Wall clock time and date at job start Sat Apr 11 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 C 1.52997 * 109.47408 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.47215 * 119.99340 * 2 1 3 6 6 H 1.08999 * 109.47241 * 183.81091 * 5 2 1 7 7 N 1.46897 * 109.46346 * 63.81411 * 5 2 1 8 8 C 1.46909 * 111.00021 * 104.10887 * 7 5 2 9 9 C 1.52997 * 109.47219 * 86.45434 * 8 7 5 10 10 C 1.50700 * 115.55011 * 39.52022 * 9 8 7 11 11 H 1.08005 * 119.99765 * 269.01144 * 10 9 8 12 12 C 1.37878 * 120.00509 * 89.01034 * 10 9 8 13 13 N 1.31518 * 119.99322 * 4.72445 * 12 10 9 14 14 Si 1.86800 * 120.00401 * 184.72454 * 12 10 9 15 15 H 1.48494 * 109.47066 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47087 * 119.99903 * 14 12 10 17 17 H 1.48503 * 109.46845 * 239.99885 * 14 12 10 18 18 C 1.52995 * 117.50207 * 253.80859 * 9 8 7 19 19 C 1.52996 * 60.00068 * 252.51328 * 18 9 8 20 20 C 1.50693 * 109.47318 * 303.81540 * 5 2 1 21 21 C 1.33997 * 124.92676 * 259.99702 * 20 5 2 22 22 C 1.46782 * 106.18888 * 179.97438 * 21 20 5 23 23 C 1.39402 * 134.37295 * 180.02562 * 22 21 20 24 24 C 1.36735 * 119.72109 * 179.97438 * 23 22 21 25 25 C 1.38749 * 120.41375 * 359.97438 * 24 23 22 26 26 C 1.37850 * 120.68664 * 0.02562 * 25 24 23 27 27 C 1.38942 * 119.81692 * 359.97438 * 26 25 24 28 28 O 1.34455 * 124.92007 * 79.68996 * 20 5 2 29 29 H 1.08997 * 109.47398 * 299.99856 * 1 2 3 30 30 H 1.09003 * 109.47276 * 60.00496 * 1 2 3 31 31 H 1.09002 * 109.47081 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47735 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46674 * 299.99873 * 3 2 1 34 34 H 1.09004 * 109.47505 * 59.99590 * 3 2 1 35 35 H 1.09000 * 109.46583 * 305.23912 * 4 2 1 36 36 H 1.08992 * 109.47210 * 65.24294 * 4 2 1 37 37 H 1.08999 * 109.47200 * 185.24656 * 4 2 1 38 38 H 1.00897 * 111.00975 * 340.15327 * 7 5 2 39 39 H 1.08997 * 109.47304 * 206.45793 * 8 7 5 40 40 H 1.09003 * 109.46654 * 326.45777 * 8 7 5 41 41 H 0.97001 * 119.99429 * 185.00134 * 13 12 10 42 42 H 1.09003 * 117.49988 * 0.02562 * 18 9 8 43 43 H 1.09000 * 117.50297 * 145.01902 * 18 9 8 44 44 H 1.09001 * 117.49861 * 252.50833 * 19 18 9 45 45 H 1.09003 * 117.52129 * 107.48212 * 19 18 9 46 46 H 1.08001 * 126.90303 * 359.96643 * 21 20 5 47 47 H 1.08001 * 120.13731 * 359.97438 * 23 22 21 48 48 H 1.07998 * 119.79588 * 180.02562 * 24 23 22 49 49 H 1.07999 * 119.65293 * 180.02562 * 25 24 23 50 50 H 1.07991 * 120.08873 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2494 6 1 3.1279 -0.6624 1.2842 7 7 1.6269 -2.1301 1.2042 8 6 2.7557 -2.9983 0.8431 9 6 3.5362 -3.3714 2.1050 10 6 2.6999 -3.6594 3.3252 11 1 2.4549 -2.8629 4.0122 12 6 2.2476 -4.9397 3.5645 13 7 2.6221 -5.9267 2.7801 14 14 1.1029 -5.2724 5.0027 15 1 0.8351 -4.0034 5.7260 16 1 -0.1756 -5.8344 4.4980 17 1 1.7398 -6.2439 5.9278 18 6 4.8934 -2.6989 2.3209 19 6 4.8255 -4.1755 1.9264 20 6 1.4620 -0.0673 2.4779 21 6 2.1086 0.8121 3.2551 22 6 1.1715 1.1811 4.3229 23 6 1.2343 2.0347 5.4231 24 6 0.1516 2.1564 6.2494 25 6 -1.0076 1.4363 5.9988 26 6 -1.0883 0.5874 4.9158 27 6 0.0005 0.4492 4.0637 28 8 0.2207 -0.2775 2.9498 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9565 0.8900 35 1 1.6021 -1.7182 -1.2973 36 1 1.7554 -0.1560 -2.1367 37 1 3.1260 -0.8033 -1.2034 38 1 0.8534 -2.2601 0.5696 39 1 2.3797 -3.9041 0.3674 40 1 3.4131 -2.4709 0.1519 41 1 2.2478 -6.8130 2.9035 42 1 5.2301 -1.9904 1.5641 43 1 5.1816 -2.4645 3.3457 44 1 5.0690 -4.9127 2.6915 45 1 5.1174 -4.4392 0.9098 46 1 3.1167 1.1761 3.1225 47 1 2.1343 2.5976 5.6221 48 1 0.1988 2.8177 7.1019 49 1 -1.8556 1.5421 6.6593 50 1 -1.9952 0.0313 4.7301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430750493.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:59:39 Heat of formation + Delta-G solvation = 52.071814 kcal Electronic energy + Delta-G solvation = -29520.659924 eV Core-core repulsion = 25900.916639 eV Total energy + Delta-G solvation = -3619.743284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11589 -38.83196 -37.43469 -36.36860 -32.88973 -32.46780 -31.67016 -30.13947 -29.66895 -27.31891 -27.02437 -26.29104 -25.18333 -23.32709 -22.60727 -21.47385 -21.00932 -20.75502 -18.93623 -18.74693 -17.01595 -16.47482 -16.13965 -15.81831 -15.43179 -15.26375 -14.51176 -14.26712 -14.12990 -13.84770 -13.70011 -13.55991 -13.18098 -13.02541 -12.84067 -12.50092 -12.30869 -12.08402 -11.91308 -11.87069 -11.74685 -11.60686 -11.42695 -11.24762 -10.93996 -10.83527 -10.75592 -10.65959 -10.58935 -10.45024 -10.34208 -10.00300 -9.70631 -9.42445 -8.85204 -8.32207 -8.19426 -7.92016 -7.75148 -7.54794 -5.83080 -3.82189 1.20719 1.63138 2.76571 3.14981 3.40837 3.48722 3.56943 3.96813 4.48896 4.60206 4.77349 4.82264 4.91319 4.96420 5.09774 5.12813 5.39068 5.39702 5.46958 5.50307 5.51640 5.54392 5.62118 5.65694 5.73569 5.81052 5.81352 5.94647 5.95062 6.02994 6.09047 6.11468 6.15728 6.22811 6.26081 6.35726 6.40140 6.48218 6.51061 6.56193 6.59561 6.63100 6.77837 6.80327 6.93106 6.98359 7.20735 7.44020 7.60632 7.67290 7.87046 8.10061 8.18519 8.67663 9.15681 9.79606 11.26238 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.005982 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.802730 B = 4679.618281 C = 6516.075145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.172 3.828 6 H 0.102 0.898 7 N -0.649 5.649 8 C 0.104 3.896 9 C 0.049 3.951 10 C -0.442 4.442 11 H 0.054 0.946 12 C 0.067 3.933 13 N -0.892 5.892 14 Si 0.881 3.119 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.290 1.290 18 C -0.221 4.221 19 C -0.150 4.150 20 C 0.106 3.894 21 C -0.234 4.234 22 C -0.119 4.119 23 C -0.079 4.079 24 C -0.142 4.142 25 C -0.108 4.108 26 C -0.104 4.104 27 C 0.048 3.952 28 O -0.171 6.171 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.332 0.668 39 H 0.065 0.935 40 H 0.013 0.987 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.150 0.850 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.128 0.872 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 15.716 -3.710 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.060 3.940 6 H 0.120 0.880 7 N -0.278 5.278 8 C -0.025 4.025 9 C 0.048 3.952 10 C -0.480 4.480 11 H 0.072 0.928 12 C -0.133 4.133 13 N -0.531 5.531 14 Si 0.709 3.291 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.217 1.217 18 C -0.258 4.258 19 C -0.188 4.188 20 C 0.056 3.944 21 C -0.254 4.254 22 C -0.120 4.120 23 C -0.097 4.097 24 C -0.160 4.160 25 C -0.126 4.126 26 C -0.123 4.123 27 C 0.000 4.000 28 O -0.070 6.070 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.146 0.854 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.968 15.189 -3.147 16.012 hybrid contribution -0.399 -0.155 0.032 0.429 sum -4.367 15.034 -3.116 15.963 Atomic orbital electron populations 1.21906 0.93972 1.02378 1.01704 1.21223 0.96685 0.96269 0.95297 1.21890 1.00966 0.95093 1.01953 1.21915 1.01282 1.00364 0.96388 1.20339 0.98275 0.89079 0.86273 0.87996 1.60074 1.09433 1.01499 1.56837 1.21656 0.90823 0.94214 0.95794 1.18932 0.85068 0.96754 0.94492 1.20173 1.29984 0.92842 1.05016 0.92755 1.24840 0.96185 0.96114 0.96164 1.70022 1.42639 1.00733 1.39737 0.86710 0.81154 0.77989 0.83198 1.19896 1.21291 1.21660 1.23084 1.07386 0.95786 0.99579 1.22446 1.05178 0.91975 0.99166 1.22422 0.81821 0.94020 0.96116 1.22017 1.00797 1.05406 0.97175 1.19933 0.94361 1.00009 0.97655 1.20208 0.98618 0.97556 0.93288 1.20653 0.93585 1.01522 1.00275 1.20791 0.98364 0.96785 0.96687 1.19910 0.96645 1.01366 0.94370 1.19683 0.96459 0.94569 0.89288 1.84079 1.31444 1.56562 1.34957 0.92082 0.92865 0.91997 0.92551 0.92731 0.92172 0.92261 0.92417 0.92358 0.84722 0.91646 0.96929 0.93661 0.92509 0.90830 0.89574 0.92504 0.83261 0.86092 0.85994 0.85428 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.86 37.16 0.29 -1.51 16 2 C -0.09 -1.18 0.54 -154.51 -0.08 -1.27 16 3 C -0.14 -1.59 8.24 37.16 0.31 -1.29 16 4 C -0.14 -1.66 7.26 37.16 0.27 -1.39 16 5 C 0.17 2.76 1.77 -68.87 -0.12 2.64 16 6 H 0.10 1.71 7.37 -51.93 -0.38 1.33 16 7 N -0.65 -12.20 5.30 -107.95 -0.57 -12.77 16 8 C 0.10 2.12 5.09 -3.82 -0.02 2.10 16 9 C 0.05 1.16 1.82 -155.67 -0.28 0.87 16 10 C -0.44 -12.10 8.18 -34.44 -0.28 -12.39 16 11 H 0.05 1.59 7.82 -52.48 -0.41 1.18 16 12 C 0.07 1.88 5.42 -17.82 -0.10 1.78 16 13 N -0.89 -25.54 12.31 55.43 0.68 -24.86 16 14 Si 0.88 22.42 29.54 -169.99 -5.02 17.40 16 15 H -0.27 -7.11 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 C -0.22 -4.80 9.83 -26.74 -0.26 -5.06 16 19 C -0.15 -3.52 8.99 -26.73 -0.24 -3.76 16 20 C 0.11 1.85 4.41 -35.80 -0.16 1.69 16 21 C -0.23 -3.91 10.26 -37.62 -0.39 -4.29 16 22 C -0.12 -1.99 6.40 -105.16 -0.67 -2.67 16 23 C -0.08 -1.11 10.05 -39.69 -0.40 -1.51 16 24 C -0.14 -1.78 9.98 -39.94 -0.40 -2.18 16 25 C -0.11 -1.38 10.01 -39.53 -0.40 -1.77 16 26 C -0.10 -1.57 10.07 -39.46 -0.40 -1.97 16 27 C 0.05 0.85 7.42 -38.47 -0.29 0.56 16 28 O -0.17 -3.21 9.12 3.89 0.04 -3.18 16 29 H 0.06 0.86 6.21 -51.93 -0.32 0.53 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.81 6.47 -51.93 -0.34 0.48 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.73 6.80 -51.93 -0.35 0.38 16 35 H 0.06 0.73 6.76 -51.93 -0.35 0.38 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 38 H 0.33 5.73 5.63 -39.29 -0.22 5.51 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.01 0.23 6.17 -51.93 -0.32 -0.09 16 41 H 0.25 7.05 8.32 -40.82 -0.34 6.71 16 42 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 44 H 0.09 2.24 7.95 -51.93 -0.41 1.83 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.15 2.18 8.06 -52.49 -0.42 1.75 16 47 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 49 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 50 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -30.29 393.63 -10.69 -40.98 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.13 Total: 7.89 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -3.62 Total: -31.40 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.11 Total: -37.62 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.29 -10.69 -40.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430750493.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.056 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds