Wall clock time and date at job start Sat Apr 11 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48505 * 109.47352 * 270.00664 * 3 2 1 5 5 H 1.48506 * 109.46886 * 30.00190 * 3 2 1 6 6 H 1.48499 * 109.47393 * 150.00070 * 3 2 1 7 7 C 1.40277 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00469 * 169.74819 * 7 2 1 9 9 C 1.40889 * 119.99612 * 349.75163 * 7 2 1 10 10 C 1.40715 * 120.32968 * 330.52969 * 9 7 2 11 11 C 1.37594 * 119.88275 * 180.02562 * 10 9 7 12 12 C 1.38825 * 120.57001 * 359.97438 * 11 10 9 13 13 C 1.38221 * 120.67930 * 359.72556 * 12 11 10 14 14 C 1.39230 * 120.08647 * 0.55529 * 13 12 11 15 15 C 1.47433 * 120.27850 * 179.72368 * 14 13 12 16 16 O 1.21614 * 120.00018 * 142.85893 * 15 14 13 17 17 N 1.34777 * 120.00267 * 322.86196 * 15 14 13 18 18 C 1.47218 * 126.70016 * 355.04601 * 17 15 14 19 19 C 1.53795 * 106.35729 * 211.20542 * 18 17 15 20 20 H 1.09003 * 111.63618 * 219.84043 * 19 18 17 21 21 C 1.54193 * 109.12291 * 95.18384 * 19 18 17 22 22 C 1.54852 * 104.29757 * 223.09704 * 21 19 18 23 23 C 1.56220 * 103.18339 * 37.76056 * 22 21 19 24 24 C 1.54194 * 103.64616 * 322.66109 * 23 22 21 25 25 C 1.50696 * 111.61398 * 260.33105 * 24 23 22 26 26 N 1.34778 * 119.99894 * 298.58208 * 25 24 23 27 27 O 1.21284 * 120.00459 * 118.58785 * 25 24 23 28 28 C 1.47223 * 126.70159 * 175.00155 * 17 15 14 29 29 H 0.96998 * 120.00533 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.05521 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.65961 * 180.02562 * 12 11 10 33 33 H 1.07999 * 119.95848 * 180.27894 * 13 12 11 34 34 H 1.08998 * 110.08007 * 330.42664 * 18 17 15 35 35 H 1.09000 * 110.07840 * 91.92420 * 18 17 15 36 36 H 1.08995 * 110.46542 * 341.79803 * 21 19 18 37 37 H 1.08997 * 110.46267 * 104.26095 * 21 19 18 38 38 H 1.09001 * 110.75524 * 156.44682 * 22 21 19 39 39 H 1.09008 * 110.75310 * 279.81644 * 22 21 19 40 40 H 1.09004 * 111.85990 * 203.64438 * 23 22 21 41 41 H 1.09002 * 109.69727 * 80.63081 * 23 22 21 42 42 H 0.96995 * 119.99807 * 0.02562 * 26 25 24 43 43 H 0.96999 * 119.99790 * 179.72454 * 26 25 24 44 44 H 1.08997 * 110.08160 * 29.57303 * 28 17 15 45 45 H 1.08990 * 110.12716 * 268.03493 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4877 2.0465 -1.4001 5 1 1.4377 2.6526 0.7001 6 1 3.5378 1.4402 0.7000 7 6 2.0077 -1.2148 -0.0005 8 1 3.0747 -1.2222 -0.1670 9 6 1.3201 -2.4253 0.2160 10 6 0.1569 -2.4500 1.0075 11 6 -0.5071 -3.6374 1.2134 12 6 -0.0400 -4.8151 0.6459 13 6 1.0966 -4.8167 -0.1406 14 6 1.7935 -3.6320 -0.3624 15 6 3.0098 -3.6299 -1.1956 16 8 3.2398 -2.6909 -1.9335 17 7 3.8669 -4.6685 -1.1397 18 6 3.7891 -5.8254 -0.2326 19 6 5.2387 -6.2639 0.0353 20 1 5.3333 -7.3497 0.0539 21 6 5.7298 -5.6127 1.3438 22 6 7.1661 -5.1345 1.0174 23 6 7.0481 -4.6329 -0.4573 24 6 6.0736 -5.6365 -1.1060 25 6 6.8058 -6.6856 -1.9024 26 7 7.5641 -6.3243 -2.9564 27 8 6.7127 -7.8551 -1.5949 28 6 5.0631 -4.8682 -1.9743 29 1 -0.4851 0.8400 0.0004 30 1 -0.2140 -1.5385 1.4526 31 1 -1.3993 -3.6534 1.8217 32 1 -0.5730 -5.7389 0.8169 33 1 1.4471 -5.7389 -0.5800 34 1 3.3069 -5.5370 0.7014 35 1 3.2337 -6.6352 -0.7056 36 1 5.0971 -4.7656 1.6088 37 1 5.7438 -6.3443 2.1517 38 1 7.4630 -4.3225 1.6812 39 1 7.8722 -5.9628 1.0786 40 1 8.0099 -4.6499 -0.9700 41 1 6.6255 -3.6283 -0.4710 42 1 7.6387 -5.3889 -3.2021 43 1 8.0385 -6.9992 -3.4666 44 1 5.4791 -3.9047 -2.2687 45 1 4.8099 -5.4521 -2.8591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887941474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:05:51 Heat of formation + Delta-G solvation = -79.266923 kcal Electronic energy + Delta-G solvation = -28888.378009 eV Core-core repulsion = 25061.680444 eV Total energy + Delta-G solvation = -3826.697565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -42.18946 -40.46324 -39.06215 -38.29135 -35.84886 -35.37459 -34.83710 -32.28394 -31.70477 -31.23282 -30.29850 -27.44043 -26.76060 -25.58906 -23.50046 -23.01909 -22.73693 -21.70867 -20.46423 -20.06976 -19.15573 -18.64770 -17.66341 -17.53707 -17.20709 -16.61068 -16.52138 -16.21205 -15.97738 -15.73627 -15.25613 -15.01326 -14.83302 -14.69059 -14.37576 -14.27208 -14.03664 -13.80057 -13.45317 -13.06197 -12.85752 -12.79181 -12.64038 -12.44203 -12.26311 -12.11528 -12.07277 -11.90501 -11.87440 -11.77332 -11.57955 -11.44021 -11.14026 -10.98973 -10.68185 -10.48534 -9.64815 -9.36899 -9.28335 -8.67278 -6.38545 0.59028 1.01915 1.33283 1.45970 1.49291 1.50493 2.04384 2.18661 2.22182 2.53988 2.73965 3.10349 3.41708 3.54693 3.70016 4.00540 4.07426 4.10324 4.20661 4.26767 4.31078 4.39363 4.53283 4.60094 4.61153 4.64794 4.70944 4.81023 4.86592 4.87257 4.96358 5.09238 5.12607 5.16665 5.18956 5.24788 5.34234 5.42527 5.50309 5.61673 5.86191 5.88176 6.03407 6.11472 6.29777 6.37165 6.55209 6.69607 6.87634 6.95209 7.27579 7.47887 8.28057 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.004183 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.388793 B = 6692.818020 C = 7619.631296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.256 1.256 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.064 0.936 9 C 0.117 3.883 10 C -0.181 4.181 11 C -0.091 4.091 12 C -0.239 4.239 13 C -0.056 4.056 14 C -0.273 4.273 15 C 0.592 3.408 16 O -0.579 6.579 17 N -0.618 5.618 18 C 0.106 3.894 19 C -0.083 4.083 20 H 0.112 0.888 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.107 4.107 24 C -0.089 4.089 25 C 0.546 3.454 26 N -0.833 5.833 27 O -0.573 6.573 28 C 0.120 3.880 29 H 0.290 0.710 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.412 0.588 44 H 0.082 0.918 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.572 -9.435 -0.157 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.179 1.179 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.114 3.886 10 C -0.201 4.201 11 C -0.109 4.109 12 C -0.258 4.258 13 C -0.075 4.075 14 C -0.278 4.278 15 C 0.386 3.614 16 O -0.460 6.460 17 N -0.352 5.352 18 C -0.016 4.016 19 C -0.103 4.103 20 H 0.130 0.870 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.145 4.145 24 C -0.093 4.093 25 C 0.330 3.670 26 N -0.396 5.396 27 O -0.452 6.452 28 C -0.003 4.003 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.246 0.754 43 H 0.245 0.755 44 H 0.100 0.900 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.245 -9.374 -0.249 16.229 hybrid contribution 0.058 1.085 -0.631 1.257 sum 13.303 -8.288 -0.881 15.698 Atomic orbital electron populations 1.69729 1.08677 1.30700 1.35356 1.26741 0.95636 1.04319 0.91374 0.85266 0.79294 0.76296 0.79228 1.19585 1.17941 1.18369 1.19703 0.95737 0.91583 1.41529 0.91790 1.17759 0.91388 0.91682 0.87809 1.21365 0.98889 0.97470 1.02369 1.21157 0.98454 0.92829 0.98484 1.20737 1.00369 0.97927 1.06728 1.21044 0.94989 0.95380 0.96058 1.19661 1.01434 0.96069 1.10614 1.18137 0.82613 0.79512 0.81126 1.90664 1.76797 1.35697 1.42814 1.48346 1.26129 1.22271 1.38449 1.22374 0.97450 0.87347 0.94462 1.22573 0.92138 1.01629 0.93927 0.86992 1.22434 0.96694 1.00021 0.96322 1.22700 0.96437 1.01104 0.95259 1.22744 0.98433 0.96911 0.96367 1.22059 0.96075 0.95092 0.96098 1.19940 0.78277 0.88354 0.80436 1.43673 1.50307 1.14096 1.31561 1.90705 1.64517 1.20356 1.69655 1.21944 0.85142 1.00130 0.93077 0.89867 0.87402 0.86318 0.85376 0.86060 0.90233 0.91028 0.92835 0.89621 0.90418 0.90383 0.88465 0.91667 0.75362 0.75544 0.89958 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.50 10.86 21.88 0.24 -43.26 16 2 C 0.03 1.82 5.26 85.37 0.45 2.27 16 3 Si 0.98 40.59 29.57 68.60 2.03 42.62 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.46 -25.93 7.73 23.42 0.18 -25.75 16 8 H 0.06 3.76 6.69 -2.91 -0.02 3.74 16 9 C 0.12 6.44 5.56 -21.11 -0.12 6.32 16 10 C -0.18 -9.38 8.65 22.72 0.20 -9.18 16 11 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 12 C -0.24 -9.60 10.03 22.41 0.22 -9.38 16 13 C -0.06 -2.36 8.04 22.50 0.18 -2.18 16 14 C -0.27 -13.51 5.44 -19.70 -0.11 -13.62 16 15 C 0.59 28.00 7.09 86.67 0.61 28.62 16 16 O -0.58 -31.66 15.19 -4.07 -0.06 -31.72 16 17 N -0.62 -22.20 3.32 -818.92 -2.72 -24.92 16 18 C 0.11 3.15 4.61 86.51 0.40 3.55 16 19 C -0.08 -2.05 3.45 -9.54 -0.03 -2.09 16 20 H 0.11 2.79 6.73 -2.39 -0.02 2.77 16 21 C -0.12 -2.68 6.27 31.63 0.20 -2.48 16 22 C -0.12 -2.26 6.92 32.35 0.22 -2.04 16 23 C -0.11 -2.12 5.95 32.12 0.19 -1.93 16 24 C -0.09 -2.02 0.79 -51.67 -0.04 -2.06 16 25 C 0.55 11.63 6.69 87.66 0.59 12.21 16 26 N -0.83 -10.70 8.58 -173.53 -1.49 -12.19 16 27 O -0.57 -16.26 16.29 -3.04 -0.05 -16.31 16 28 C 0.12 3.40 5.95 86.51 0.51 3.92 16 29 H 0.29 13.87 8.29 -92.71 -0.77 13.10 16 30 H 0.11 5.80 6.25 -2.91 -0.02 5.78 16 31 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.12 4.34 6.08 -2.91 -0.02 4.32 16 34 H 0.08 2.53 6.26 -2.39 -0.01 2.52 16 35 H 0.07 1.96 7.41 -2.39 -0.02 1.95 16 36 H 0.05 1.48 7.52 -2.39 -0.02 1.46 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.10 1.38 7.62 -2.39 -0.02 1.36 16 41 H 0.06 1.57 7.53 -2.39 -0.02 1.55 16 42 H 0.42 3.57 8.77 -92.71 -0.81 2.76 16 43 H 0.41 4.04 8.93 -92.71 -0.83 3.21 16 44 H 0.08 2.40 7.28 -2.39 -0.02 2.38 16 45 H 0.07 1.77 7.85 -2.39 -0.02 1.75 16 Total: -1.00 -72.32 357.36 1.25 -71.08 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.59 Total: 32.28 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 3.88 Total: -17.57 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.97 Total: -80.37 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.11 Total: -48.04 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -72.32 1.25 -71.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887941474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.190 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds