Wall clock time and date at job start Sat Apr 11 2020 02:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48505 * 109.47352 * 270.00664 * 3 2 1 5 5 H 1.48506 * 109.46886 * 30.00190 * 3 2 1 6 6 H 1.48499 * 109.47393 * 150.00070 * 3 2 1 7 7 C 1.40277 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00469 * 169.74819 * 7 2 1 9 9 C 1.40889 * 119.99612 * 349.75163 * 7 2 1 10 10 C 1.40715 * 120.32968 * 330.52969 * 9 7 2 11 11 C 1.37594 * 119.88275 * 180.02562 * 10 9 7 12 12 C 1.38825 * 120.57001 * 359.97438 * 11 10 9 13 13 C 1.38221 * 120.67930 * 359.72556 * 12 11 10 14 14 C 1.39230 * 120.08647 * 0.55529 * 13 12 11 15 15 C 1.47433 * 120.27850 * 179.72368 * 14 13 12 16 16 O 1.21614 * 120.00018 * 142.85893 * 15 14 13 17 17 N 1.34777 * 120.00267 * 322.86196 * 15 14 13 18 18 C 1.47218 * 126.70016 * 355.04601 * 17 15 14 19 19 C 1.53795 * 106.35729 * 211.20542 * 18 17 15 20 20 H 1.09003 * 111.63618 * 219.84043 * 19 18 17 21 21 C 1.54193 * 109.12291 * 95.18384 * 19 18 17 22 22 C 1.54852 * 104.29757 * 223.09704 * 21 19 18 23 23 C 1.56220 * 103.18339 * 37.76056 * 22 21 19 24 24 C 1.54194 * 103.64616 * 322.66109 * 23 22 21 25 25 C 1.50696 * 111.61398 * 260.33105 * 24 23 22 26 26 N 1.34778 * 119.99894 * 298.58208 * 25 24 23 27 27 O 1.21284 * 120.00459 * 118.58785 * 25 24 23 28 28 C 1.47223 * 126.70159 * 175.00155 * 17 15 14 29 29 H 0.96998 * 120.00533 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.05521 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.65961 * 180.02562 * 12 11 10 33 33 H 1.07999 * 119.95848 * 180.27894 * 13 12 11 34 34 H 1.08998 * 110.08007 * 330.42664 * 18 17 15 35 35 H 1.09000 * 110.07840 * 91.92420 * 18 17 15 36 36 H 1.08995 * 110.46542 * 341.79803 * 21 19 18 37 37 H 1.08997 * 110.46267 * 104.26095 * 21 19 18 38 38 H 1.09001 * 110.75524 * 156.44682 * 22 21 19 39 39 H 1.09008 * 110.75310 * 279.81644 * 22 21 19 40 40 H 1.09004 * 111.85990 * 203.64438 * 23 22 21 41 41 H 1.09002 * 109.69727 * 80.63081 * 23 22 21 42 42 H 0.96995 * 119.99807 * 0.02562 * 26 25 24 43 43 H 0.96999 * 119.99790 * 179.72454 * 26 25 24 44 44 H 1.08997 * 110.08160 * 29.57303 * 28 17 15 45 45 H 1.08990 * 110.12716 * 268.03493 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4877 2.0465 -1.4001 5 1 1.4377 2.6526 0.7001 6 1 3.5378 1.4402 0.7000 7 6 2.0077 -1.2148 -0.0005 8 1 3.0747 -1.2222 -0.1670 9 6 1.3201 -2.4253 0.2160 10 6 0.1569 -2.4500 1.0075 11 6 -0.5071 -3.6374 1.2134 12 6 -0.0400 -4.8151 0.6459 13 6 1.0966 -4.8167 -0.1406 14 6 1.7935 -3.6320 -0.3624 15 6 3.0098 -3.6299 -1.1956 16 8 3.2398 -2.6909 -1.9335 17 7 3.8669 -4.6685 -1.1397 18 6 3.7891 -5.8254 -0.2326 19 6 5.2387 -6.2639 0.0353 20 1 5.3333 -7.3497 0.0539 21 6 5.7298 -5.6127 1.3438 22 6 7.1661 -5.1345 1.0174 23 6 7.0481 -4.6329 -0.4573 24 6 6.0736 -5.6365 -1.1060 25 6 6.8058 -6.6856 -1.9024 26 7 7.5641 -6.3243 -2.9564 27 8 6.7127 -7.8551 -1.5949 28 6 5.0631 -4.8682 -1.9743 29 1 -0.4851 0.8400 0.0004 30 1 -0.2140 -1.5385 1.4526 31 1 -1.3993 -3.6534 1.8217 32 1 -0.5730 -5.7389 0.8169 33 1 1.4471 -5.7389 -0.5800 34 1 3.3069 -5.5370 0.7014 35 1 3.2337 -6.6352 -0.7056 36 1 5.0971 -4.7656 1.6088 37 1 5.7438 -6.3443 2.1517 38 1 7.4630 -4.3225 1.6812 39 1 7.8722 -5.9628 1.0786 40 1 8.0099 -4.6499 -0.9700 41 1 6.6255 -3.6283 -0.4710 42 1 7.6387 -5.3889 -3.2021 43 1 8.0385 -6.9992 -3.4666 44 1 5.4791 -3.9047 -2.2687 45 1 4.8099 -5.4521 -2.8591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887941474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:05:54 Heat of formation + Delta-G solvation = -58.211797 kcal Electronic energy + Delta-G solvation = -28887.464990 eV Core-core repulsion = 25061.680444 eV Total energy + Delta-G solvation = -3825.784546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05769 -38.95802 -37.73847 -36.58578 -34.37395 -33.95952 -33.66665 -30.95511 -30.02607 -29.70538 -28.93399 -25.80867 -25.43647 -24.15786 -22.38952 -21.49035 -20.99618 -20.67849 -19.05739 -18.89580 -17.65761 -17.18770 -16.69143 -16.06021 -15.61378 -15.31194 -15.07376 -14.87583 -14.63396 -14.29128 -14.09232 -13.76463 -13.55895 -13.18981 -12.83801 -12.63817 -12.50619 -12.23463 -11.77634 -11.62754 -11.41753 -11.21676 -11.12901 -11.07242 -11.02860 -10.88690 -10.85113 -10.70873 -10.59775 -10.50835 -10.00913 -9.93719 -9.87164 -9.66165 -9.28915 -8.70116 -8.11168 -7.56552 -7.43464 -6.82005 -4.43386 2.41820 2.46036 2.80738 3.05888 3.11184 3.21110 3.26868 3.66173 3.91768 3.94808 4.15286 4.45836 4.54193 4.61929 4.91069 5.13480 5.17282 5.23399 5.31470 5.52985 5.59260 5.62794 5.68843 5.77144 5.80469 5.87319 6.01651 6.03027 6.03699 6.10981 6.17235 6.18120 6.33035 6.42423 6.52469 6.59291 6.88501 6.97336 7.10681 7.12750 7.20851 7.45229 7.66813 7.88758 7.96743 8.08028 8.13524 8.26530 8.56029 8.77200 8.84334 9.21896 10.10982 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.004183 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.388793 B = 6692.818020 C = 7619.631296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.085 0.915 9 C 0.147 3.853 10 C -0.155 4.155 11 C -0.093 4.093 12 C -0.248 4.248 13 C -0.058 4.058 14 C -0.257 4.257 15 C 0.596 3.404 16 O -0.535 6.535 17 N -0.623 5.623 18 C 0.110 3.890 19 C -0.089 4.089 20 H 0.108 0.892 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.098 4.098 25 C 0.542 3.458 26 N -0.854 5.854 27 O -0.539 6.539 28 C 0.124 3.876 29 H 0.283 0.717 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.403 0.597 43 H 0.401 0.599 44 H 0.085 0.915 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 -7.766 -0.187 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.449 4.449 8 H 0.103 0.897 9 C 0.143 3.857 10 C -0.174 4.174 11 C -0.112 4.112 12 C -0.267 4.267 13 C -0.077 4.077 14 C -0.262 4.262 15 C 0.391 3.609 16 O -0.412 6.412 17 N -0.359 5.359 18 C -0.014 4.014 19 C -0.108 4.108 20 H 0.127 0.873 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.147 4.147 24 C -0.102 4.102 25 C 0.327 3.673 26 N -0.417 5.417 27 O -0.415 6.415 28 C -0.001 4.001 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.232 0.768 43 H 0.231 0.769 44 H 0.104 0.896 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.957 -7.670 -0.272 14.208 hybrid contribution 0.467 0.778 -0.594 1.085 sum 12.424 -6.892 -0.866 14.234 Atomic orbital electron populations 1.69697 1.07696 1.29553 1.34413 1.26014 0.94806 1.01615 0.92065 0.86192 0.80409 0.80004 0.79471 1.19220 1.20109 1.18412 1.19705 0.96469 0.90011 1.38707 0.89729 1.17400 0.90447 0.90808 0.87007 1.21401 0.98124 0.96730 1.01191 1.20811 0.98064 0.93422 0.98878 1.20279 1.00967 0.96960 1.08518 1.20744 0.95263 0.95281 0.96398 1.19319 1.00429 0.95660 1.10782 1.18253 0.82104 0.78927 0.81622 1.90706 1.75740 1.33783 1.40960 1.48518 1.26239 1.23033 1.38137 1.22204 0.95491 0.88281 0.95384 1.22616 0.93657 1.01466 0.93066 0.87347 1.22447 0.96121 1.00538 0.96307 1.22696 0.97270 1.00447 0.95474 1.22733 0.97661 0.98443 0.95856 1.22149 0.96414 0.94973 0.96693 1.20139 0.78025 0.89289 0.79879 1.43850 1.51893 1.12917 1.33078 1.90708 1.63020 1.19287 1.68507 1.21753 0.85872 0.99656 0.92791 0.90613 0.85886 0.89144 0.89155 0.88826 0.89197 0.92227 0.90501 0.91174 0.91115 0.91715 0.91220 0.89796 0.76837 0.76874 0.89644 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.18 10.86 55.56 0.60 -19.58 16 2 C 0.07 1.86 5.26 -17.30 -0.09 1.77 16 3 Si 0.92 19.14 29.57 -169.99 -5.03 14.11 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.42 -11.29 7.73 -37.81 -0.29 -11.58 16 8 H 0.08 2.32 6.69 -52.49 -0.35 1.97 16 9 C 0.15 3.88 5.56 -106.54 -0.59 3.29 16 10 C -0.16 -3.90 8.65 -38.88 -0.34 -4.23 16 11 C -0.09 -2.08 10.01 -39.60 -0.40 -2.48 16 12 C -0.25 -5.27 10.03 -39.37 -0.39 -5.66 16 13 C -0.06 -1.25 8.04 -39.22 -0.32 -1.57 16 14 C -0.26 -6.22 5.44 -104.37 -0.57 -6.78 16 15 C 0.60 13.68 7.09 -12.52 -0.09 13.59 16 16 O -0.54 -13.97 15.19 5.27 0.08 -13.89 16 17 N -0.62 -11.17 3.32 -172.82 -0.57 -11.74 16 18 C 0.11 1.68 4.61 -3.24 -0.01 1.66 16 19 C -0.09 -1.16 3.45 -88.69 -0.31 -1.46 16 20 H 0.11 1.46 6.73 -51.93 -0.35 1.11 16 21 C -0.12 -1.40 6.27 -25.13 -0.16 -1.56 16 22 C -0.12 -1.29 6.92 -24.03 -0.17 -1.46 16 23 C -0.11 -1.18 5.95 -24.38 -0.15 -1.32 16 24 C -0.10 -1.20 0.79 -153.72 -0.12 -1.32 16 25 C 0.54 6.45 6.69 -10.99 -0.07 6.37 16 26 N -0.85 -6.73 8.58 31.22 0.27 -6.46 16 27 O -0.54 -8.26 16.29 5.55 0.09 -8.17 16 28 C 0.12 1.79 5.95 -3.23 -0.02 1.77 16 29 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 30 H 0.12 3.16 6.25 -52.48 -0.33 2.83 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.09 1.78 6.08 -52.49 -0.32 1.46 16 34 H 0.09 1.45 6.26 -51.93 -0.33 1.12 16 35 H 0.06 0.87 7.41 -51.93 -0.38 0.49 16 36 H 0.08 1.05 7.52 -51.93 -0.39 0.66 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.07 0.60 7.62 -51.93 -0.40 0.20 16 41 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 42 H 0.40 2.34 8.77 -40.82 -0.36 1.98 16 43 H 0.40 2.58 8.93 -40.82 -0.36 2.21 16 44 H 0.09 1.25 7.28 -51.93 -0.38 0.87 16 45 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -31.77 357.36 -9.25 -41.01 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.99 Total: 10.31 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -4.08 Total: -10.97 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.30 Total: -37.78 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.17 Total: -22.07 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.77 -9.25 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887941474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.200 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds