 -6.254 6.952 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.095 3.905 3 H 0.147 0.853 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.144 4.144 7 C -0.129 4.129 8 C -0.139 4.139 9 C -0.110 4.110 10 N -0.158 5.158 11 N -0.079 5.079 12 N -0.040 5.040 13 N -0.212 5.212 14 C 0.064 3.936 15 N -0.200 5.200 16 C -0.055 4.055 17 C -0.154 4.154 18 C -0.153 4.153 19 C 0.041 3.959 20 H 0.055 0.945 21 C -0.555 4.555 22 H 0.073 0.927 23 C -0.135 4.135 24 N -0.525 5.525 25 Si 0.719 3.281 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.199 1.199 29 C -0.049 4.049 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.840 -7.061 6.820 16.968 hybrid contribution 1.401 0.309 0.061 1.436 sum -12.439 -6.752 6.881 15.738 Atomic orbital electron populations 1.22134 0.91690 1.04005 1.03490 1.20486 0.95851 0.95939 0.78205 0.85270 1.19770 1.00499 0.95258 0.95800 1.21143 0.98875 0.93869 0.97130 1.21140 0.98633 0.99945 0.94700 1.21241 0.97663 0.94819 0.99186 1.21171 1.00044 0.94964 0.97758 1.21165 0.95494 1.00543 0.93816 1.51795 1.31848 1.12248 1.19895 1.82378 1.21469 0.94194 1.09884 1.77891 1.02910 1.17343 1.05854 1.74973 1.22257 0.98604 1.25339 1.23464 0.90433 0.93373 0.86314 1.59338 1.13940 1.06506 1.40172 1.22183 0.99420 0.95423 0.88506 1.21717 0.99661 0.92931 1.01043 1.21727 0.90509 1.04591 0.98466 1.18695 0.94501 0.87638 0.95053 0.94476 1.21046 0.91127 0.92895 1.50461 0.92658 1.24886 0.98486 0.95272 0.94857 1.69870 1.35257 0.97497 1.49919 0.86602 0.85593 0.77723 0.78161 1.20612 1.21187 1.19934 1.22581 0.79251 1.02673 1.00382 0.90864 0.89735 0.91420 0.85303 0.85957 0.86011 0.85561 0.85097 0.93020 0.91994 0.91730 0.92309 0.88539 0.94427 0.92905 0.91942 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.22 37.16 0.34 -1.13 16 2 C 0.20 2.40 3.38 -69.08 -0.23 2.17 16 3 H 0.13 1.56 7.59 -51.93 -0.39 1.16 16 4 C -0.11 -1.37 4.98 -104.63 -0.52 -1.89 16 5 C -0.09 -1.09 8.71 -39.58 -0.34 -1.44 16 6 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 7 C -0.11 -1.14 10.05 -39.59 -0.40 -1.54 16 8 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 9 C -0.09 -1.09 9.67 -39.58 -0.38 -1.47 16 10 N -0.36 -5.51 3.30 -56.49 -0.19 -5.70 16 11 N -0.09 -1.52 12.52 60.35 0.76 -0.77 16 12 N -0.04 -0.81 13.38 60.35 0.81 0.00 16 13 N -0.36 -6.78 12.14 30.09 0.37 -6.42 16 14 C 0.43 7.53 6.49 -320.43 -2.08 5.45 16 15 N -0.47 -8.28 4.43 -174.90 -0.77 -9.05 16 16 C 0.07 1.18 5.35 -3.84 -0.02 1.16 16 17 C -0.12 -1.98 6.09 -26.65 -0.16 -2.14 16 18 C -0.11 -2.47 5.03 -26.61 -0.13 -2.60 16 19 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 20 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.52 -13.38 8.56 -34.44 -0.29 -13.67 16 22 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 23 C 0.07 1.75 5.31 -17.82 -0.09 1.65 16 24 N -0.89 -23.75 11.36 55.43 0.63 -23.12 16 25 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.08 1.56 4.62 -3.83 -0.02 1.54 16 30 H 0.07 0.71 7.37 -51.93 -0.38 0.33 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.13 1.53 6.73 -52.49 -0.35 1.18 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.47 7.95 -52.49 -0.42 1.05 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 2.33 6.16 -51.93 -0.32 2.01 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -28.26 375.16 -10.01 -38.28 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.90 Total: 1.88 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -5.34 Total: -16.23 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 1.60 Total: -45.06 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.26 -10.01 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650045065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.676 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds