Wall clock time and date at job start Sat Apr 11 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 120.00146 * 2 1 4 4 N 1.46495 * 109.46982 * 125.00002 * 3 2 1 5 5 C 1.46505 * 120.00354 * 278.14990 * 4 3 2 6 6 C 1.50693 * 109.47372 * 270.00607 * 5 4 3 7 7 H 1.08006 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00247 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99907 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47193 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46996 * 119.99979 * 10 8 6 13 13 H 1.48500 * 109.46963 * 239.99589 * 10 8 6 14 14 C 1.34778 * 119.99995 * 98.15620 * 4 3 2 15 15 O 1.21554 * 120.00240 * 186.15207 * 14 4 3 16 16 C 1.47853 * 119.99701 * 6.15021 * 14 4 3 17 17 C 1.39571 * 120.14361 * 330.38525 * 16 14 4 18 18 C 1.37965 * 119.85006 * 180.20912 * 17 16 14 19 19 C 1.38352 * 120.14241 * 359.51379 * 18 17 16 20 20 C 1.50704 * 119.84991 * 180.25356 * 19 18 17 21 21 C 1.53006 * 109.47208 * 239.99825 * 20 19 18 22 22 C 1.52999 * 109.46874 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47028 * 60.00721 * 22 21 20 24 24 C 1.52999 * 109.47256 * 299.99614 * 23 22 21 25 25 C 1.53003 * 109.47215 * 59.99944 * 24 23 22 26 26 C 1.38362 * 120.29700 * 0.28143 * 19 18 17 27 27 C 1.37953 * 120.13988 * 359.95287 * 26 19 18 28 28 H 1.07996 * 119.99842 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99616 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99916 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47018 * 4.99926 * 3 2 1 32 32 H 1.08994 * 109.46821 * 245.00472 * 3 2 1 33 33 H 1.08999 * 109.46573 * 30.00276 * 5 4 3 34 34 H 1.08999 * 109.46775 * 150.00236 * 5 4 3 35 35 H 0.96997 * 120.00187 * 180.02562 * 9 8 6 36 36 H 1.08003 * 120.07679 * 359.97438 * 17 16 14 37 37 H 1.07996 * 119.92319 * 179.79495 * 18 17 16 38 38 H 1.08996 * 109.47192 * 0.02562 * 20 19 18 39 39 H 1.08995 * 109.47296 * 300.00861 * 21 20 19 40 40 H 1.08996 * 109.46538 * 60.00769 * 21 20 19 41 41 H 1.08996 * 109.47299 * 300.00630 * 22 21 20 42 42 H 1.09004 * 109.46630 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46887 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47155 * 59.99821 * 23 22 21 45 45 H 1.09009 * 109.46962 * 300.00338 * 24 23 22 46 46 H 1.08994 * 109.47797 * 180.02562 * 24 23 22 47 47 H 1.08994 * 109.47559 * 180.02562 * 25 24 23 48 48 H 1.08996 * 109.46845 * 60.00008 * 25 24 23 49 49 H 1.07991 * 119.92739 * 179.97438 * 26 19 18 50 50 H 1.08002 * 120.07093 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5131 1.6956 2.4667 6 6 2.6354 3.1856 2.6560 7 1 3.0320 3.8002 1.8614 8 6 2.2420 3.7641 3.8440 9 7 1.7595 3.0157 4.8119 10 14 2.3942 5.6110 4.0790 11 1 2.9623 6.2212 2.8502 12 1 1.0520 6.1886 4.3441 13 1 3.2898 5.8914 5.2299 14 6 4.2920 1.0219 0.9439 15 8 5.0400 0.9348 1.8981 16 6 4.8063 0.7879 -0.4224 17 6 3.9626 0.2801 -1.4114 18 6 4.4499 0.0600 -2.6832 19 6 5.7691 0.3510 -2.9817 20 6 6.2930 0.1134 -4.3746 21 6 7.4485 -0.8881 -4.3210 22 6 7.9808 -1.1288 -5.7351 23 6 8.4783 0.1926 -6.3245 24 6 7.3230 1.1942 -6.3782 25 6 6.7906 1.4349 -4.9641 26 6 6.6097 0.8587 -2.0070 27 6 6.1362 1.0789 -0.7301 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3587 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4688 1.4008 2.5695 34 1 3.1112 1.1832 3.2202 35 1 1.4823 3.4227 5.6476 36 1 2.9315 0.0563 -1.1807 37 1 3.7990 -0.3361 -3.4485 38 1 5.4945 -0.2856 -5.0000 39 1 8.2469 -0.4887 -3.6957 40 1 7.0941 -1.8293 -3.9007 41 1 7.1825 -1.5280 -6.3608 42 1 8.8036 -1.8427 -5.6969 43 1 8.8579 0.0210 -7.3318 44 1 9.2765 0.5918 -5.6989 45 1 6.5246 0.7949 -7.0039 46 1 7.6772 2.1354 -6.7984 47 1 5.9672 2.1481 -5.0023 48 1 7.5888 1.8341 -4.3384 49 1 7.6385 1.0834 -2.2464 50 1 6.7932 1.4756 0.0298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359444334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:58:55 Heat of formation + Delta-G solvation = 10.328720 kcal Electronic energy + Delta-G solvation = -27683.054455 eV Core-core repulsion = 24061.501054 eV Total energy + Delta-G solvation = -3621.553401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.34762 -39.11392 -37.36243 -35.93733 -33.34293 -32.73537 -32.04239 -31.00878 -30.92019 -29.28077 -27.32189 -25.82346 -24.10829 -22.99501 -22.81541 -22.30108 -21.07248 -20.14166 -19.75292 -18.87440 -16.86600 -16.53741 -16.35803 -15.71216 -15.41937 -14.86055 -14.74228 -14.51068 -14.43533 -14.33897 -13.92085 -13.79846 -13.57104 -13.26543 -12.94790 -12.84875 -12.56209 -12.45707 -12.30223 -11.94169 -11.69529 -11.64550 -11.40807 -11.29227 -11.23992 -11.09659 -10.90926 -10.75251 -10.60994 -10.57406 -10.39304 -10.24120 -10.18528 -9.64417 -9.27963 -9.01047 -8.76211 -8.48877 -8.42238 -7.68560 -6.04084 -4.08983 1.13403 1.47918 2.39667 3.29755 3.34126 3.37793 3.42256 3.88496 4.17187 4.33373 4.44117 4.45104 4.54831 4.80852 4.90725 5.00451 5.01421 5.08983 5.10223 5.22176 5.24622 5.25284 5.27326 5.30369 5.37185 5.39379 5.47019 5.51774 5.62305 5.65761 5.75362 5.84702 5.86505 5.87649 5.94083 5.98988 6.04069 6.07876 6.11443 6.17713 6.21067 6.43011 6.57192 6.63084 6.76554 6.88489 7.01091 7.12604 7.46123 7.54353 7.92672 8.23470 8.38803 8.89157 9.06348 9.56060 11.04040 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002746 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.666821 B =10193.461594 C =10897.977216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.177 4.177 3 C 0.106 3.894 4 N -0.584 5.584 5 C 0.246 3.754 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.546 3.454 15 O -0.538 6.538 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.128 4.128 19 C -0.066 4.066 20 C -0.046 4.046 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.065 4.065 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.158 0.842 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.122 0.878 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 -7.714 -23.742 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C -0.017 4.017 4 N -0.314 5.314 5 C 0.127 3.873 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.333 3.667 15 O -0.416 6.416 16 C -0.124 4.124 17 C -0.136 4.136 18 C -0.146 4.146 19 C -0.066 4.066 20 C -0.065 4.065 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.142 4.142 27 C -0.083 4.083 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.175 0.825 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.140 0.860 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.096 -7.724 -23.001 25.280 hybrid contribution -0.086 1.028 0.336 1.085 sum 7.009 -6.697 -22.665 24.651 Atomic orbital electron populations 1.23853 0.95737 1.01918 0.99422 1.23351 0.96448 0.98994 1.00854 1.21395 0.93597 0.95260 0.91486 1.48094 1.06723 1.65330 1.11205 1.19315 0.95160 0.95684 0.77138 1.21474 1.42358 0.92391 1.00354 0.92377 1.24935 0.95095 0.98446 0.95608 1.69950 1.42785 1.35283 1.05236 0.86447 0.77652 0.85121 0.78247 1.19770 1.20946 1.20854 1.18244 0.82626 0.77934 0.87869 1.90740 1.56493 1.51992 1.42388 1.20254 0.94909 1.02577 0.94630 1.22413 1.00985 0.97431 0.92752 1.20986 0.95034 1.01799 0.96778 1.19970 0.93817 0.97696 0.95155 1.20186 0.97791 0.96055 0.92439 1.21608 0.97498 0.98975 0.96829 1.21541 1.00529 0.97196 0.96413 1.21549 0.98036 0.95612 1.00624 1.21541 0.98101 0.99086 0.96955 1.21613 1.00868 0.96508 0.95952 1.20874 0.99646 1.01002 0.92670 1.21236 0.94236 0.96474 0.96397 0.88576 0.88138 0.87363 0.89860 0.87931 0.94775 0.93641 0.92765 0.82475 0.85950 0.90481 0.91629 0.91772 0.92040 0.92044 0.92261 0.91994 0.92035 0.92021 0.91713 0.91623 0.85966 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 14.32 29.01 0.42 -1.81 16 2 C -0.18 -2.58 8.23 -36.03 -0.30 -2.87 16 3 C 0.11 1.79 5.33 -5.19 -0.03 1.76 16 4 N -0.58 -12.84 2.45 -177.55 -0.43 -13.28 16 5 C 0.25 6.57 5.21 -5.19 -0.03 6.54 16 6 C -0.53 -15.13 9.39 -34.45 -0.32 -15.45 16 7 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 10 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.55 12.15 7.46 -12.33 -0.09 12.05 16 15 O -0.54 -14.18 16.26 5.32 0.09 -14.09 16 16 C -0.12 -2.10 5.58 -104.97 -0.59 -2.68 16 17 C -0.12 -1.66 7.49 -39.18 -0.29 -1.95 16 18 C -0.13 -1.49 9.65 -39.64 -0.38 -1.87 16 19 C -0.07 -0.74 4.79 -104.53 -0.50 -1.24 16 20 C -0.05 -0.40 2.36 -91.76 -0.22 -0.61 16 21 C -0.11 -0.89 5.02 -26.73 -0.13 -1.02 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 23 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 24 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 25 C -0.11 -0.90 5.01 -26.72 -0.13 -1.03 16 26 C -0.12 -1.54 8.69 -39.64 -0.34 -1.88 16 27 C -0.06 -1.02 9.60 -39.19 -0.38 -1.39 16 28 H 0.10 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 30 H 0.11 1.50 7.58 -52.49 -0.40 1.10 16 31 H 0.08 1.45 7.78 -51.93 -0.40 1.05 16 32 H 0.10 1.53 4.07 -51.97 -0.21 1.31 16 33 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 36 H 0.16 2.07 2.83 -52.48 -0.15 1.92 16 37 H 0.12 1.11 7.94 -52.49 -0.42 0.70 16 38 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 39 H 0.06 0.54 7.37 -51.93 -0.38 0.16 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.55 7.37 -51.93 -0.38 0.17 16 49 H 0.12 1.26 7.07 -52.49 -0.37 0.89 16 50 H 0.13 2.12 7.92 -52.49 -0.42 1.71 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -32.96 394.58 -10.68 -43.64 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.10 Total: 1.47 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.89 Total: -14.64 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.30 Total: -39.33 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.96 -10.68 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359444334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.970 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds