Wall clock time and date at job start Sat Apr 11 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86804 * 119.99840 * 2 1 4 4 H 1.48488 * 109.47201 * 240.00143 * 3 2 1 5 5 H 1.48506 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46817 * 120.00070 * 3 2 1 7 7 C 1.39937 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99654 * 197.09738 * 7 2 1 9 9 C 1.41432 * 120.00203 * 17.09601 * 7 2 1 10 10 C 1.40784 * 120.17416 * 204.61177 * 9 7 2 11 11 C 1.37719 * 120.03737 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41125 * 359.97438 * 11 10 9 13 13 C 1.39872 * 120.35895 * 0.02562 * 12 11 10 14 14 C 1.47890 * 120.02645 * 180.02562 * 13 12 11 15 15 O 1.21545 * 120.00506 * 203.40381 * 14 13 12 16 16 N 1.34778 * 119.99910 * 23.40696 * 14 13 12 17 17 C 1.47226 * 126.70001 * 355.58879 * 16 14 13 18 18 C 1.53794 * 106.35544 * 149.02946 * 17 16 14 19 19 H 1.09007 * 112.27179 * 256.96753 * 18 17 16 20 20 C 1.54177 * 109.13163 * 132.67683 * 18 17 16 21 21 C 1.54845 * 104.30451 * 223.08443 * 20 18 17 22 22 C 1.54854 * 102.73945 * 38.12996 * 21 20 18 23 23 C 1.54188 * 104.29758 * 321.87057 * 22 21 20 24 24 C 1.50699 * 112.24468 * 261.20693 * 23 22 21 25 25 N 1.34775 * 120.00213 * 298.11735 * 24 23 22 26 26 O 1.21282 * 119.99745 * 118.12460 * 24 23 22 27 27 C 1.47217 * 126.70251 * 175.90531 * 16 14 13 28 28 C 1.39036 * 119.95118 * 0.27564 * 13 12 11 29 29 H 0.97001 * 120.00174 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.98585 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.79222 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.82075 * 180.02562 * 12 11 10 33 33 H 1.08994 * 110.08010 * 268.25331 * 17 16 14 34 34 H 1.09001 * 110.07639 * 29.80353 * 17 16 14 35 35 H 1.09007 * 110.46438 * 341.79114 * 20 18 17 36 36 H 1.09003 * 110.46945 * 104.37489 * 20 18 17 37 37 H 1.08997 * 110.76638 * 156.45004 * 21 20 18 38 38 H 1.09006 * 110.75811 * 279.82570 * 21 20 18 39 39 H 1.09001 * 110.47142 * 203.16345 * 22 21 20 40 40 H 1.09006 * 110.46245 * 80.56850 * 22 21 20 41 41 H 0.97001 * 119.99909 * 0.02562 * 25 24 23 42 42 H 0.96996 * 120.00117 * 180.02562 * 25 24 23 43 43 H 1.09003 * 110.08160 * 330.19580 * 27 16 14 44 44 H 1.09001 * 110.07735 * 91.75093 * 27 16 14 45 45 H 1.08004 * 120.20294 * 179.70666 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0522 -1.2327 0.2744 9 6 1.3477 -2.4095 -0.3611 10 6 1.8254 -3.6490 0.1053 11 6 1.1806 -4.8135 -0.2480 12 6 0.0616 -4.7755 -1.0610 13 6 -0.4275 -3.5535 -1.5340 14 6 -1.6245 -3.5214 -2.4020 15 8 -1.8106 -2.5786 -3.1461 16 7 -2.5090 -4.5377 -2.3678 17 6 -2.3862 -5.7855 -1.5962 18 6 -3.8185 -6.2154 -1.2371 19 1 -4.0687 -5.9933 -0.1997 20 6 -3.9908 -7.7143 -1.5544 21 6 -5.3799 -7.8047 -2.2325 22 6 -5.4229 -6.5197 -3.0955 23 6 -4.7343 -5.4515 -2.2225 24 6 -5.7275 -4.5796 -1.4983 25 7 -6.5913 -3.8176 -2.1980 26 8 -5.7495 -4.5636 -0.2858 27 6 -3.7837 -4.6197 -3.0999 28 6 0.2155 -2.3692 -1.1917 29 1 -0.4850 0.8400 0.0004 30 1 2.6985 -3.6868 0.7398 31 1 1.5507 -5.7621 0.1117 32 1 -0.4370 -5.6946 -1.3318 33 1 -1.9055 -6.5540 -2.2014 34 1 -1.8098 -5.6087 -0.6881 35 1 -3.2107 -8.0515 -2.2371 36 1 -3.9755 -8.3024 -0.6368 37 1 -5.4467 -8.6937 -2.8596 38 1 -6.1751 -7.7960 -1.4869 39 1 -6.4542 -6.2348 -3.3039 40 1 -4.8717 -6.6659 -4.0244 41 1 -6.5739 -3.8306 -3.1678 42 1 -7.2303 -3.2561 -1.7319 43 1 -4.1928 -3.6209 -3.2522 44 1 -3.6327 -5.1132 -4.0600 45 1 -0.1559 -1.4237 -1.5585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887952452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:06:07 Heat of formation + Delta-G solvation = -47.076065 kcal Electronic energy + Delta-G solvation = -28469.416302 eV Core-core repulsion = 24644.114638 eV Total energy + Delta-G solvation = -3825.301664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -41.18370 -39.06601 -37.80334 -36.88890 -34.74814 -33.94978 -33.67458 -31.13592 -30.13746 -29.49405 -29.11256 -26.19388 -25.09507 -24.67778 -22.48401 -21.53462 -21.11664 -20.71235 -19.05604 -18.99558 -17.94411 -17.23367 -16.54506 -15.94271 -15.81745 -15.57344 -15.26386 -14.89138 -14.81419 -14.32617 -14.14724 -13.95643 -13.57001 -13.23790 -12.88846 -12.70408 -12.57140 -12.23578 -12.13573 -11.76703 -11.54832 -11.42591 -11.35985 -11.15050 -11.09615 -11.05190 -10.86311 -10.73290 -10.50954 -10.31651 -10.04176 -9.93175 -9.79312 -9.58906 -9.19276 -9.02910 -8.37094 -7.60795 -7.48347 -6.78660 -4.40266 2.24569 2.53412 2.83061 3.08181 3.10015 3.17805 3.30407 3.38640 3.78449 3.92843 4.01001 4.29631 4.49057 4.63277 4.82860 4.94200 5.01517 5.06467 5.22941 5.36471 5.41178 5.49201 5.55737 5.60892 5.64991 5.69746 5.79953 5.81418 5.90533 5.99990 6.05152 6.13338 6.31532 6.33507 6.55574 6.66229 6.75897 6.99842 7.05550 7.18874 7.22524 7.39175 7.69063 7.80375 7.91402 8.03354 8.16120 8.18388 8.51213 8.80380 8.83658 8.87283 10.16230 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.003492 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.526773 B = 8017.282595 C = 8876.714816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.210 4.210 11 C -0.099 4.099 12 C -0.234 4.234 13 C -0.122 4.122 14 C 0.586 3.414 15 O -0.547 6.547 16 N -0.618 5.618 17 C 0.095 3.905 18 C -0.093 4.093 19 H 0.109 0.891 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.099 4.099 24 C 0.540 3.460 25 N -0.855 5.855 26 O -0.532 6.532 27 C 0.121 3.879 28 C -0.095 4.095 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.401 0.599 42 H 0.402 0.598 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -12.600 -6.268 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.098 3.902 10 C -0.230 4.230 11 C -0.117 4.117 12 C -0.253 4.253 13 C -0.125 4.125 14 C 0.380 3.620 15 O -0.425 6.425 16 N -0.352 5.352 17 C -0.028 4.028 18 C -0.112 4.112 19 H 0.127 0.873 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.145 4.145 23 C -0.103 4.103 24 C 0.324 3.676 25 N -0.418 5.418 26 O -0.407 6.407 27 C -0.003 4.003 28 C -0.115 4.115 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.233 0.767 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.173 -11.935 -5.869 18.029 hybrid contribution -0.040 1.060 -0.237 1.087 sum -12.213 -10.874 -6.106 17.456 Atomic orbital electron populations 1.69784 1.07623 1.29778 1.34016 1.25957 0.94760 1.01540 0.92238 0.86312 0.80089 0.80067 0.79973 1.18706 1.20255 1.18956 1.19556 0.97931 0.90991 1.40480 0.90107 1.17565 0.91147 0.92466 0.89026 1.21120 1.03252 0.92848 1.05780 1.20464 0.95906 0.96692 0.98618 1.21000 1.01309 0.95755 1.07268 1.19349 0.95893 0.95579 1.01657 1.18650 0.82283 0.79462 0.81647 1.90689 1.76700 1.33969 1.41131 1.48353 1.20423 1.19082 1.47365 1.22820 0.96146 0.85903 0.97890 1.22690 0.93499 0.94325 1.00694 0.87280 1.22491 0.97188 0.94828 1.00904 1.22513 0.97759 0.97079 0.98710 1.22493 1.00363 0.93709 0.97935 1.22142 0.95124 0.95994 0.97017 1.20068 0.80570 0.79451 0.87542 1.43800 1.39079 1.47847 1.11104 1.90735 1.70297 1.65797 1.13912 1.21977 0.84032 1.00185 0.94063 1.21567 0.96619 0.96151 0.97150 0.90478 0.88639 0.88851 0.87152 0.91208 0.87530 0.90815 0.90923 0.90997 0.91324 0.91139 0.89843 0.77094 0.76722 0.90441 0.90686 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.22 10.94 55.55 0.61 -20.61 16 2 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 3 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.29 9.05 -37.73 -0.34 -12.63 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.10 2.70 5.57 -106.87 -0.60 2.10 16 10 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 11 C -0.10 -2.12 10.01 -39.72 -0.40 -2.51 16 12 C -0.23 -4.99 8.00 -38.92 -0.31 -5.30 16 13 C -0.12 -2.96 5.77 -105.04 -0.61 -3.57 16 14 C 0.59 13.41 7.71 -12.31 -0.09 13.31 16 15 O -0.55 -14.02 16.83 5.33 0.09 -13.93 16 16 N -0.62 -10.96 3.32 -172.64 -0.57 -11.53 16 17 C 0.10 1.38 4.71 -3.23 -0.02 1.37 16 18 C -0.09 -1.16 3.45 -88.70 -0.31 -1.47 16 19 H 0.11 1.62 6.73 -51.92 -0.35 1.27 16 20 C -0.12 -1.05 6.36 -25.14 -0.16 -1.21 16 21 C -0.12 -0.95 6.90 -24.78 -0.17 -1.12 16 22 C -0.11 -0.84 5.97 -25.13 -0.15 -0.99 16 23 C -0.10 -1.14 0.80 -153.73 -0.12 -1.27 16 24 C 0.54 7.21 6.76 -10.99 -0.07 7.14 16 25 N -0.85 -7.95 8.43 31.22 0.26 -7.68 16 26 O -0.53 -9.43 16.29 5.56 0.09 -9.34 16 27 C 0.12 1.67 6.14 -3.24 -0.02 1.65 16 28 C -0.09 -2.58 8.23 -38.44 -0.32 -2.90 16 29 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 30 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.11 1.96 4.34 -52.49 -0.23 1.74 16 33 H 0.07 0.87 6.77 -51.93 -0.35 0.52 16 34 H 0.11 1.75 5.31 -51.93 -0.28 1.47 16 35 H 0.07 0.60 7.17 -51.92 -0.37 0.23 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.45 7.75 -51.93 -0.40 0.05 16 40 H 0.08 0.56 7.17 -51.93 -0.37 0.19 16 41 H 0.40 2.56 8.81 -40.82 -0.36 2.20 16 42 H 0.40 3.35 8.93 -40.82 -0.36 2.99 16 43 H 0.08 1.14 7.43 -51.93 -0.39 0.75 16 44 H 0.08 0.86 7.12 -51.93 -0.37 0.49 16 45 H 0.13 3.85 5.92 -52.48 -0.31 3.54 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -33.78 357.26 -9.13 -42.90 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.80 Total: 11.76 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -4.15 Total: -11.01 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.30 Total: -39.83 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.18 Total: -23.27 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.78 -9.13 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887952452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.172 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds