Wall clock time and date at job start Sat Apr 11 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 C 1.50697 * 109.46958 * 119.99678 * 2 1 3 5 5 C 1.38235 * 119.99744 * 59.73203 * 4 2 1 6 6 C 1.38237 * 119.99718 * 179.80681 * 5 4 2 7 7 C 1.38231 * 120.00033 * 0.39947 * 6 5 4 8 8 C 1.38230 * 120.00285 * 359.84983 * 7 6 5 9 9 C 1.38231 * 120.00240 * 240.00197 * 4 2 1 10 10 N 1.46500 * 109.47170 * 240.00164 * 2 1 3 11 11 N 1.40592 * 127.37897 * 305.81448 * 10 2 1 12 12 N 1.28909 * 106.81231 * 180.02562 * 11 10 2 13 13 N 1.28422 * 110.31867 * 0.02562 * 12 11 10 14 14 C 1.31476 * 110.50894 * 359.97438 * 13 12 11 15 15 N 1.38373 * 126.43868 * 180.02562 * 14 13 12 16 16 C 1.46839 * 111.00335 * 59.36989 * 15 14 13 17 17 C 1.53034 * 109.52527 * 174.16363 * 16 15 14 18 18 C 1.53116 * 109.28205 * 59.17671 * 17 16 15 19 19 C 1.53124 * 109.16056 * 302.35031 * 18 17 16 20 20 H 1.08995 * 109.50353 * 297.70823 * 19 18 17 21 21 C 1.50696 * 109.53290 * 177.60989 * 19 18 17 22 22 H 1.08004 * 120.00241 * 240.16949 * 21 19 18 23 23 C 1.37884 * 120.00174 * 60.18088 * 21 19 18 24 24 N 1.31508 * 119.99596 * 359.97438 * 23 21 19 25 25 Si 1.86800 * 119.99988 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47281 * 89.99845 * 25 23 21 27 27 H 1.48504 * 109.46918 * 209.99590 * 25 23 21 28 28 H 1.48504 * 109.47176 * 329.99599 * 25 23 21 29 29 C 1.46856 * 110.99584 * 295.15882 * 15 14 13 30 30 H 1.09005 * 109.47374 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47877 * 300.00236 * 1 2 3 32 32 H 1.09005 * 109.47235 * 60.00104 * 1 2 3 33 33 H 1.07999 * 120.00637 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.99933 * 180.23020 * 6 5 4 35 35 H 1.08004 * 119.99957 * 179.83942 * 7 6 5 36 36 H 1.07998 * 120.00243 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00005 * 359.97438 * 9 4 2 38 38 H 1.09005 * 109.46652 * 294.17668 * 16 15 14 39 39 H 1.08996 * 109.46558 * 54.14483 * 16 15 14 40 40 H 1.09004 * 109.50470 * 299.24012 * 17 16 15 41 41 H 1.08997 * 109.50941 * 179.11962 * 17 16 15 42 42 H 1.09002 * 109.53144 * 182.44122 * 18 17 16 43 43 H 1.09005 * 109.57717 * 62.28259 * 18 17 16 44 44 H 0.97007 * 119.99542 * 179.97438 * 24 23 21 45 45 H 1.08996 * 109.46496 * 305.85767 * 29 15 14 46 46 H 1.08998 * 109.46068 * 65.83928 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6937 -2.0321 1.4521 6 6 2.1577 -2.6849 2.5788 7 6 2.9535 -2.0135 3.4880 8 6 3.2878 -0.6902 3.2691 9 6 2.8269 -0.0385 2.1404 10 7 2.0183 -0.6906 -1.1962 11 7 1.6865 -1.9864 -1.6289 12 7 2.3391 -2.1934 -2.7211 13 7 3.0464 -1.1640 -3.0199 14 6 2.8860 -0.2182 -2.1207 15 7 3.4908 1.0263 -2.1201 16 6 3.1507 1.7774 -3.3352 17 6 3.7146 3.1964 -3.2341 18 6 5.2347 3.1255 -3.0642 19 6 5.5631 2.2974 -1.8188 20 1 5.1532 2.7888 -0.9365 21 6 7.0581 2.1728 -1.6764 22 1 7.5222 1.1976 -1.6862 23 6 7.8337 3.3039 -1.5335 24 7 7.2687 4.4913 -1.5219 25 14 9.6868 3.1494 -1.3563 26 1 10.3176 3.1884 -2.7000 27 1 10.2011 4.2749 -0.5352 28 1 10.0151 1.8621 -0.6925 29 6 4.9456 0.9043 -1.9611 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.0689 -2.5557 0.7436 34 1 1.8963 -3.7187 2.7500 35 1 3.3139 -2.5227 4.3696 36 1 3.9092 -0.1655 3.9797 37 1 3.0882 0.9953 1.9693 38 1 3.5797 1.2771 -4.2035 39 1 2.0669 1.8240 -3.4419 40 1 3.2756 3.7021 -2.3740 41 1 3.4754 3.7488 -4.1428 42 1 5.6357 4.1324 -2.9483 43 1 5.6787 2.6554 -3.9417 44 1 7.8143 5.2871 -1.4210 45 1 5.1656 0.3169 -1.0697 46 1 5.3663 0.4084 -2.8358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650045065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:58:42 Heat of formation + Delta-G solvation = 131.590467 kcal Electronic energy + Delta-G solvation = -28470.532026 eV Core-core repulsion = 24782.989338 eV Total energy + Delta-G solvation = -3687.542689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.13748 -40.43042 -40.10783 -37.10545 -35.89365 -33.96036 -33.02422 -31.90420 -31.88419 -31.58978 -30.27346 -27.02374 -26.27571 -25.65073 -24.10038 -23.68751 -23.37952 -22.67767 -21.70479 -20.43840 -18.99993 -18.42825 -17.86677 -17.50249 -17.31196 -16.53244 -16.44761 -15.77310 -15.69975 -15.40066 -15.17227 -14.78315 -14.55980 -14.45273 -14.39475 -14.26539 -14.14000 -13.70279 -13.52826 -13.38425 -13.18354 -12.86262 -12.74827 -12.63655 -12.59943 -12.35600 -12.18071 -11.94173 -11.91065 -11.86599 -11.49346 -11.42219 -11.22801 -11.06152 -10.74633 -10.39995 -10.04962 -9.89348 -9.84110 -8.09219 -6.21558 -0.19609 0.12691 0.43121 0.80267 1.08176 1.42177 1.44836 1.53037 2.34820 2.49973 2.82841 3.08357 3.19502 3.42738 3.58507 3.88506 3.90439 4.01240 4.10437 4.11436 4.19607 4.24967 4.31269 4.32345 4.47087 4.49624 4.52984 4.54695 4.60160 4.73728 4.78758 4.80896 4.94305 4.97447 4.99698 5.07933 5.09801 5.13905 5.24634 5.45928 5.48759 5.54381 5.55423 5.63467 5.64355 5.90743 6.00548 6.01115 6.13296 6.37575 6.86591 7.33559 7.46027 8.95373 Molecular weight = 327.18amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004223 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.468792 B = 6628.336081 C = 7973.115810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.190 3.810 3 H 0.131 0.869 4 C -0.123 4.123 5 C -0.104 4.104 6 C -0.131 4.131 7 C -0.112 4.112 8 C -0.130 4.130 9 C -0.107 4.107 10 N -0.345 5.345 11 N -0.081 5.081 12 N -0.063 5.063 13 N -0.376 5.376 14 C 0.420 3.580 15 N -0.462 5.462 16 C 0.073 3.927 17 C -0.104 4.104 18 C -0.109 4.109 19 C 0.063 3.937 20 H 0.016 0.984 21 C -0.538 4.538 22 H 0.045 0.955 23 C 0.027 3.973 24 N -0.907 5.907 25 Si 0.946 3.054 26 H -0.278 1.278 27 H -0.281 1.281 28 H -0.274 1.274 29 C 0.095 3.905 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.025 0.975 44 H 0.262 0.738 45 H 0.052 0.948 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.458 -6.566 7.805 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.089 3.911 3 H 0.148 0.852 4 C -0.124 4.124 5 C -0.123 4.123 6 C -0.149 4.149 7 C -0.130 4.130 8 C -0.147 4.147 9 C -0.126 4.126 10 N -0.143 5.143 11 N -0.067 5.067 12 N -0.058 5.058 13 N -0.233 5.233 14 C 0.054 3.946 15 N -0.190 5.190 16 C -0.053 4.053 17 C -0.141 4.141 18 C -0.147 4.147 19 C 0.044 3.956 20 H 0.034 0.966 21 C -0.576 4.576 22 H 0.063 0.937 23 C -0.173 4.173 24 N -0.545 5.545 25 Si 0.772 3.228 26 H -0.203 1.203 27 H -0.206 1.206 28 H -0.199 1.199 29 C -0.031 4.031 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.868 -7.373 7.681 18.287 hybrid contribution 1.692 0.378 -0.106 1.737 sum -13.177 -6.995 7.575 16.731 Atomic orbital electron populations 1.22136 0.89370 1.04311 1.04774 1.20858 0.97653 0.95549 0.77056 0.85177 1.19799 1.01140 0.95615 0.95864 1.21238 0.99363 0.93874 0.97791 1.21449 0.98217 1.00973 0.94217 1.21576 0.96955 0.94597 0.99828 1.21455 1.00028 0.95541 0.97714 1.21309 0.95924 1.00845 0.94505 1.52040 1.30734 1.11608 1.19925 1.82314 1.20750 0.94504 1.09158 1.77881 1.03700 1.17530 1.06727 1.74893 1.22833 0.99128 1.26423 1.23324 0.91279 0.93109 0.86937 1.59256 1.12024 1.06783 1.40889 1.22234 1.01036 0.94429 0.87610 1.21598 0.96107 0.93888 1.02555 1.21538 0.93766 1.02316 0.97069 1.18560 0.93170 0.89027 0.94825 0.96615 1.21356 0.92992 0.92570 1.50701 0.93664 1.25511 1.02072 0.95070 0.94685 1.69973 1.36421 0.97863 1.50281 0.85747 0.81286 0.77647 0.78106 1.20337 1.20627 1.19888 1.22155 0.81128 1.00656 0.99166 0.91012 0.87426 0.91099 0.85547 0.83921 0.83486 0.84066 0.85127 0.93773 0.89123 0.91312 0.89675 0.91239 0.95588 0.92846 0.92989 0.95078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.22 71.98 0.66 -1.85 16 2 C 0.19 4.38 3.38 44.24 0.15 4.53 16 3 H 0.13 3.00 7.59 -2.39 -0.02 2.98 16 4 C -0.12 -2.89 4.98 -19.87 -0.10 -2.99 16 5 C -0.10 -2.35 8.71 22.27 0.19 -2.16 16 6 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 7 C -0.11 -2.06 10.05 22.27 0.22 -1.84 16 8 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 9 C -0.11 -2.48 9.67 22.27 0.22 -2.26 16 10 N -0.34 -10.23 3.30 -332.63 -1.10 -11.33 16 11 N -0.08 -2.57 12.52 37.02 0.46 -2.11 16 12 N -0.06 -2.28 13.38 37.02 0.50 -1.78 16 13 N -0.38 -14.22 12.14 -58.70 -0.71 -14.93 16 14 C 0.42 14.42 6.49 260.66 1.69 16.12 16 15 N -0.46 -15.97 4.43 -707.27 -3.13 -19.11 16 16 C 0.07 2.30 5.35 86.33 0.46 2.77 16 17 C -0.10 -3.42 6.09 30.64 0.19 -3.23 16 18 C -0.11 -4.72 5.03 30.67 0.15 -4.57 16 19 C 0.06 2.96 2.26 -11.49 -0.03 2.94 16 20 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 21 C -0.54 -28.44 8.56 25.60 0.22 -28.23 16 22 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 23 C 0.03 1.40 5.31 84.66 0.45 1.85 16 24 N -0.91 -49.11 11.36 21.45 0.24 -48.87 16 25 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 29 C 0.10 3.96 4.62 86.32 0.40 4.36 16 30 H 0.07 1.26 7.37 -2.38 -0.02 1.24 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.13 2.86 6.73 -2.91 -0.02 2.84 16 34 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.13 2.91 7.95 -2.91 -0.02 2.89 16 38 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.09 2.39 8.10 -2.39 -0.02 2.38 16 40 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.07 3.41 6.16 -2.39 -0.01 3.40 16 43 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.26 13.58 8.31 -92.70 -0.77 12.80 16 45 H 0.05 2.23 8.10 -2.39 -0.02 2.21 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -60.96 375.16 4.59 -56.37 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.97 Total: 16.79 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 5.33 Total: -19.32 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.74 Total: -98.12 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -60.96 4.59 -56.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650045065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.964 kcal (2) G-P(sol) polarization free energy of solvation -60.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds