Wall clock time and date at job start Sat Apr 11 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 C 1.52997 * 109.47408 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.47215 * 119.99340 * 2 1 3 6 6 H 1.08999 * 109.47241 * 183.81091 * 5 2 1 7 7 N 1.46897 * 109.46346 * 63.81411 * 5 2 1 8 8 C 1.46909 * 111.00021 * 104.10887 * 7 5 2 9 9 C 1.52997 * 109.47219 * 86.45434 * 8 7 5 10 10 C 1.50700 * 115.55011 * 39.52022 * 9 8 7 11 11 H 1.08005 * 119.99765 * 269.01144 * 10 9 8 12 12 C 1.37878 * 120.00509 * 89.01034 * 10 9 8 13 13 N 1.31518 * 119.99322 * 4.72445 * 12 10 9 14 14 Si 1.86800 * 120.00401 * 184.72454 * 12 10 9 15 15 H 1.48494 * 109.47066 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47087 * 119.99903 * 14 12 10 17 17 H 1.48503 * 109.46845 * 239.99885 * 14 12 10 18 18 C 1.52995 * 117.50207 * 253.80859 * 9 8 7 19 19 C 1.52996 * 60.00068 * 252.51328 * 18 9 8 20 20 C 1.50693 * 109.47318 * 303.81540 * 5 2 1 21 21 C 1.33997 * 124.92676 * 259.99702 * 20 5 2 22 22 C 1.46782 * 106.18888 * 179.97438 * 21 20 5 23 23 C 1.39402 * 134.37295 * 180.02562 * 22 21 20 24 24 C 1.36735 * 119.72109 * 179.97438 * 23 22 21 25 25 C 1.38749 * 120.41375 * 359.97438 * 24 23 22 26 26 C 1.37850 * 120.68664 * 0.02562 * 25 24 23 27 27 C 1.38942 * 119.81692 * 359.97438 * 26 25 24 28 28 O 1.34455 * 124.92007 * 79.68996 * 20 5 2 29 29 H 1.08997 * 109.47398 * 299.99856 * 1 2 3 30 30 H 1.09003 * 109.47276 * 60.00496 * 1 2 3 31 31 H 1.09002 * 109.47081 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47735 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46674 * 299.99873 * 3 2 1 34 34 H 1.09004 * 109.47505 * 59.99590 * 3 2 1 35 35 H 1.09000 * 109.46583 * 305.23912 * 4 2 1 36 36 H 1.08992 * 109.47210 * 65.24294 * 4 2 1 37 37 H 1.08999 * 109.47200 * 185.24656 * 4 2 1 38 38 H 1.00897 * 111.00975 * 340.15327 * 7 5 2 39 39 H 1.08997 * 109.47304 * 206.45793 * 8 7 5 40 40 H 1.09003 * 109.46654 * 326.45777 * 8 7 5 41 41 H 0.97001 * 119.99429 * 185.00134 * 13 12 10 42 42 H 1.09003 * 117.49988 * 0.02562 * 18 9 8 43 43 H 1.09000 * 117.50297 * 145.01902 * 18 9 8 44 44 H 1.09001 * 117.49861 * 252.50833 * 19 18 9 45 45 H 1.09003 * 117.52129 * 107.48212 * 19 18 9 46 46 H 1.08001 * 126.90303 * 359.96643 * 21 20 5 47 47 H 1.08001 * 120.13731 * 359.97438 * 23 22 21 48 48 H 1.07998 * 119.79588 * 180.02562 * 24 23 22 49 49 H 1.07999 * 119.65293 * 180.02562 * 25 24 23 50 50 H 1.07991 * 120.08873 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2494 6 1 3.1279 -0.6624 1.2842 7 7 1.6269 -2.1301 1.2042 8 6 2.7557 -2.9983 0.8431 9 6 3.5362 -3.3714 2.1050 10 6 2.6999 -3.6594 3.3252 11 1 2.4549 -2.8629 4.0122 12 6 2.2476 -4.9397 3.5645 13 7 2.6221 -5.9267 2.7801 14 14 1.1029 -5.2724 5.0027 15 1 0.8351 -4.0034 5.7260 16 1 -0.1756 -5.8344 4.4980 17 1 1.7398 -6.2439 5.9278 18 6 4.8934 -2.6989 2.3209 19 6 4.8255 -4.1755 1.9264 20 6 1.4620 -0.0673 2.4779 21 6 2.1086 0.8121 3.2551 22 6 1.1715 1.1811 4.3229 23 6 1.2343 2.0347 5.4231 24 6 0.1516 2.1564 6.2494 25 6 -1.0076 1.4363 5.9988 26 6 -1.0883 0.5874 4.9158 27 6 0.0005 0.4492 4.0637 28 8 0.2207 -0.2775 2.9498 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9565 0.8900 35 1 1.6021 -1.7182 -1.2973 36 1 1.7554 -0.1560 -2.1367 37 1 3.1260 -0.8033 -1.2034 38 1 0.8534 -2.2601 0.5696 39 1 2.3797 -3.9041 0.3674 40 1 3.4131 -2.4709 0.1519 41 1 2.2478 -6.8130 2.9035 42 1 5.2301 -1.9904 1.5641 43 1 5.1816 -2.4645 3.3457 44 1 5.0690 -4.9127 2.6915 45 1 5.1174 -4.4392 0.9098 46 1 3.1167 1.1761 3.1225 47 1 2.1343 2.5976 5.6221 48 1 0.1988 2.8177 7.1019 49 1 -1.8556 1.5421 6.6593 50 1 -1.9952 0.0313 4.7301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430750493.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:59:38 Heat of formation + Delta-G solvation = 37.566245 kcal Electronic energy + Delta-G solvation = -29521.288932 eV Core-core repulsion = 25900.916639 eV Total energy + Delta-G solvation = -3620.372293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.33713 -40.06255 -38.61290 -38.01420 -34.29650 -33.77554 -33.66875 -31.25138 -30.84655 -28.34271 -28.00273 -27.77376 -27.07736 -24.79782 -23.76160 -22.83127 -22.61543 -21.96692 -20.82097 -19.87933 -18.19435 -17.87253 -17.65634 -17.28818 -16.66558 -16.56191 -16.42997 -15.78971 -15.24147 -15.22311 -14.91516 -14.79764 -14.66242 -14.31200 -13.98371 -13.84612 -13.71694 -13.19320 -13.14802 -13.10216 -12.92545 -12.87065 -12.84630 -12.74278 -12.55727 -12.50349 -12.39152 -11.99678 -11.91938 -11.80320 -11.65723 -11.53280 -11.28720 -10.89810 -10.86271 -10.25617 -9.80245 -9.47008 -9.03066 -8.90208 -7.99303 -6.00771 0.07853 0.50185 1.33664 1.37506 1.48392 1.53184 1.96099 2.48176 2.85309 3.22487 3.31576 3.56854 3.66094 3.73755 3.82728 3.91327 4.05213 4.15691 4.26359 4.36493 4.40897 4.46531 4.49849 4.50935 4.58995 4.65322 4.76567 4.77913 4.78379 4.83177 4.87295 4.89315 4.99646 5.01087 5.03360 5.04553 5.11840 5.18257 5.27637 5.35047 5.35572 5.41351 5.43212 5.48138 5.55651 5.59957 5.70489 5.76002 5.89191 5.90213 6.27856 6.45401 6.63186 6.74924 6.99655 7.61634 9.09015 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.005982 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.802730 B = 4679.618281 C = 6516.075145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.139 4.139 5 C 0.177 3.823 6 H 0.096 0.904 7 N -0.669 5.669 8 C 0.120 3.880 9 C 0.025 3.975 10 C -0.441 4.441 11 H 0.027 0.973 12 C 0.027 3.973 13 N -0.912 5.912 14 Si 0.926 3.074 15 H -0.285 1.285 16 H -0.283 1.283 17 H -0.286 1.286 18 C -0.197 4.197 19 C -0.155 4.155 20 C 0.086 3.914 21 C -0.241 4.241 22 C -0.143 4.143 23 C -0.088 4.088 24 C -0.137 4.137 25 C -0.099 4.099 26 C -0.127 4.127 27 C 0.011 3.989 28 O -0.194 6.194 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.339 0.661 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.253 0.747 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.165 0.835 47 H 0.143 0.857 48 H 0.160 0.840 49 H 0.164 0.836 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 17.920 -3.813 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.196 4.196 5 C 0.066 3.934 6 H 0.114 0.886 7 N -0.299 5.299 8 C -0.009 4.009 9 C 0.024 3.976 10 C -0.479 4.479 11 H 0.046 0.954 12 C -0.170 4.170 13 N -0.553 5.553 14 Si 0.755 3.245 15 H -0.211 1.211 16 H -0.209 1.209 17 H -0.212 1.212 18 C -0.234 4.234 19 C -0.193 4.193 20 C 0.037 3.963 21 C -0.261 4.261 22 C -0.144 4.144 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.117 4.117 26 C -0.145 4.145 27 C -0.036 4.036 28 O -0.095 6.095 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.182 0.818 47 H 0.161 0.839 48 H 0.178 0.822 49 H 0.182 0.818 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.998 17.402 -3.246 18.148 hybrid contribution -0.428 -0.745 0.197 0.882 sum -4.426 16.657 -3.049 17.503 Atomic orbital electron populations 1.21855 0.94147 1.01686 1.01793 1.21148 0.96457 0.96957 0.94050 1.21846 1.01437 0.93874 1.02242 1.21897 1.01199 1.00044 0.96507 1.20356 0.97825 0.87747 0.87478 0.88617 1.59902 1.09320 1.03150 1.57553 1.21355 0.91221 0.94081 0.94248 1.19083 0.85601 0.98168 0.94791 1.20231 1.29971 0.91907 1.05827 0.95440 1.25304 0.97505 0.96292 0.97916 1.70087 1.43532 1.00781 1.40892 0.86008 0.80062 0.77171 0.81280 1.21062 1.20927 1.21194 1.23043 1.05182 0.95168 0.99972 1.22319 1.05429 0.92385 0.99161 1.22690 0.81811 0.94857 0.96906 1.22298 1.01375 1.05298 0.97084 1.20263 0.94195 1.01138 0.98847 1.20602 1.00222 0.97161 0.92635 1.21150 0.92620 1.01079 1.00589 1.21295 0.99633 0.94974 0.95761 1.20295 0.96549 1.02596 0.95080 1.20244 0.98002 0.95585 0.89809 1.84019 1.32206 1.57456 1.35817 0.93920 0.90702 0.93082 0.91755 0.90846 0.93438 0.93201 0.90237 0.92233 0.84014 0.93748 0.94191 0.93790 0.89039 0.91941 0.92763 0.90759 0.81796 0.83933 0.82225 0.81826 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 7.86 71.98 0.57 -2.85 16 2 C -0.08 -2.05 0.54 -52.18 -0.03 -2.08 16 3 C -0.14 -2.82 8.24 71.98 0.59 -2.23 16 4 C -0.14 -2.95 7.26 71.98 0.52 -2.43 16 5 C 0.18 5.65 1.77 44.17 0.08 5.73 16 6 H 0.10 3.13 7.37 -2.39 -0.02 3.11 16 7 N -0.67 -25.43 5.30 -495.44 -2.62 -28.05 16 8 C 0.12 4.87 5.09 86.30 0.44 5.31 16 9 C 0.02 1.17 1.82 -52.93 -0.10 1.08 16 10 C -0.44 -24.73 8.18 25.60 0.21 -24.52 16 11 H 0.03 1.66 7.82 -2.91 -0.02 1.64 16 12 C 0.03 1.57 5.42 84.65 0.46 2.03 16 13 N -0.91 -53.19 12.31 21.45 0.26 -52.92 16 14 Si 0.93 47.13 29.54 68.60 2.03 49.16 16 15 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 16 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 17 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 18 C -0.20 -8.33 9.83 30.59 0.30 -8.03 16 19 C -0.15 -7.28 8.99 30.59 0.28 -7.00 16 20 C 0.09 3.09 4.41 24.72 0.11 3.20 16 21 C -0.24 -8.14 10.26 23.54 0.24 -7.90 16 22 C -0.14 -4.85 6.40 -20.21 -0.13 -4.98 16 23 C -0.09 -2.36 10.05 22.20 0.22 -2.14 16 24 C -0.14 -3.03 9.98 22.04 0.22 -2.81 16 25 C -0.10 -2.29 10.01 22.30 0.22 -2.07 16 26 C -0.13 -3.80 10.07 22.35 0.23 -3.58 16 27 C 0.01 0.40 7.42 22.99 0.17 0.57 16 28 O -0.19 -7.64 9.12 -9.00 -0.08 -7.72 16 29 H 0.04 1.22 6.21 -2.39 -0.01 1.21 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.36 6.47 -2.39 -0.02 1.34 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.11 6.80 -2.38 -0.02 1.09 16 35 H 0.05 1.15 6.76 -2.39 -0.02 1.14 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.25 7.56 -2.39 -0.02 1.23 16 38 H 0.34 11.90 5.63 -89.70 -0.51 11.40 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.39 6.17 -2.39 -0.01 1.37 16 41 H 0.25 14.28 8.32 -92.71 -0.77 13.51 16 42 H 0.09 3.24 8.08 -2.39 -0.02 3.23 16 43 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.05 2.88 7.95 -2.39 -0.02 2.86 16 45 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.16 4.75 8.06 -2.91 -0.02 4.72 16 47 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 48 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 49 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 50 H 0.13 3.62 8.06 -2.92 -0.02 3.60 16 Total: -1.00 -67.60 393.63 4.60 -63.00 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.42 Total: 31.24 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 4.60 Total: -54.71 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.36 Total: -80.97 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.08 Total: -7.72 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -67.60 4.60 -63.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430750493.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.567 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds