Wall clock time and date at job start Sat Apr 11 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47202 * 2 1 4 4 C 1.50700 * 109.47128 * 120.00162 * 2 1 3 5 5 N 1.30915 * 126.48920 * 299.97671 * 4 2 1 6 6 N 1.28978 * 109.76445 * 179.97438 * 5 4 2 7 7 C 1.29636 * 109.46879 * 359.93904 * 6 5 4 8 8 N 1.34418 * 126.48302 * 119.97450 * 4 2 1 9 9 C 1.46307 * 129.75971 * 0.28854 * 8 4 2 10 10 C 1.53458 * 108.18458 * 163.60267 * 9 8 4 11 11 N 1.46969 * 109.74585 * 49.58570 * 10 9 8 12 12 C 1.38826 * 111.00023 * 165.14129 * 11 10 9 13 13 C 1.39793 * 119.57811 * 304.26885 * 12 11 10 14 14 C 1.38602 * 119.48920 * 179.97438 * 13 12 11 15 15 C 1.38389 * 118.67839 * 0.02562 * 14 13 12 16 16 C 1.40550 * 119.14852 * 0.02562 * 15 14 13 17 17 C 1.41318 * 119.78148 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00347 * 359.97438 * 17 16 15 19 19 C 1.40028 * 119.99754 * 179.71800 * 17 16 15 20 20 N 1.30744 * 120.00260 * 0.27874 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 180.27307 * 19 17 16 22 22 H 1.48496 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47055 * 120.00250 * 21 19 17 24 24 H 1.48498 * 109.47283 * 240.00326 * 21 19 17 25 25 N 1.31954 * 119.58616 * 124.53272 * 12 11 10 26 26 C 1.47394 * 111.24686 * 289.26958 * 11 10 9 27 27 H 1.09001 * 109.75083 * 290.44574 * 26 11 10 28 28 C 1.52997 * 109.75369 * 169.75636 * 26 11 10 29 29 H 1.09001 * 109.47013 * 300.00017 * 1 2 3 30 30 H 1.08995 * 109.47025 * 59.99710 * 1 2 3 31 31 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47013 * 239.99983 * 2 1 3 33 33 H 1.09007 * 109.47243 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47367 * 300.00080 * 3 2 1 35 35 H 1.08997 * 109.46938 * 60.00540 * 3 2 1 36 36 H 1.09001 * 109.72912 * 283.25461 * 9 8 4 37 37 H 1.09001 * 109.71965 * 43.86940 * 9 8 4 38 38 H 1.08994 * 109.41810 * 289.50270 * 10 9 8 39 39 H 1.08996 * 109.43052 * 169.67184 * 10 9 8 40 40 H 1.08004 * 120.26266 * 359.97438 * 13 12 11 41 41 H 1.08000 * 120.66387 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.42421 * 179.97438 * 15 14 13 43 43 H 0.97005 * 120.00071 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.47271 * 59.99777 * 28 26 11 45 45 H 1.08995 * 109.47476 * 179.97438 * 28 26 11 46 46 H 1.09004 * 109.46781 * 300.00334 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7960 -0.3755 2.4738 6 7 2.3822 -1.2057 3.2680 7 6 3.0115 -2.0995 2.5711 8 7 2.8078 -1.8080 1.2590 9 6 3.3659 -2.5884 0.1544 10 6 4.4905 -3.4712 0.7120 11 7 4.0139 -4.1898 1.9022 12 6 4.8720 -5.2300 2.2321 13 6 5.1707 -6.2071 1.2781 14 6 6.0281 -7.2445 1.6093 15 6 6.5651 -7.2809 2.8842 16 6 6.2254 -6.2696 3.7993 17 6 6.7657 -6.2940 5.1049 18 1 7.4369 -7.0882 5.3969 19 6 6.4350 -5.2855 6.0183 20 7 5.6221 -4.3243 5.6651 21 14 7.1551 -5.3136 7.7417 22 1 8.0398 -6.4971 7.8894 23 1 7.9432 -4.0755 7.9691 24 1 6.0553 -5.3900 8.7366 25 7 5.3912 -5.2868 3.4439 26 6 3.8321 -3.2734 3.0422 27 1 4.8034 -2.9253 3.3936 28 6 3.1010 -3.9962 4.1753 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 2.5888 -3.2156 -0.2824 37 1 3.7665 -1.9168 -0.6049 38 1 5.3415 -2.8462 0.9824 39 1 4.7969 -4.1907 -0.0473 40 1 4.7369 -6.1541 0.2904 41 1 6.2716 -8.0097 0.8871 42 1 7.2359 -8.0767 3.1726 43 1 5.3927 -3.6259 6.2980 44 1 3.6876 -4.8577 4.4948 45 1 2.9694 -3.3149 5.0157 46 1 2.1256 -4.3315 3.8226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771975118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:59:04 Heat of formation + Delta-G solvation = 130.693665 kcal Electronic energy + Delta-G solvation = -28759.606717 eV Core-core repulsion = 25072.025140 eV Total energy + Delta-G solvation = -3687.581577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.03461 -39.34440 -37.02516 -35.88465 -34.37568 -33.67173 -31.69845 -30.68816 -29.88446 -28.60370 -27.61919 -27.33112 -25.53956 -23.84639 -23.46525 -22.86748 -21.38447 -20.76299 -19.65845 -19.10373 -17.74887 -16.91656 -16.37163 -15.97474 -15.38611 -14.89712 -14.88338 -14.55744 -14.53255 -14.19261 -13.76250 -13.61397 -13.24865 -13.15386 -12.63975 -12.37147 -12.29332 -12.27431 -12.01085 -11.53482 -11.43680 -11.32305 -11.26523 -11.19844 -11.14186 -11.05486 -10.82793 -10.79815 -10.61153 -10.43094 -10.10213 -9.99097 -9.85893 -9.60264 -9.03019 -8.58851 -8.18970 -7.68146 -7.15471 -6.54204 -4.63616 2.11163 2.52648 2.70962 2.87085 3.07217 3.10231 3.12936 3.19866 3.88620 3.95817 4.22876 4.45757 4.61479 4.62559 4.71006 4.91760 4.96791 5.05405 5.11277 5.42966 5.46606 5.51632 5.64381 5.66259 5.68015 5.75726 5.77850 5.95097 6.01399 6.06908 6.14180 6.17491 6.25049 6.33813 6.41625 6.48541 6.65336 6.72689 6.85242 6.94723 7.04720 7.11291 7.20524 7.42996 7.62699 7.62947 7.74753 8.02189 8.19250 8.58602 8.83458 9.08963 9.88991 10.18188 Molecular weight = 327.18amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.003952 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.380906 B = 7082.425825 C = 8403.882058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.001 4.001 3 C -0.140 4.140 4 C 0.169 3.831 5 N -0.299 5.299 6 N -0.289 5.289 7 C 0.196 3.804 8 N -0.471 5.471 9 C 0.111 3.889 10 C 0.046 3.954 11 N -0.481 5.481 12 C 0.322 3.678 13 C -0.322 4.322 14 C -0.043 4.043 15 C -0.290 4.290 16 C 0.273 3.727 17 C -0.425 4.425 18 H 0.085 0.915 19 C 0.071 3.929 20 N -0.711 5.711 21 Si 0.906 3.094 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.272 1.272 25 N -0.506 5.506 26 C 0.193 3.807 27 H 0.098 0.902 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.276 0.724 44 H 0.121 0.879 45 H 0.055 0.945 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 6.006 -11.309 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 C -0.198 4.198 4 C -0.098 4.098 5 N -0.139 5.139 6 N -0.128 5.128 7 C -0.072 4.072 8 N -0.162 5.162 9 C -0.013 4.013 10 C -0.082 4.082 11 N -0.202 5.202 12 C 0.085 3.915 13 C -0.347 4.347 14 C -0.067 4.067 15 C -0.313 4.313 16 C 0.148 3.852 17 C -0.456 4.456 18 H 0.103 0.897 19 C -0.154 4.154 20 N -0.333 5.333 21 Si 0.731 3.269 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.197 1.197 25 N -0.224 5.224 26 C 0.084 3.916 27 H 0.116 0.884 28 C -0.177 4.177 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.139 0.861 45 H 0.074 0.926 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.529 7.424 -9.536 13.290 hybrid contribution 1.625 -1.098 -0.964 2.185 sum -3.904 6.327 -10.500 12.866 Atomic orbital electron populations 1.21784 0.92868 1.02348 1.02800 1.19486 0.96744 0.95597 0.90393 1.21792 1.01065 0.94138 1.02844 1.24414 0.97802 0.89682 0.97915 1.74438 1.20454 1.21633 0.97411 1.73969 1.10754 1.02724 1.25331 1.25363 1.01718 1.00144 0.80018 1.46046 1.38847 1.22517 1.08800 1.22146 0.97556 0.93731 0.87821 1.22490 0.94511 0.96939 0.94265 1.59347 1.45128 1.10496 1.05189 1.19551 0.89502 0.90601 0.91852 1.20595 1.12505 1.01716 0.99908 1.20695 0.94797 0.95707 0.95497 1.21666 1.10018 1.04031 0.95562 1.18315 0.87781 0.86384 0.92741 1.19655 1.23506 1.07973 0.94459 0.89712 1.26037 0.94175 0.94776 1.00457 1.70059 1.21589 1.07028 1.34576 0.86283 0.79695 0.79262 0.81702 1.18556 1.19868 1.19693 1.68605 1.13426 1.26245 1.14133 1.20037 0.97038 0.84534 0.89993 0.88423 1.21797 0.98040 1.03215 0.94684 0.91228 0.91714 0.92644 0.90078 0.92735 0.91697 0.91205 0.88738 0.88683 0.93092 0.87306 0.88666 0.88452 0.88325 0.91269 0.86054 0.92554 0.95452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 2 C 0.00 -0.01 3.32 -91.77 -0.30 -0.32 16 3 C -0.14 -1.34 9.17 37.15 0.34 -1.00 16 4 C 0.17 2.63 6.59 -155.63 -1.03 1.60 16 5 N -0.30 -5.69 12.24 32.66 0.40 -5.29 16 6 N -0.29 -6.10 12.15 32.76 0.40 -5.71 16 7 C 0.20 3.84 7.17 -155.27 -1.11 2.73 16 8 N -0.47 -7.59 3.12 -110.80 -0.35 -7.93 16 9 C 0.11 1.37 6.79 -3.91 -0.03 1.34 16 10 C 0.05 0.69 5.40 -3.55 -0.02 0.67 16 11 N -0.48 -9.30 4.45 -166.17 -0.74 -10.04 16 12 C 0.32 7.10 6.06 -155.32 -0.94 6.16 16 13 C -0.32 -6.62 9.08 -38.87 -0.35 -6.98 16 14 C -0.04 -0.88 10.15 -39.39 -0.40 -1.28 16 15 C -0.29 -6.63 9.83 -38.65 -0.38 -7.01 16 16 C 0.27 6.87 6.55 -85.00 -0.56 6.31 16 17 C -0.42 -10.50 9.14 -37.74 -0.34 -10.85 16 18 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 19 C 0.07 1.67 5.50 -17.34 -0.10 1.58 16 20 N -0.71 -17.06 9.39 55.55 0.52 -16.54 16 21 Si 0.91 17.74 29.56 -169.99 -5.02 12.72 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 N -0.51 -12.40 4.30 -10.33 -0.04 -12.44 16 26 C 0.19 4.00 2.27 -68.56 -0.16 3.84 16 27 H 0.10 2.27 7.74 -51.93 -0.40 1.87 16 28 C -0.12 -2.60 8.15 37.16 0.30 -2.30 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.69 7.58 -51.93 -0.39 0.30 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 38 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.11 1.46 6.40 -51.93 -0.33 1.12 16 40 H 0.10 1.72 7.17 -52.48 -0.38 1.34 16 41 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.28 6.19 8.29 -40.82 -0.34 5.86 16 44 H 0.12 2.96 4.62 -51.93 -0.24 2.72 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -28.78 366.04 -10.83 -39.61 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.78 Total: 6.62 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -4.73 Total: -6.51 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.19 Total: -57.96 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.02 Total: 12.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.78 -10.83 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771975118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.306 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds