Wall clock time and date at job start Sat Apr 11 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38145 * 119.89617 * 2 1 4 4 C 1.38211 * 119.93303 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.93643 * 0.02562 * 4 3 2 6 6 C 1.38319 * 120.26296 * 359.91182 * 5 4 3 7 7 C 1.38426 * 119.82980 * 0.17371 * 6 5 4 8 8 C 1.51361 * 109.77880 * 179.87161 * 7 6 5 9 9 H 1.09003 * 110.30620 * 223.80215 * 8 7 6 10 10 C 1.53003 * 110.30582 * 101.65062 * 8 7 6 11 11 C 1.54343 * 105.17428 * 342.72698 * 8 7 6 12 12 C 1.51372 * 130.50833 * 179.85364 * 6 5 4 13 13 H 1.08997 * 110.30115 * 78.39665 * 12 6 5 14 14 C 1.52997 * 110.30294 * 316.33830 * 12 6 5 15 15 C 1.50695 * 109.47082 * 71.84886 * 14 12 6 16 16 O 1.21283 * 120.00053 * 6.93805 * 15 14 12 17 17 N 1.34777 * 119.99954 * 186.93840 * 15 14 12 18 18 C 1.46500 * 120.00209 * 185.04053 * 17 15 14 19 19 C 1.52998 * 109.47267 * 174.75782 * 18 17 15 20 20 C 1.50698 * 115.55209 * 297.77987 * 19 18 17 21 21 H 1.07990 * 119.99976 * 118.68188 * 20 19 18 22 22 C 1.37880 * 119.99637 * 298.96366 * 20 19 18 23 23 N 1.31521 * 119.99897 * 180.27834 * 22 20 19 24 24 Si 1.86799 * 120.00425 * 0.27474 * 22 20 19 25 25 H 1.48496 * 109.47250 * 92.52466 * 24 22 20 26 26 H 1.48499 * 109.47305 * 212.52944 * 24 22 20 27 27 H 1.48501 * 109.46910 * 332.52692 * 24 22 20 28 28 C 1.53003 * 117.51719 * 83.48500 * 19 18 17 29 29 C 1.53002 * 60.00031 * 107.47776 * 28 19 18 30 30 H 1.09001 * 109.47622 * 269.98345 * 1 2 3 31 31 H 1.09000 * 109.46733 * 29.97715 * 1 2 3 32 32 H 1.08994 * 109.47670 * 149.97927 * 1 2 3 33 33 H 1.07994 * 120.02889 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.02938 * 180.02562 * 4 3 2 35 35 H 1.08007 * 119.89465 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46910 * 304.25258 * 10 8 7 37 37 H 1.08998 * 109.46866 * 64.25024 * 10 8 7 38 38 H 1.08997 * 109.47383 * 184.25543 * 10 8 7 39 39 H 1.09005 * 110.82354 * 268.13217 * 11 8 7 40 40 H 1.08996 * 110.82576 * 144.57922 * 11 8 7 41 41 H 1.09000 * 109.47193 * 311.84768 * 14 12 6 42 42 H 1.09002 * 109.46629 * 191.84579 * 14 12 6 43 43 H 0.96997 * 120.00334 * 5.03136 * 17 15 14 44 44 H 1.09001 * 109.47339 * 54.75434 * 18 17 15 45 45 H 1.08997 * 109.46841 * 294.75935 * 18 17 15 46 46 H 0.96994 * 119.99646 * 179.97438 * 23 22 20 47 47 H 1.09004 * 117.49691 * 214.96888 * 28 19 18 48 48 H 1.08998 * 117.49882 * 359.97438 * 28 19 18 49 49 H 1.08996 * 117.49715 * 252.50395 * 29 28 19 50 50 H 1.09006 * 117.49813 * 107.48924 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1976 0.0000 4 6 3.5777 1.1985 -0.0005 5 6 4.2678 0.0019 -0.0016 6 6 3.5812 -1.1988 -0.0003 7 6 2.1969 -1.2004 -0.0016 8 6 1.6864 -2.6254 -0.0029 9 1 0.8648 -2.7321 -0.7113 10 6 1.2332 -3.0284 1.4018 11 6 2.8896 -3.4852 -0.4447 12 6 4.0921 -2.6237 -0.0040 13 1 4.4172 -2.9114 0.9958 14 6 5.2445 -2.7719 -0.9994 15 6 6.4681 -2.0786 -0.4580 16 8 6.4625 -1.6305 0.6690 17 7 7.5688 -1.9566 -1.2261 18 6 8.7940 -1.3824 -0.6646 19 6 9.9208 -1.4776 -1.6952 20 6 10.3089 -2.8743 -2.1070 21 1 10.2067 -3.1816 -3.1372 22 6 10.7888 -3.7617 -1.1671 23 7 11.1327 -4.9790 -1.5274 24 14 10.9509 -3.2352 0.6177 25 1 9.7120 -3.5932 1.3539 26 1 12.1109 -3.9273 1.2347 27 1 11.1587 -1.7662 0.6835 28 6 10.0015 -0.3797 -2.7579 29 6 11.0311 -0.4270 -1.6271 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 1.6544 2.1322 -0.0004 34 1 4.1175 2.1339 -0.0001 35 1 5.3479 0.0034 -0.0024 36 1 2.0532 -2.8805 2.1044 37 1 0.3840 -2.4135 1.6999 38 1 0.9396 -4.0780 1.4017 39 1 2.8893 -3.6258 -1.5256 40 1 2.8905 -4.4449 0.0720 41 1 4.9628 -2.3213 -1.9510 42 1 5.4621 -3.8295 -1.1483 43 1 7.5498 -2.2491 -2.1508 44 1 9.0752 -1.9331 0.2330 45 1 8.6217 -0.3366 -0.4102 46 1 11.4707 -5.6031 -0.8663 47 1 10.3352 -0.6678 -3.7548 48 1 9.2514 0.4104 -2.7231 49 1 10.9585 0.3322 -0.8484 50 1 12.0422 -0.7462 -1.8801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431099679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:59:43 Heat of formation + Delta-G solvation = -6.249947 kcal Electronic energy + Delta-G solvation = -28259.014001 eV Core-core repulsion = 24636.741696 eV Total energy + Delta-G solvation = -3622.272306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73324 -39.04625 -37.09713 -36.35808 -33.62074 -33.34785 -32.21763 -31.36519 -29.55819 -27.89037 -26.94633 -26.24299 -25.07856 -23.79688 -21.94580 -21.63877 -20.73935 -19.84267 -19.36526 -19.03204 -16.97366 -16.44825 -16.02226 -15.92813 -15.23167 -15.16079 -15.11647 -14.52815 -14.48553 -13.92240 -13.70904 -13.61819 -13.14563 -13.03600 -12.92108 -12.73334 -12.59310 -12.41046 -12.26289 -12.12787 -12.04212 -11.88500 -11.74254 -11.48217 -11.10502 -10.94661 -10.82765 -10.69621 -10.59748 -10.56065 -10.36936 -10.27084 -9.68401 -9.34839 -9.17839 -8.78483 -8.55913 -8.48693 -8.45538 -8.26880 -6.20540 -4.23322 1.43149 1.47459 3.12140 3.27618 3.37157 3.41163 3.71749 3.83587 4.34673 4.35452 4.44783 4.79632 4.81682 4.88784 4.91954 5.02473 5.13997 5.17372 5.23472 5.28206 5.32950 5.39475 5.49247 5.53081 5.60224 5.62109 5.65696 5.68487 5.71966 5.73908 5.86895 5.89617 5.92801 5.97538 6.07755 6.10792 6.11943 6.18757 6.31892 6.32230 6.41911 6.47708 6.59748 6.64813 6.67690 6.81516 6.90406 7.04563 7.10922 7.16607 7.64096 8.17283 8.38220 8.77373 8.80912 9.42821 10.90520 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.003250 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.761252 B = 8613.668612 C = 9423.797766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.102 4.102 6 C -0.071 4.071 7 C -0.097 4.097 8 C -0.049 4.049 9 H 0.077 0.923 10 C -0.140 4.140 11 C -0.114 4.114 12 C -0.035 4.035 13 H 0.097 0.903 14 C -0.135 4.135 15 C 0.505 3.495 16 O -0.553 6.553 17 N -0.702 5.702 18 C 0.152 3.848 19 C -0.016 4.016 20 C -0.488 4.488 21 H 0.078 0.922 22 C 0.084 3.916 23 N -0.893 5.893 24 Si 0.872 3.128 25 H -0.277 1.277 26 H -0.293 1.293 27 H -0.254 1.254 28 C -0.181 4.181 29 C -0.188 4.188 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.406 0.594 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.266 0.734 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.401 6.961 1.391 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.119 4.119 6 C -0.071 4.071 7 C -0.097 4.097 8 C -0.067 4.067 9 H 0.095 0.905 10 C -0.197 4.197 11 C -0.152 4.152 12 C -0.054 4.054 13 H 0.115 0.885 14 C -0.175 4.175 15 C 0.292 3.708 16 O -0.433 6.433 17 N -0.351 5.351 18 C 0.029 3.971 19 C -0.017 4.017 20 C -0.525 4.525 21 H 0.096 0.904 22 C -0.120 4.120 23 N -0.529 5.529 24 Si 0.700 3.300 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.179 1.179 28 C -0.218 4.218 29 C -0.227 4.227 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.241 0.759 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.304 7.073 2.251 21.618 hybrid contribution 0.399 0.129 0.585 0.719 sum -19.905 7.202 2.836 21.357 Atomic orbital electron populations 1.20736 0.91769 1.02320 1.01902 1.19329 0.95487 0.91937 1.01307 1.20859 0.94269 0.96914 1.02400 1.21046 0.94132 0.97852 1.00838 1.21027 1.01191 0.91067 0.98656 1.20423 0.93461 0.94591 0.98656 1.20395 0.94058 0.93979 1.01279 1.20552 0.97843 0.90615 0.97705 0.90490 1.21762 1.01307 1.00851 0.95779 1.22487 0.93081 0.98066 1.01543 1.20505 0.93621 0.91149 1.00108 0.88545 1.21736 0.93167 1.02464 1.00128 1.20563 0.84597 0.79765 0.85920 1.90647 1.83659 1.49437 1.19576 1.45870 1.11090 1.62566 1.15578 1.21108 0.83681 0.95905 0.96415 1.19592 0.93964 0.92461 0.95730 1.20246 1.43352 0.92153 0.96767 0.90362 1.24903 0.93920 0.94444 0.98724 1.69879 1.43023 1.05272 1.34768 0.87011 0.77473 0.80107 0.85374 1.20361 1.22042 1.17860 1.22776 1.02304 1.01743 0.94950 1.23036 0.96140 1.03102 1.00392 0.91592 0.91953 0.91769 0.86432 0.86297 0.85142 0.92321 0.92677 0.92273 0.90614 0.90250 0.89127 0.88229 0.75934 0.92461 0.93587 0.92427 0.89615 0.90900 0.91163 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.87 36.01 0.36 -0.58 16 2 C -0.08 -0.93 5.88 -104.58 -0.62 -1.54 16 3 C -0.13 -1.48 9.69 -39.63 -0.38 -1.86 16 4 C -0.12 -1.58 10.05 -39.63 -0.40 -1.98 16 5 C -0.10 -1.53 9.06 -39.59 -0.36 -1.89 16 6 C -0.07 -1.00 5.47 -104.19 -0.57 -1.57 16 7 C -0.10 -1.19 5.32 -104.15 -0.55 -1.75 16 8 C -0.05 -0.49 2.97 -90.74 -0.27 -0.75 16 9 H 0.08 0.67 7.62 -51.93 -0.40 0.28 16 10 C -0.14 -1.27 9.14 37.16 0.34 -0.93 16 11 C -0.11 -1.15 6.11 -25.32 -0.15 -1.31 16 12 C -0.04 -0.46 2.48 -90.73 -0.23 -0.69 16 13 H 0.10 1.44 7.70 -51.93 -0.40 1.04 16 14 C -0.13 -1.83 5.04 -27.89 -0.14 -1.97 16 15 C 0.51 9.02 6.55 -10.99 -0.07 8.95 16 16 O -0.55 -11.49 13.53 5.55 0.08 -11.42 16 17 N -0.70 -13.13 5.42 -60.30 -0.33 -13.46 16 18 C 0.15 3.23 4.97 -4.04 -0.02 3.21 16 19 C -0.02 -0.36 0.84 -155.66 -0.13 -0.49 16 20 C -0.49 -12.70 9.20 -34.44 -0.32 -13.02 16 21 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 22 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 23 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 24 Si 0.87 21.65 24.54 -169.99 -4.17 17.48 16 25 H -0.28 -7.07 7.06 56.52 0.40 -6.67 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.25 -6.01 6.14 56.52 0.35 -5.66 16 28 C -0.18 -3.42 9.95 -26.73 -0.27 -3.68 16 29 C -0.19 -3.82 8.91 -26.73 -0.24 -4.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.06 0.49 7.29 -51.93 -0.38 0.12 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.13 2.22 5.27 -52.48 -0.28 1.95 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 40 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 41 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 42 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.41 7.02 8.38 -40.82 -0.34 6.68 16 44 H 0.06 1.36 4.10 -51.93 -0.21 1.15 16 45 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 50 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -30.71 390.93 -10.23 -40.94 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.35 Total: 9.67 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -4.12 Total: -23.71 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.45 Total: -38.84 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.17 Total: 17.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.71 -10.23 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431099679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.686 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds