Wall clock time and date at job start Sat Apr 11 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47286 * 56.91745 * 3 2 1 5 5 C 1.35904 * 116.99686 * 179.97438 * 4 3 2 6 6 C 1.38734 * 120.05067 * 180.02562 * 5 4 3 7 7 C 1.38145 * 119.94237 * 179.74240 * 6 5 4 8 8 C 1.38264 * 120.05437 * 0.25588 * 7 6 5 9 9 C 1.50707 * 119.94209 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47009 * 90.00391 * 9 8 7 11 11 O 1.21284 * 119.99757 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00247 * 179.97438 * 10 9 8 13 13 C 1.46930 * 120.62735 * 359.71945 * 12 10 9 14 14 C 1.53620 * 108.53991 * 126.36510 * 13 12 10 15 15 C 1.53042 * 109.24152 * 54.85932 * 14 13 12 16 16 C 1.53040 * 109.53777 * 298.50441 * 15 14 13 17 17 H 1.08998 * 109.50164 * 301.41732 * 16 15 14 18 18 C 1.50702 * 109.52687 * 181.33009 * 16 15 14 19 19 H 1.08000 * 119.99660 * 0.15650 * 18 16 15 20 20 C 1.37874 * 120.00160 * 180.14704 * 18 16 15 21 21 N 1.31511 * 119.99719 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00061 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47059 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47096 * 120.00165 * 22 20 18 25 25 H 1.48494 * 109.47002 * 240.00031 * 22 20 18 26 26 C 1.46926 * 120.63295 * 179.97438 * 12 10 9 27 27 C 1.38268 * 120.11230 * 359.97438 * 8 7 6 28 28 C 1.38137 * 120.05826 * 0.02562 * 27 8 7 29 29 H 1.09002 * 109.47383 * 296.91396 * 3 2 1 30 30 H 1.09000 * 109.47103 * 176.91677 * 3 2 1 31 31 H 1.08002 * 120.03267 * 0.02580 * 6 5 4 32 32 H 1.07999 * 119.97317 * 180.23157 * 7 6 5 33 33 H 1.09006 * 109.46828 * 210.00172 * 9 8 7 34 34 H 1.08989 * 109.47354 * 330.00060 * 9 8 7 35 35 H 1.08992 * 109.58481 * 246.20321 * 13 12 10 36 36 H 1.08996 * 109.58439 * 6.62597 * 13 12 10 37 37 H 1.09001 * 109.64095 * 294.86437 * 14 13 12 38 38 H 1.09004 * 109.45826 * 174.73603 * 14 13 12 39 39 H 1.09001 * 109.46151 * 178.48771 * 15 14 13 40 40 H 1.08997 * 109.45056 * 58.52110 * 15 14 13 41 41 H 0.97011 * 120.00068 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.58318 * 353.37687 * 26 12 10 43 43 H 1.08999 * 109.58689 * 113.79684 * 26 12 10 44 44 H 1.08007 * 119.96697 * 180.02562 * 27 8 7 45 45 H 1.07992 * 120.03165 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0846 -0.7345 -1.1289 5 6 4.4320 -0.8306 -1.2783 6 6 4.9638 -1.5294 -2.3523 7 6 6.3338 -1.6211 -2.5050 8 6 7.1746 -1.0218 -1.5855 9 6 8.6687 -1.1230 -1.7548 10 6 9.1601 0.0363 -2.5828 11 8 8.3743 0.8631 -2.9952 12 7 10.4727 0.1545 -2.8650 13 6 11.4375 -0.8356 -2.3673 14 6 12.2480 -1.3692 -3.5581 15 6 12.8830 -0.1931 -4.3035 16 6 11.7835 0.7248 -4.8426 17 1 11.1298 0.1588 -5.5061 18 6 12.4080 1.8653 -5.6044 19 1 13.4821 1.9283 -5.6977 20 6 11.6082 2.8281 -6.1825 21 7 10.3003 2.7515 -6.0686 22 14 12.3823 4.2414 -7.1275 23 1 13.8602 4.0981 -7.1095 24 1 11.9005 4.2204 -8.5320 25 1 12.0015 5.5286 -6.4927 26 6 10.9668 1.2789 -3.6714 27 6 6.6470 -0.3288 -0.5116 28 6 5.2779 -0.2341 -0.3545 29 1 2.9715 -0.4644 0.9164 30 1 2.9708 1.0270 -0.0553 31 1 4.3075 -1.9974 -3.0711 32 1 6.7483 -2.1618 -3.3429 33 1 9.1477 -1.0992 -0.7759 34 1 8.9150 -2.0583 -2.2571 35 1 12.1068 -0.3640 -1.6480 36 1 10.9041 -1.6571 -1.8890 37 1 11.5900 -1.9156 -4.2338 38 1 13.0310 -2.0352 -3.1952 39 1 13.4810 -0.5695 -5.1335 40 1 13.5215 0.3672 -3.6207 41 1 9.7374 3.4287 -6.4757 42 1 10.1228 1.8529 -4.0538 43 1 11.5986 1.9198 -3.0565 44 1 7.3061 0.1389 0.2050 45 1 4.8663 0.3068 0.4847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:04:23 Heat of formation + Delta-G solvation = -20.177493 kcal Electronic energy + Delta-G solvation = -26948.632153 eV Core-core repulsion = 23124.496899 eV Total energy + Delta-G solvation = -3824.135255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.51310 -39.49248 -37.99595 -36.80376 -36.44015 -33.44641 -32.26714 -31.69046 -31.15644 -29.84835 -29.25460 -27.02584 -25.03889 -24.20684 -22.98172 -21.89947 -21.57876 -19.71231 -18.62476 -18.53793 -18.16111 -16.78538 -16.62821 -16.12897 -15.83066 -15.65313 -14.91089 -14.67298 -14.51267 -14.23482 -13.91491 -13.69381 -13.67434 -13.54343 -13.36521 -13.25999 -12.77423 -12.63090 -12.57756 -12.30726 -12.29128 -11.92943 -11.59954 -11.56539 -11.21288 -11.01447 -10.91923 -10.89763 -10.50164 -10.39450 -10.24567 -9.90138 -9.27515 -9.12327 -9.02801 -8.89542 -8.44094 -8.17539 -7.72765 -6.00351 -4.09199 1.30213 1.34503 1.75394 2.23728 3.01452 3.26628 3.29844 3.37826 3.40547 3.56054 3.68385 3.92758 4.42267 4.45969 4.60913 4.71769 4.75690 4.81934 5.10390 5.17639 5.27697 5.30106 5.34977 5.44300 5.49134 5.57311 5.65235 5.65675 5.96260 5.98321 6.12752 6.16213 6.25138 6.29479 6.58504 6.61413 6.62115 6.66652 6.84395 6.95201 6.96402 7.13057 7.16134 7.29829 7.64431 7.87133 7.99969 8.27533 8.38765 8.89993 8.96618 9.56592 11.04717 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002526 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.387837 B =11082.041825 C =12392.152033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.212 3.788 3 C 0.159 3.841 4 O -0.311 6.311 5 C 0.119 3.881 6 C -0.141 4.141 7 C -0.063 4.063 8 C -0.086 4.086 9 C -0.102 4.102 10 C 0.505 3.495 11 O -0.529 6.529 12 N -0.609 5.609 13 C 0.108 3.892 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.879 5.879 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.113 3.887 27 C -0.065 4.065 28 C -0.204 4.204 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.040 0.960 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 -10.567 14.825 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.107 4.107 3 C 0.080 3.920 4 O -0.224 6.224 5 C 0.075 3.925 6 C -0.160 4.160 7 C -0.081 4.081 8 C -0.086 4.086 9 C -0.142 4.142 10 C 0.291 3.709 11 O -0.406 6.406 12 N -0.342 5.342 13 C -0.016 4.016 14 C -0.172 4.172 15 C -0.149 4.149 16 C 0.020 3.980 17 H 0.046 0.954 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.517 5.517 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.007 4.007 27 C -0.084 4.084 28 C -0.223 4.223 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.058 0.942 44 H 0.143 0.857 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.316 -10.090 14.416 19.462 hybrid contribution 1.045 0.925 -0.421 1.458 sum -7.271 -9.165 13.994 18.240 Atomic orbital electron populations 1.81254 1.12483 1.07713 1.06452 1.28397 0.94279 0.93742 0.94256 1.19735 0.81852 0.99441 0.90922 1.86047 1.20651 1.70699 1.45014 1.18803 0.80440 0.97478 0.95788 1.20342 0.95116 1.02725 0.97811 1.20838 0.91956 0.97800 0.97547 1.19322 0.94313 0.99325 0.95678 1.20716 0.92721 0.99224 1.01519 1.20333 0.82483 0.86829 0.81260 1.90736 1.54116 1.43062 1.52652 1.48533 1.05744 1.27446 1.52487 1.21733 0.92053 0.91518 0.96282 1.22021 0.98971 0.98819 0.97399 1.21624 0.99181 0.95546 0.98501 1.18963 0.92215 0.94110 0.92662 0.95387 1.21115 0.93063 1.08517 1.33254 0.92358 1.25055 0.94858 0.98070 0.96078 1.69896 1.02965 1.34814 1.44005 0.86552 0.79423 0.82378 0.79755 1.19807 1.21018 1.20981 1.22254 1.01168 0.86458 0.90850 1.20756 0.94218 0.96166 0.97222 1.21108 0.94333 1.05726 1.01138 0.87242 0.87111 0.85132 0.85233 0.88615 0.88439 0.92062 0.91093 0.92132 0.92299 0.93076 0.93226 0.92717 0.85941 0.94192 0.85748 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.60 18.54 42.15 0.78 -3.82 16 2 C 0.21 1.82 15.82 -20.76 -0.33 1.49 16 3 C 0.16 0.92 5.21 34.37 0.18 1.10 16 4 O -0.31 -2.99 10.10 -19.44 -0.20 -3.19 16 5 C 0.12 1.28 6.69 -39.21 -0.26 1.02 16 6 C -0.14 -1.65 9.99 -39.43 -0.39 -2.04 16 7 C -0.06 -0.79 9.69 -39.61 -0.38 -1.17 16 8 C -0.09 -1.09 4.37 -104.60 -0.46 -1.54 16 9 C -0.10 -1.26 4.17 -29.03 -0.12 -1.38 16 10 C 0.50 9.27 7.69 -10.99 -0.08 9.19 16 11 O -0.53 -12.29 15.45 5.55 0.09 -12.21 16 12 N -0.61 -11.40 2.97 -172.53 -0.51 -11.91 16 13 C 0.11 1.52 6.37 -3.49 -0.02 1.49 16 14 C -0.13 -2.00 6.10 -26.39 -0.16 -2.16 16 15 C -0.11 -2.12 5.11 -26.69 -0.14 -2.25 16 16 C 0.04 0.95 2.25 -91.67 -0.21 0.75 16 17 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 18 C -0.52 -13.90 8.57 -34.44 -0.29 -14.20 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.42 11.39 55.43 0.63 -24.79 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.11 2.65 5.40 -3.73 -0.02 2.63 16 27 C -0.07 -0.74 9.69 -39.61 -0.38 -1.12 16 28 C -0.20 -1.97 9.04 -39.44 -0.36 -2.33 16 29 H 0.11 0.31 7.65 -51.93 -0.40 -0.09 16 30 H 0.11 0.43 7.67 -51.93 -0.40 0.03 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.10 0.93 7.87 -51.93 -0.41 0.52 16 34 H 0.10 1.02 7.65 -51.94 -0.40 0.62 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 42 H 0.12 3.41 5.12 -51.93 -0.27 3.14 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -34.27 376.16 -8.37 -42.63 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.28 Total: 0.49 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -3.53 Total: -8.93 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.90 Total: -40.52 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.11 Total: -15.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.27 -8.37 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.456 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds