Wall clock time and date at job start Sat Apr 11 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38153 * 119.89062 * 2 1 4 4 C 1.38210 * 119.93531 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.93120 * 359.97438 * 4 3 2 6 6 C 1.38256 * 120.28769 * 0.02901 * 5 4 3 7 7 C 1.38449 * 119.89275 * 179.97438 * 2 1 3 8 8 C 1.51361 * 130.40100 * 0.06043 * 7 2 1 9 9 H 1.08998 * 110.30901 * 281.70243 * 8 7 2 10 10 C 1.53005 * 110.38377 * 43.81042 * 8 7 2 11 11 C 1.54343 * 105.17396 * 162.77131 * 8 7 2 12 12 C 1.51368 * 130.56274 * 179.97438 * 6 5 4 13 13 H 1.09001 * 110.30122 * 316.15766 * 12 6 5 14 14 C 1.53001 * 110.30409 * 78.21348 * 12 6 5 15 15 C 1.50693 * 109.47372 * 292.22536 * 14 12 6 16 16 O 1.21281 * 120.00106 * 341.97219 * 15 14 12 17 17 N 1.34779 * 120.00336 * 162.24214 * 15 14 12 18 18 C 1.46499 * 120.00283 * 175.99962 * 17 15 14 19 19 C 1.53002 * 109.47167 * 185.54880 * 18 17 15 20 20 C 1.50695 * 115.54635 * 35.35828 * 19 18 17 21 21 H 1.08009 * 120.00078 * 265.34208 * 20 19 18 22 22 C 1.37879 * 119.99977 * 85.35430 * 20 19 18 23 23 N 1.31520 * 119.99715 * 176.42583 * 22 20 19 24 24 Si 1.86796 * 120.00092 * 356.41768 * 22 20 19 25 25 H 1.48502 * 109.46786 * 89.51112 * 24 22 20 26 26 H 1.48496 * 109.47202 * 209.50967 * 24 22 20 27 27 H 1.48495 * 109.47031 * 329.51604 * 24 22 20 28 28 C 1.52996 * 117.49530 * 249.65298 * 19 18 17 29 29 C 1.52995 * 117.49741 * 181.03063 * 19 18 17 30 30 H 1.08999 * 109.47721 * 263.46396 * 1 2 3 31 31 H 1.09005 * 109.46956 * 23.46822 * 1 2 3 32 32 H 1.09001 * 109.47158 * 143.46248 * 1 2 3 33 33 H 1.08001 * 120.03258 * 359.95293 * 3 2 1 34 34 H 1.07992 * 120.03333 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.89181 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47102 * 156.65475 * 10 8 7 37 37 H 1.09002 * 109.46564 * 276.65167 * 10 8 7 38 38 H 1.08994 * 109.47265 * 36.64845 * 10 8 7 39 39 H 1.08993 * 110.82754 * 268.13109 * 11 8 7 40 40 H 1.09006 * 110.98958 * 144.65603 * 11 8 7 41 41 H 1.09002 * 109.47198 * 172.22523 * 14 12 6 42 42 H 1.09000 * 109.47076 * 52.22688 * 14 12 6 43 43 H 0.97004 * 119.99713 * 356.00329 * 17 15 14 44 44 H 1.08997 * 109.47006 * 305.54976 * 18 17 15 45 45 H 1.09000 * 109.46982 * 65.54540 * 18 17 15 46 46 H 0.97002 * 119.99141 * 179.97438 * 23 22 20 47 47 H 1.08999 * 117.50373 * 359.97438 * 28 19 18 48 48 H 1.09003 * 117.50188 * 145.02403 * 28 19 18 49 49 H 1.09002 * 117.49574 * 214.97648 * 29 19 18 50 50 H 1.09003 * 117.50232 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1978 0.0000 4 6 3.5776 1.1988 0.0005 5 6 4.2678 0.0022 0.0016 6 6 3.5820 -1.1983 0.0015 7 6 2.1970 -1.2003 0.0005 8 6 1.6866 -2.6253 0.0000 9 1 1.3629 -2.9116 1.0006 10 6 0.5334 -2.7779 -0.9940 11 6 2.8902 -3.4853 -0.4402 12 6 4.0923 -2.6234 0.0020 13 1 4.9143 -2.7310 -0.7057 14 6 4.5466 -3.0242 1.4070 15 6 5.7739 -2.2344 1.7825 16 8 6.4292 -1.6864 0.9217 17 7 6.1464 -2.1416 3.0745 18 6 7.3866 -1.4483 3.4313 19 6 7.6451 -1.6050 4.9311 20 6 7.2334 -2.9264 5.5270 21 1 6.2636 -3.0310 5.9907 22 6 8.0949 -4.0020 5.4805 23 7 7.7647 -5.1345 6.0619 24 14 9.7308 -3.8506 4.5915 25 1 10.7662 -3.3662 5.5394 26 1 10.1294 -5.1782 4.0589 27 1 9.5971 -2.8869 3.4696 28 6 7.5003 -0.3588 5.8068 29 6 8.8892 -0.9267 5.5081 30 1 -0.3634 -0.1170 1.0209 31 1 -0.3633 0.9427 -0.4093 32 1 -0.3633 -0.8257 -0.6118 33 1 1.6542 2.1324 -0.0008 34 1 4.1173 2.1342 0.0001 35 1 5.3478 0.0038 0.0024 36 1 0.4501 -3.8219 -1.2963 37 1 -0.3968 -2.4608 -0.5226 38 1 0.7254 -2.1598 -1.8710 39 1 2.8908 -3.6269 -1.5209 40 1 2.8928 -4.4461 0.0748 41 1 4.7805 -4.0887 1.4234 42 1 3.7487 -2.8165 2.1199 43 1 5.5932 -2.5339 3.7681 44 1 8.2174 -1.8792 2.8724 45 1 7.2945 -0.3900 3.1870 46 1 8.3707 -5.8913 6.0288 47 1 7.2212 0.5728 5.3144 48 1 7.1071 -0.4945 6.8143 49 1 9.4097 -1.4361 6.3191 50 1 9.5238 -0.3692 4.8192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431099682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:59:53 Heat of formation + Delta-G solvation = -3.399611 kcal Electronic energy + Delta-G solvation = -28341.912762 eV Core-core repulsion = 24719.764056 eV Total energy + Delta-G solvation = -3622.148706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69335 -38.90835 -37.07250 -36.26230 -33.81751 -33.28359 -32.20322 -31.11300 -29.53070 -27.95027 -27.04866 -26.03414 -25.03336 -23.60340 -21.90487 -21.68747 -20.69939 -19.89037 -19.37966 -18.95460 -16.77371 -16.31822 -16.10920 -15.56750 -15.35790 -15.15034 -14.88613 -14.58916 -14.46361 -13.89113 -13.70624 -13.56501 -13.16773 -13.02309 -12.80695 -12.71654 -12.64026 -12.36470 -12.30686 -12.15776 -12.00263 -11.78134 -11.61293 -11.44968 -11.18801 -10.94587 -10.65160 -10.60258 -10.55433 -10.53656 -10.31589 -10.20039 -9.72552 -9.33231 -9.10536 -8.68266 -8.63161 -8.43920 -8.42823 -8.09404 -6.22443 -4.27497 1.46074 1.51431 3.24521 3.25693 3.35370 3.41017 3.81740 3.90771 4.35649 4.42727 4.47791 4.81717 4.84488 4.92925 4.95852 5.06093 5.08839 5.15102 5.26728 5.30972 5.35878 5.48515 5.50795 5.57102 5.62116 5.65719 5.72883 5.73859 5.79933 5.84903 5.89318 5.94902 5.98180 6.03059 6.08231 6.09680 6.16533 6.29094 6.31492 6.38060 6.44666 6.55377 6.64773 6.68245 6.70736 6.86352 6.91291 7.06985 7.15335 7.28765 7.65079 8.34971 8.35575 8.77470 8.92873 9.41600 10.88164 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.003341 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.872836 B = 8378.634747 C = 9066.720168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.098 4.098 6 C -0.077 4.077 7 C -0.095 4.095 8 C -0.051 4.051 9 H 0.085 0.915 10 C -0.147 4.147 11 C -0.113 4.113 12 C -0.037 4.037 13 H 0.091 0.909 14 C -0.129 4.129 15 C 0.507 3.493 16 O -0.563 6.563 17 N -0.696 5.696 18 C 0.150 3.850 19 C -0.016 4.016 20 C -0.493 4.493 21 H 0.079 0.921 22 C 0.085 3.915 23 N -0.893 5.893 24 Si 0.874 3.126 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.254 1.254 28 C -0.178 4.178 29 C -0.196 4.196 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.410 0.590 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.266 0.734 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 6.649 -12.688 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.116 4.116 6 C -0.077 4.077 7 C -0.095 4.095 8 C -0.070 4.070 9 H 0.103 0.897 10 C -0.204 4.204 11 C -0.150 4.150 12 C -0.055 4.055 13 H 0.109 0.891 14 C -0.169 4.169 15 C 0.293 3.707 16 O -0.443 6.443 17 N -0.346 5.346 18 C 0.026 3.974 19 C -0.017 4.017 20 C -0.530 4.530 21 H 0.096 0.904 22 C -0.118 4.118 23 N -0.529 5.529 24 Si 0.703 3.297 25 H -0.203 1.203 26 H -0.221 1.221 27 H -0.178 1.178 28 C -0.215 4.215 29 C -0.234 4.234 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.247 0.753 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.033 6.821 -13.222 19.779 hybrid contribution 0.902 -0.090 0.178 0.924 sum -12.131 6.731 -13.044 19.043 Atomic orbital electron populations 1.21053 0.91877 1.02860 1.02375 1.19310 0.95531 0.91869 1.01215 1.20888 0.94287 0.96928 1.02208 1.21043 0.94137 0.97841 1.01031 1.20966 1.01203 0.90986 0.98444 1.20432 0.93454 0.94639 0.99211 1.20459 0.94046 0.94012 1.00983 1.20630 0.95522 0.90929 0.99874 0.89734 1.21960 0.97699 1.01632 0.99062 1.22487 0.93045 0.98077 1.01427 1.20434 0.98058 0.90602 0.96436 0.89097 1.21658 0.96762 1.01187 0.97325 1.20472 0.86316 0.81072 0.82849 1.90573 1.56153 1.48272 1.49314 1.45980 1.25039 1.56236 1.07370 1.21076 0.86107 0.94306 0.95865 1.19620 0.98118 0.93956 0.89990 1.20138 1.03831 0.91196 1.37870 0.90351 1.24928 0.98021 0.94894 0.93991 1.69894 1.37395 1.02878 1.42719 0.86950 0.84230 0.77371 0.81193 1.20321 1.22061 1.17842 1.22880 1.00075 0.97100 1.01493 1.22952 0.91182 1.05296 1.03921 0.91579 0.92203 0.90437 0.86467 0.86327 0.84866 0.92337 0.92089 0.92403 0.90706 0.90188 0.88222 0.89556 0.75329 0.91889 0.93842 0.92436 0.90902 0.89506 0.89257 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.69 36.00 0.35 -0.77 16 2 C -0.08 -0.94 5.86 -104.58 -0.61 -1.55 16 3 C -0.13 -1.50 9.67 -39.62 -0.38 -1.89 16 4 C -0.12 -1.62 10.05 -39.63 -0.40 -2.02 16 5 C -0.10 -1.49 9.26 -39.61 -0.37 -1.86 16 6 C -0.08 -1.10 5.15 -104.19 -0.54 -1.64 16 7 C -0.09 -1.19 5.44 -104.12 -0.57 -1.75 16 8 C -0.05 -0.52 3.33 -90.74 -0.30 -0.82 16 9 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 10 C -0.15 -1.19 7.76 37.16 0.29 -0.90 16 11 C -0.11 -1.15 6.04 -25.30 -0.15 -1.30 16 12 C -0.04 -0.48 2.52 -90.72 -0.23 -0.71 16 13 H 0.09 1.32 7.73 -51.93 -0.40 0.91 16 14 C -0.13 -1.84 5.10 -27.89 -0.14 -1.98 16 15 C 0.51 9.27 7.21 -10.99 -0.08 9.19 16 16 O -0.56 -11.56 13.54 5.56 0.08 -11.49 16 17 N -0.70 -13.58 5.28 -60.30 -0.32 -13.90 16 18 C 0.15 3.16 5.52 -4.04 -0.02 3.14 16 19 C -0.02 -0.34 1.22 -155.67 -0.19 -0.53 16 20 C -0.49 -12.57 7.88 -34.44 -0.27 -12.84 16 21 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 22 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 23 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 24 Si 0.87 21.14 25.42 -169.99 -4.32 16.82 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.25 -5.97 5.06 56.52 0.29 -5.69 16 28 C -0.18 -3.48 9.88 -26.73 -0.26 -3.74 16 29 C -0.20 -4.03 7.79 -26.73 -0.21 -4.24 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.46 8.04 -51.93 -0.42 0.05 16 32 H 0.08 0.61 4.34 -51.93 -0.23 0.39 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.13 2.26 6.23 -52.49 -0.33 1.93 16 36 H 0.06 0.42 8.03 -51.93 -0.42 0.00 16 37 H 0.06 0.44 6.37 -51.93 -0.33 0.11 16 38 H 0.06 0.50 7.84 -51.93 -0.41 0.09 16 39 H 0.07 0.71 7.92 -51.93 -0.41 0.29 16 40 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 41 H 0.10 1.29 8.12 -51.93 -0.42 0.87 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.41 7.88 7.39 -40.82 -0.30 7.57 16 44 H 0.06 1.44 5.98 -51.93 -0.31 1.13 16 45 H 0.04 0.88 7.91 -51.93 -0.41 0.47 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 48 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 49 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 50 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -29.60 384.86 -10.41 -40.01 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.23 Total: 11.60 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -4.19 Total: -24.02 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.46 Total: -38.73 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.32 Total: 16.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.60 -10.41 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431099682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.615 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds